mRNA_H-elongata_contig66474.14244.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66474.14244.1
Unique NamemRNA_H-elongata_contig66474.14244.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66474.14244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66474contigH-elongata_contig66474:1356..3031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue2.1e-10
Seed eggNOG ortholog2880.D7FKQ0
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0241@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1021
Cds size1020
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66474.14244.1prot_H-elongata_contig66474.14244.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66474 1356..3031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.7803073-CDS-H-elongata_contig66474:1355..21501622931053.7803073-CDS-H-elongata_contig66474:1355..2150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66474 1356..2150 +
1691679679.059662-CDS-H-elongata_contig66474:1355..21501691679679.059662-CDS-H-elongata_contig66474:1355..2150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66474 1356..2150 +
1622931053.8062727-CDS-H-elongata_contig66474:2267..23451622931053.8062727-CDS-H-elongata_contig66474:2267..2345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66474 2268..2345 +
1691679679.0722966-CDS-H-elongata_contig66474:2267..23451691679679.0722966-CDS-H-elongata_contig66474:2267..2345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66474 2268..2345 +
1622931053.826191-CDS-H-elongata_contig66474:2770..28061622931053.826191-CDS-H-elongata_contig66474:2770..2806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66474 2771..2806 +
1691679679.089614-CDS-H-elongata_contig66474:2770..28061691679679.089614-CDS-H-elongata_contig66474:2770..2806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66474 2771..2806 +
1622931053.8615758-CDS-H-elongata_contig66474:2920..30311622931053.8615758-CDS-H-elongata_contig66474:2920..3031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66474 2921..3031 +
1691679679.100229-CDS-H-elongata_contig66474:2920..30311691679679.100229-CDS-H-elongata_contig66474:2920..3031Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66474 2921..3031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66474.14244.1

>prot_H-elongata_contig66474.14244.1 ID=prot_H-elongata_contig66474.14244.1|Name=mRNA_H-elongata_contig66474.14244.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=340bp
VGLGGQHGSVAGVCDSLETDTTPPTRPIRLGGAEEREDSNNSNSCIGDND
VYDDEFDGDYDDFDHGNEGGDLKKENGDGDEEGAMWQSSGRGTQVQHRGL
HRDKQGSRLRSYQVAGSEGGREEGKHERRSLAGWGDNSEELADKDELEGN
SHLTDPRDGLSSSVEPEVGGSEALRPSGVLVSVGDSAEVENGEIDNDANS
GDSEVYVGPDVSDAESVEVFTEQEEAWTFQRPVSDQQIQQVVGEGVEDTV
EDDELQRLIDHLMQQIEHLNATNSALGDGMRRLKEELAETKESEKEAWVY
GDETALAGAGNVRRELEQARRHAREAEQRVTKVKAREQDT
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mRNA from alignment at H-elongata_contig66474:1356..3031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66474.14244.1 ID=mRNA_H-elongata_contig66474.14244.1|Name=mRNA_H-elongata_contig66474.14244.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1676bp|location=Sequence derived from alignment at H-elongata_contig66474:1356..3031+ (Himanthalia elongata Himel1 dioecious)
GTGGGCTTGGGAGGGCAACACGGTTCGGTGGCGGGTGTTTGTGATAGTTT
AGAGACTGATACGACTCCCCCGACGAGACCAATCAGGTTGGGGGGGGCAG
AGGAGAGGGAAGATAGCAACAACAGTAATAGTTGTATTGGTGATAATGAT
GTGTATGACGACGAGTTTGATGGCGATTATGATGATTTTGATCATGGGAA
TGAAGGCGGTGACCTGAAGAAAGAGAATGGTGATGGTGATGAGGAAGGCG
CGATGTGGCAAAGCTCGGGACGTGGCACGCAAGTGCAACACCGGGGTCTG
CATCGAGATAAACAAGGCTCGAGACTTCGTAGCTATCAAGTGGCAGGAAG
CGAAGGAGGAAGAGAAGAAGGGAAACACGAAAGGCGTAGTCTTGCGGGAT
GGGGAGACAATTCCGAAGAGCTTGCAGACAAGGATGAATTGGAAGGCAAC
AGTCACCTGACAGACCCTAGGGATGGACTGAGTTCTTCCGTGGAGCCCGA
AGTAGGAGGTTCAGAAGCTCTGCGGCCAAGCGGGGTATTGGTCTCGGTGG
GCGATTCGGCAGAGGTGGAGAACGGCGAGATTGACAACGATGCGAACAGT
GGGGACAGTGAAGTTTACGTCGGCCCTGATGTTTCCGACGCGGAAAGTGT
GGAAGTTTTCACAGAGCAGGAGGAGGCGTGGACGTTCCAGCGACCCGTGA
GCGATCAACAGATTCAGCAAGTGGTCGGAGAGGGTGTCGAGGACACGGTC
GAGGACGACGAATTGCAGCGGTTGATCGATCACCTCATGCAACAGGTGCG
TGGGGACGACGAATCGCAACCTCTAACGCCTATATTGTGAGCCTGTGGCA
GCAATAACATCATCGTCTGTGGTTGCTACTGCCTTCATTTTCCCCGATAT
AACTTTGGCCAGATCGAGCACCTCAATGCCACAAATAGTGCCCTCGGAGA
CGGGATGCGACGACTCAAGGAAGAGCTGGCGGAAACCAAGGTCCGTCGGA
TGTCGCGTGCATACGCGCCGTCTTCGTTTCATTTTTCTTTTCCCAGGACT
ATTTGAGGCGTGTTCAGCACGCTCGCCTTGTGAGGTTCAAATTGGTTTTG
TTGCATTTACAAAGAGCTGTTTTGTGGTCGCGAGAGGGCTCTTCTGGCTT
AACTTGTTTTGCTCTGCTCCAATTTTGGGGGTCTATCCCATGATGCATTC
CTTAACGTATGGGTGCTTTCTATTGCTCCTGGCAATCCAGTTACTCGAGG
CTCCCTCCCTGTTGGGGTTCTCGCTGCTTTTTGTTCAGCAGTCGGCGCAC
ACTCATCTATGCTTGTACCTATTAAGAGTACATCACCGGCGCGCAGGTTA
TCCCTTGCCCCCCTTGCCCCCCGTTGGTACAACCTTCAATCTAATTTAAC
ATCTGCCAATTTCAGGAGTCCGAGAAAGAAGCCTGGGTTTATGGAGACGA
GGCGGCAAGCGCGCTTGAAGCTCGTCTTGCTGCAGCGCAGCGGGATCTGA
AAGATCAGACCCGTCGCGCCGACGAGGCTGAGAGGGAAGCTTTAGAATCT
GAGTTGCTGGCCGAGACTGCGCTAGCAGGTGCCGGGAATGTTCGGCGGGA
ATTAGAGCAGGCTCGAAGGCATGCGAGAGAGGCCGAACAGCGCGTTACGA
AGGTGAAAGCGAGAGAACAAGACACG
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Coding sequence (CDS) from alignment at H-elongata_contig66474:1356..3031+

>mRNA_H-elongata_contig66474.14244.1 ID=mRNA_H-elongata_contig66474.14244.1|Name=mRNA_H-elongata_contig66474.14244.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2040bp|location=Sequence derived from alignment at H-elongata_contig66474:1356..3031+ (Himanthalia elongata Himel1 dioecious)
GTGGGCTTGGGAGGGCAACACGGTTCGGTGGCGGGTGTTTGTGATAGTTT
AGAGACTGATACGACTCCCCCGACGAGACCAATCAGGTTGGGGGGGGCAG
AGGAGAGGGAAGATAGCAACAACAGTAATAGTTGTATTGGTGATAATGAT
GTGTATGACGACGAGTTTGATGGCGATTATGATGATTTTGATCATGGGAA
TGAAGGCGGTGACCTGAAGAAAGAGAATGGTGATGGTGATGAGGAAGGCG
CGATGTGGCAAAGCTCGGGACGTGGCACGCAAGTGCAACACCGGGGTCTG
CATCGAGATAAACAAGGCTCGAGACTTCGTAGCTATCAAGTGGCAGGAAG
CGAAGGAGGAAGAGAAGAAGGGAAACACGAAAGGCGTAGTCTTGCGGGAT
GGGGAGACAATTCCGAAGAGCTTGCAGACAAGGATGAATTGGAAGGCAAC
AGTCACCTGACAGACCCTAGGGATGGACTGAGTTCTTCCGTGGAGCCCGA
AGTAGGAGGTTCAGAAGCTCTGCGGCCAAGCGGGGTATTGGTCTCGGTGG
GCGATTCGGCAGAGGTGGAGAACGGCGAGATTGACAACGATGCGAACAGT
GGGGACAGTGAAGTTTACGTCGGCCCTGATGTTTCCGACGCGGAAAGTGT
GGAAGTTTTCACAGAGCAGGAGGAGGCGTGGACGTTCCAGCGACCCGTGA
GCGATCAACAGATTCAGCAAGTGGTCGGAGAGGGTGTCGAGGACACGGTC
GAGGACGACGAATTGCAGCGGTTGATCGATCACCTCATGCAACAGGTGGG
CTTGGGAGGGCAACACGGTTCGGTGGCGGGTGTTTGTGATAGTTTAGAGA
CTGATACGACTCCCCCGACGAGACCAATCAGGTTGGGGGGGGCAGAGGAG
AGGGAAGATAGCAACAACAGTAATAGTTGTATTGGTGATAATGATGTGTA
TGACGACGAGTTTGATGGCGATTATGATGATTTTGATCATGGGAATGAAG
GCGGTGACCTGAAGAAAGAGAATGGTGATGGTGATGAGGAAGGCGCGATG
TGGCAAAGCTCGGGACGTGGCACGCAAGTGCAACACCGGGGTCTGCATCG
AGATAAACAAGGCTCGAGACTTCGTAGCTATCAAGTGGCAGGAAGCGAAG
GAGGAAGAGAAGAAGGGAAACACGAAAGGCGTAGTCTTGCGGGATGGGGA
GACAATTCCGAAGAGCTTGCAGACAAGGATGAATTGGAAGGCAACAGTCA
CCTGACAGACCCTAGGGATGGACTGAGTTCTTCCGTGGAGCCCGAAGTAG
GAGGTTCAGAAGCTCTGCGGCCAAGCGGGGTATTGGTCTCGGTGGGCGAT
TCGGCAGAGGTGGAGAACGGCGAGATTGACAACGATGCGAACAGTGGGGA
CAGTGAAGTTTACGTCGGCCCTGATGTTTCCGACGCGGAAAGTGTGGAAG
TTTTCACAGAGCAGGAGGAGGCGTGGACGTTCCAGCGACCCGTGAGCGAT
CAACAGATTCAGCAAGTGGTCGGAGAGGGTGTCGAGGACACGGTCGAGGA
CGACGAATTGCAGCGGTTGATCGATCACCTCATGCAACAGATCGAGCACC
TCAATGCCACAAATAGTGCCCTCGGAGACGGGATGCGACGACTCAAGGAA
GAGCTGGCGGAAACCAAGATCGAGCACCTCAATGCCACAAATAGTGCCCT
CGGAGACGGGATGCGACGACTCAAGGAAGAGCTGGCGGAAACCAAGGAGT
CCGAGAAAGAAGCCTGGGTTTATGGAGACGAGGAGTCCGAGAAAGAAGCC
TGGGTTTATGGAGACGAGACTGCGCTAGCAGGTGCCGGGAATGTTCGGCG
GGAATTAGAGCAGGCTCGAAGGCATGCGAGAGAGGCCGAACAGCGCGTTA
CGAAGGTGAAAGCGAGAGAACAAGACACGACTGCGCTAGCAGGTGCCGGG
AATGTTCGGCGGGAATTAGAGCAGGCTCGAAGGCATGCGAGAGAGGCCGA
ACAGCGCGTTACGAAGGTGAAAGCGAGAGAACAAGACACG
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