mRNA_H-elongata_contig66462.14241.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A6H5K1Z3_9PHAE (EamA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z3_9PHAE) HSP 1 Score: 316 bits (809), Expect = 1.040e-102 Identity = 169/256 (66.02%), Postives = 209/256 (81.64%), Query Frame = 3
Query: 228 ASGYNPIGVTPPTGRSPLRSHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEE-DSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVSERK 992
A G NP +P R +RSH+FM K GL +S++WF AQW+Y TSLA+TSVTSSTIIANSS+LFTY+F+V+A+TERFT KT GVALALLGAV L DNE+ D++ DSLWGDA AL+SA+ Y VY+ IL + PSDDEVS++LV+GY+G AN LIFLPL+VGLA APG +L GLT+H+VQLIV + + DNV+S L WARAILLTT TVATVGCS+TIPIAFVSDF +HGKVP+ L+V+GA L++GGF FVS+R+
Sbjct: 93 APGSNPPDHSPEKPR--MRSHIFMLKAGLCVSLVWFFAQWTYNTSLAYTSVTSSTIIANSSALFTYLFSVVARTERFTKTKTVGVALALLGAV--GLGDNEDGDAAHDSLWGDAAALMSAVGYGVYSTILTILCPSDDEVSMSLVLGYMGVANALIFLPLVVGLAYAPGMHILHGLTFHIVQLIVFKAVMDNVISGLLWARAILLTTPTVATVGCSLTIPIAFVSDFAMHGKVPNPLAVLGAFLVVGGFYFVSDRE 344
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A7S2GQ05_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQ05_9STRA) HSP 1 Score: 201 bits (512), Expect = 3.610e-58 Identity = 121/287 (42.16%), Postives = 177/287 (61.67%), Query Frame = 3
Query: 138 CTITCCEECPTTSIVMLRDYVGRRQHVTKYASGYNPIGVTPPTGRSPLRSHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEE--DSSGD--SLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLP-LLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
C C +E +++ DY V + NP G SH+ KI + IWFLA W+Y SL+ TSVTSSTIIA +SSLFTY+ +L+ E FTL K GV L + GA++VAL D EE D+ G S WGD++ L+SA+ Y+VYT+++ Q P+++ V++ L+ GY+G N++ +P LL+ + P ++ GL+ V+ +V +G+ DNVLS+ WA A+L TT TVATVG S+TIP+AF+SD +L GK P LS +GA+ ++ GF+ V+
Sbjct: 81 CGFCCTKEVEVRKLILDSDY-----DVCEGEESENPPEHPLSAGHQGFWSHLSTAKISAMICPIWFLANWTYNQSLSMTSVTSSTIIATTSSLFTYVLAILSGNEVFTLTKLTGVLLCIAGAIMVALNDREEADDAGGSESSFWGDSVCLVSAVLYSVYTVLIRAQVPNEETVAMPLLFGYIGVFNMIGLVPVLLIVSSFVP--QLFSGLSSEVLGFVVLKGLADNVLSDYLWALAVLYTTPTVATVGLSLTIPLAFLSDALLKGKAPTVLSALGAVSVVLGFVSVN 360
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A836CFC6_9STRA (EamA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFC6_9STRA) HSP 1 Score: 183 bits (464), Expect = 1.600e-50 Identity = 115/249 (46.18%), Postives = 153/249 (61.45%), Query Frame = 3
Query: 279 LRSHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEEDSSGD-----------SLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVSERK 992
LRSH F+ LS+ +WF A +Y SL TSVTS+TII+ +SSL+T + +V ER T GV LA+ G LV +AD G +L GDA+A+++A+ Y VY+ +LAV P D EVS+ L+ GYLGA + PLL LA AP GLT +IVA G+FDNVL+++ WARA++LTT TVA VG ++TIP AFV+DF+LH VP L V+GA +++ GF VS RK
Sbjct: 187 LRSHWSTFRAALSICPVWFAANLAYNASLRSTSVTSNTIISCTSSLWTLLLSVACARERATWGTALGVLLAVGGGALVGVADTAARHGGXXXXXXXXXDRGTLLGDALAVLAAVLYGVYSTLLAVHFPRDAEVSMPLLFGYLGALSAAAGAPLL-ALAHAP----FAGLTRRAAAIIVANGVFDNVLADMLWARAVVLTTPTVAAVGLALTIPFAFVTDFLLHAMVPAPLEVLGAAMVVSGFAVVSRRK 430
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A8K1FBE9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBE9_PYTOL) HSP 1 Score: 172 bits (437), Expect = 8.940e-47 Identity = 97/233 (41.63%), Postives = 149/233 (63.95%), Query Frame = 3
Query: 291 MFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADN--EEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
M +FKI +S IWF+A ++Y SL TSVTSSTI++++S++FT++ +V A E F K GVAL +LG V D+ E+ + D ++GD +AL +A Y VYT + P ++ VSI L G+LGA N ++ P+++ G L GLT ++ LI +G+FDNVLS+ WARA+LLT+ TVATVG S+T+P A SD++ H VP ++++ + L++ GF+ ++
Sbjct: 159 MAIFKISAIISPIWFVANFTYNQSLNMTSVTSSTIVSSTSTVFTFLLSVFALKEPFVWLKVFGVALCMLGNVTTVFNDSGVEDVGAEDHVFGDIVALFAAFMYGVYTTCIRRLIPDEESVSIALFFGFLGAINFVVLFPIVIAFHYT-GIESLSGLTAEILLLIGIKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPFAIFSDYIFHQAVPSLVTLLASSLVVSGFVLIN 390
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: H3GE17_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE17_PHYRM) HSP 1 Score: 171 bits (432), Expect = 5.260e-46 Identity = 93/233 (39.91%), Postives = 149/233 (63.95%), Query Frame = 3
Query: 285 SHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
S+ +F+I +S +WF+A ++Y SL TSV+SSTI++++S++FT++ +V+A E F K GV L + G + D D D ++GD +AL +A Y VYT + P ++ VSI+L G++G N++ LP ++ + G L GLT +V LI +G+FDNVLS+ WARA+LLT+ TVATVG S+T+P+A V+DF HG +P ++++ + L+I GF+ ++
Sbjct: 148 SYRQIFRISAIISPLWFIANFTYNESLNLTSVSSSTIVSSTSTVFTFLLSVVALKEPFVWLKLAGVILCMAGNISTIFNDGGADDGADHVFGDLVALFAAFMYGVYTTAIRRLIPDEESVSISLFFGFIGVINMVCLLPFVLVFHYS-GIESLSGLTLEIVLLIGVKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMLPTSVTLFASALVISGFVLIN 379
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: D0MU52_PHYIT (Drug/Metabolite Transporter (DMT) Superfamily n=12 Tax=Phytophthora TaxID=4783 RepID=D0MU52_PHYIT) HSP 1 Score: 169 bits (429), Expect = 1.750e-45 Identity = 93/233 (39.91%), Postives = 149/233 (63.95%), Query Frame = 3
Query: 285 SHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
S+ +F+I +S +WFLA ++Y SL TSV+SSTI++++S++FT++ +V+A E F K GV L + G + D D D ++GD +AL +A Y VYT + P ++ VSI+L G++GA N++ LP+++ + G L GL+ ++ LI +G+FDNVLS+ WARA+LLT+ TVATVG S+T+P+A V+DF HG P +++ + L+I GF+ ++
Sbjct: 157 SYSQIFRISAIISPLWFLANFTYNESLNLTSVSSSTIVSSTSTVFTFLLSVVALKEPFVWMKLAGVILCMAGNISTIFNDEGADGGTDHVFGDLVALFAAFMYGVYTTTIRRLIPDEESVSISLFFGFIGAINMVCLLPIVLAFHYS-GIESLSGLSLEILVLIGLKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMRPTNVTLFASALVISGFVLIN 388
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A7R9UA56_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UA56_9STRA) HSP 1 Score: 168 bits (426), Expect = 2.450e-45 Identity = 100/250 (40.00%), Postives = 156/250 (62.40%), Query Frame = 3
Query: 279 LRSHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVP-DTLSVVGALLLIGGFIFVSERKSARSSGDFTQG 1025
+ SH + L + +WFLA ++Y SL TSVT+STI++ +SS+FT++ +L ER GV A G VL L+D + G S GD + L+ A+ Y YTM L V +P D+++S +L++GY+G N ++ LP L+ +AL LE LT+ V+ L++ +G+FDNVLS+ W RA+LLT+ TVATVG S+T+P+AF++D+ + D +V+G+LL++ GF V+ +A+S G +G
Sbjct: 145 IMSHKAHLTLALIIWPLWFLANYTYNLSLDLTSVTNSTILSTTSSVFTFLIGLLCGEERLRGMSVAGVLCAFGGVVLTTLSDATSGTDGQSFRGDVVCLVGALFYGAYTMALKVYSPGDEDMSTSLMLGYMGCVNAVLLLPALLIIALQ-SFEPLEKLTWAVLGLLLLKGLFDNVLSDYLWMRAVLLTSPTVATVGLSLTVPMAFLADYFFNPAASQDVGAVLGSLLVVAGFALVTI--AAQSEGGLEEG 391
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A5D6YBD3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBD3_9STRA) HSP 1 Score: 169 bits (427), Expect = 3.350e-45 Identity = 93/231 (40.26%), Postives = 149/231 (64.50%), Query Frame = 3
Query: 297 MFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADNEE--DSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
+F I ++S +WF A ++Y SL TSVTSSTI++++S++FT++ +V+ E F K GV L + G V D+ D + D ++GD +AL SA Y VYT ++ P+++ VSI+L G++G N + LP ++ L G L GLT+ ++ LI +G+FDNVLS+ WARA+LLT+ TVATVG S+T+P+A ++DFV H P ++++ + L++ GF+F++
Sbjct: 138 IFWISATISPLWFAANFTYNQSLNMTSVTSSTIVSSTSTVFTFLMSVIVLREPFKWLKVLGVVLCMAGNVSTIFNDSTSGGDGAADHVFGDLVALFSAFMYGVYTTMIRRLIPNEESVSISLFFGFIGVINFVCLLPFVL-LFHFSGVESLSGLTFEIIGLIAIKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAILADFVFHQSAPTPVTLLASALVLSGFVFIN 367
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A2D4BFG5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFG5_PYTIN) HSP 1 Score: 168 bits (425), Expect = 3.750e-45 Identity = 92/233 (39.48%), Postives = 148/233 (63.52%), Query Frame = 3
Query: 297 MFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALADN----EEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
+ KI +S +WF+A ++Y SL TSVTSSTI++++S++FT++ +V A E F K GV L +LG + D+ + S+ D ++GD +AL +A Y VYT + P ++ VSI L G+LG N + P ++ A G L GLT+ ++ L+V +G+FDNVLS+ WARA+LLT+ TVATVG S+T+P A +SD++ H +P ++++ +LL++ GF+ ++
Sbjct: 144 IIKISAIISPLWFIANFTYNQSLNMTSVTSSTIVSSTSTVFTFLLSVCALREPFVWMKLIGVVLCMLGNITTIFKDSGAADDASSAQDHVFGDLVALFAAFMYGVYTTAIRRLIPDEESVSIALFFGFLGVINFVALFPFVLTFHYA-GIESLSGLTHEIILLLVLKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPFAILSDYMFHQMIPGVVTLLASLLVVSGFVLIN 375
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Match: A0A662XRX8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRX8_9STRA) HSP 1 Score: 167 bits (424), Expect = 9.770e-45 Identity = 93/235 (39.57%), Postives = 152/235 (64.68%), Query Frame = 3
Query: 285 SHMFMFKIGLSLSVIWFLAQWSYITSLAHTSVTSSTIIANSSSLFTYIFNVLAQTERFTLRKTGGVALALLGAVLVALAD--NEEDSSGDSLWGDAMALISAIAYAVYTMILAVQAPSDDEVSITLVIGYLGAANVLIFLPLLVGLALAPGTRVLEGLTYHVVQLIVARGIFDNVLSELFWARAILLTTATVATVGCSITIPIAFVSDFVLHGKVPDTLSVVGALLLIGGFIFVS 983
S+ +F+I +S +WF+A ++Y SL TSV+SSTI++++S++FT++ +V A E F K GGV L + G + D + +D + D ++GD +AL +A Y VYT + P ++ VSI+L G++G N++ LP ++ + G L GLT ++ LI +G+FDNVLS+ WARA+LLT+ TVATVG S+T+P+A V+DF HG +P ++++ + L+I GF+ ++
Sbjct: 159 SYRQIFRISAIISPLWFVANFTYNESLNLTSVSSSTIVSSTSTVFTFLLSVCALKEPFVWLKLGGVILCMAGNISTIFNDKVSGDDGATDHVFGDLVALFAAFMYGVYTTAIRRLIPDEESVSISLFFGFIGIINMVCLLPFVLFFHYS-GVESLSGLTLEILLLIGVKGLFDNVLSDYLWARAVLLTSPTVATVGLSLTVPLAIVADFWFHGMLPSNVTLLASALVISGFVLIN 392 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66462.14241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66462.14241.1 >prot_H-elongata_contig66462.14241.1 ID=prot_H-elongata_contig66462.14241.1|Name=mRNA_H-elongata_contig66462.14241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp MLRDYVGRRQHVTKYASGYNPIGVTPPTGRSPLRSHMFMFKIGLSLSVIWback to top mRNA from alignment at H-elongata_contig66462:530..3113+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66462.14241.1 ID=mRNA_H-elongata_contig66462.14241.1|Name=mRNA_H-elongata_contig66462.14241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2584bp|location=Sequence derived from alignment at H-elongata_contig66462:530..3113+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66462:530..3113+ >mRNA_H-elongata_contig66462.14241.1 ID=mRNA_H-elongata_contig66462.14241.1|Name=mRNA_H-elongata_contig66462.14241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig66462:530..3113+ (Himanthalia elongata Himel1 dioecious)back to top |