mRNA_H-elongata_contig11846.1424.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11846.1424.1
Unique NamemRNA_H-elongata_contig11846.1424.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11846.1424.1 vs. uniprot
Match: D7FW07_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW07_ECTSI)

HSP 1 Score: 530 bits (1366), Expect = 3.050e-179
Identity = 317/671 (47.24%), Postives = 391/671 (58.27%), Query Frame = 1
Query:    1 LNGDLYDASAVERSLSTAEAFMSGDTPKEWAVPDSLPSTVVYKVLGTGVASALDIAYFHVRYSAVSRFDAGSITADTAAAAVAIVPPPEVYFLCLAFHVPSRADLLAMPGIEN-PALRNMLMRVFDLRIAEELRSVDDPGSESVPPDD-----ELRFPVLKNPFLAVTQSTWLETAVSSAPKTWVAFFSPRFGNPEGTMRGSDPALSLPIRARCDATRDWLARLYAFAVPNRRAVETCQRAIEACGGRG--------SGIVEVGAGLGYWKWVLENAVNGGGGPSPTPSGVTGGDNVRVRPKIVTGVVIDKDGMS----------PLRVLAIDKDPTRLPSHVM---------------------------RRDSTANTAGKS----RSGEGQGRRXXXXAGXXXXXXXXXXXXXXXXRRNEYHGEAPAWASVEEGGPELLQSLSADHFPALLLCYPPPSISSERKGGSTTACMGADALGHFSGKLVLYIGEVGGDTGSPRLEEALQADWDMIKDVELPCFSSTANRLMVFTRKGGVLPQTP-SVITAEDVQKDGERHRACSE----SNDAVDTTKGSWSKP---LSMYCCAHCGR--AGNKKVPLRRCRLTRAASYCSERCFLADGESWRANLQARHAHV---------NEAAFGIGGIFRNRKLFKRLA 1791
            L G L+D  AV R LS AEA +SGDT   W +PDSL S+ +YK LGTG+AS LD+AY+H RY+A SRFDAG + ADT +++  +VPPPEVYF+ LAFHVP+  ++ A   ++N PALR +L+ VFDL + +         + S+PP       E+RFPVL+NP LAV QS WLETAV ++ K+WV  F PRFG+ EGTMRGSDP L  PIR RCDATRDW ARL+AFAVPNRRA++ C+RA++ACG  G         GIVEVGAGLGYWKWVLE     G GP P   G                + + K G +          PL+ LAIDKDP+R+P                               RR     T  +     R GEGQ  R                        NEYHG APAWA VE+GGPE L++LSA  +P LLLCYPPPS+     G   + CMGADAL  FSGK++LYIGEVGGDTGSPR E AL+A WD++++VELPCFSSTANRLMVF RKG        S  TA   +K  +   A +       DA  T           ++MY C+ CG   A    V L RCRLTR+ S+CSE+C   D E WRANL+ARH H+         N++    GG+FR++KLFKRLA
Sbjct:    4 LGGALHDPPAVARCLSAAEALLSGDTGGRWVMPDSLRSSSIYKALGTGIASELDLAYWHARYTAASRFDAGGVAADTESSSHQVVPPPEVYFVGLAFHVPAVTEVRASAVLDNNPALRRVLVDVFDLPVGDA--GAQRHATRSLPPSSSSGGGEIRFPVLENPLLAVAQSAWLETAVCASAKSWVPHFPPRFGDNEGTMRGSDPGLPPPIRLRCDATRDWSARLFAFAVPNRRALDACKRALDACGVGGXXXXXXXSGGIVEVGAGLGYWKWVLE-----GLGPFPNGRGXXXXXXXXXXTSRGVSLHLGKAGRTLSGGDAKEAPPLKFLAIDKDPSRVPGGTGVSAASXXXXXXXXXXXXXXXXXXXXXGRRGGNKRTRREGSRGGRHGEGQSERPT---------------------HNEYHGGAPAWAVVEQGGPEQLRALSAAAYPVLLLCYPPPSVG---VGTGASGCMGADALARFSGKVLLYIGEVGGDTGSPRFEAALRAGWDLVEEVELPCFSSTANRLMVFARKGAFSSGGGVSASTAGSGKKRKDAGAAAARLDTPGKDACPTGDAGGXXXXXGMAMYRCSGCGAKAAAEGGVLLHRCRLTRSVSFCSEKCLTLDAERWRANLEARHVHLAPGTAVELANQSG-KFGGVFRDKKLFKRLA 642          
BLAST of mRNA_H-elongata_contig11846.1424.1 vs. uniprot
Match: A0A0L0G853_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G853_9EUKA)

HSP 1 Score: 184 bits (467), Expect = 2.320e-46
Identity = 158/499 (31.66%), Postives = 214/499 (42.89%), Query Frame = 1
Query:   10 DLYDASAVERSLSTAEAFMSGDTPKEWAVPDSLPSTV---------VYKVLGTGVASALDIAYFHVRYSAVSRFDAGSITADTAAAAVAIVPPPEVYFLCLAFHVPSRADLLAMPGIENPALRNMLMRVFDLRIAEELRSVDDPGSESVPPDDELRFPVLKNPFLAVTQSTWLETAVSSAPKTWVAFF----SPRFGNPEGTMRGSDPALSLPIRARCDATRDWLARLYAFAVPNRRAVETCQRAIEACGGRGSGIVEVGAGLGYWKWVLENAVNGGGGPSPTPSGVTGGDNVRVRPKIVTGVVIDKDGMSPLRVLAIDKDPTRLPSHVMRRDSTANTAGKSRSGEGQGRRXXXXAGXXXXXXXXXXXXXXXXRRNEYHGEAPAWASVEEGGPELL----QSLSADHFP-----ALLLCYPPPSISSERKGGSTTACMG-ADALGHFSGKLVLYIGEVGGDTGSPRLEEALQADWDMIKDVELPCFSSTANRLMVFTRK 1437
            DL+ A  V R L  A+  +      + AVP  LPS V           +  G  VA+ LD  Y+H+ YSA + F          +   A++PPPEVYF CL  H P   +++    I  P++R  L    D++             ++V    E  +    NP LA  Q TW+E  + +  ++WV  F    SP   N E TMRG DP L  PI  RCD+ RDW ARL AFAVPN RA +   +           IVEVGAG+GYWK   +           T    T  D  R                     LA DKDP   PS  +   + +     ++S                               NEYHG + AWA+V+ GGPE +    Q+ + D        A+L CYPPP       G     C+  AD LG       +Y+GE+ GDTG+ + ++ L   W + + V LPCFS+TA  L VF R+
Sbjct:  228 DLHSAQTVIRHLQRAKNIVQNP---DQAVP--LPSKVKGGFGSVDFTAQARGVYVAAELDNVYWHILYSAQTNFH----LLQGRSRLPAVIPPPEVYFTCLT-HTPPTKEMMETISI-TPSIRKTLFDTMDMKF------------DAV--TGEPAYCNTSNPLLAALQGTWIEMEICAQSRSWVGNFPLQDSP---NAEKTMRGPDPLLPQPISLRCDSVRDWSARLMAFAVPNTRAYDVLSKF--------GTIVEVGAGVGYWKHYFD-----------TSMASTQNDGTRTE------------------YLAFDKDP---PSSAVDSQTRSKVPAAAKS-----------------------------TMNEYHGHSGAWATVQVGGPESISLSSQTKAVDTGAQSKNIAVLSCYPPPY------GNLALNCLKLADKLGAS----FVYVGEINGDTGTLQFQQTLAKSWTLSQTVALPCFSNTAFSLRVFVRR 619          
BLAST of mRNA_H-elongata_contig11846.1424.1 vs. uniprot
Match: A0A836CJJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 4.700e-42
Identity = 207/660 (31.36%), Postives = 248/660 (37.58%), Query Frame = 1
Query:   91 AVPDSLPSTVVYKVLGTGVASALDIAYFHVRYSAVSRFDAGS-------------ITADTAAAAVAIVPPPEVYFLCLAFHVPS----RADLLAMPGIENPALRNMLMRVFDLRIAEELRSVDDPGSESVPPDDELRFPVLKNPFLAVTQSTWLETAVSSAPKTWVAFFSPRFGNPEGTMRGSDPALSLPIRARCDATRDWLARLYAFAVPNRRAVETCQRAIEAC---------------GGRGSGIVEVGAGLGYWKWVLENAVNGGGGPSPTPSGVTGGDNVRVRPKIVTGVVIDKDGMSPLRVLAIDKDPTRLPSHVMRRDSTANTAGKSRSGEGQGRRXXXXAGXXXXXXXXXXXXXXXXRRNEYHGEAPAWASVEEGGPE----LLQSLSADHFPALLLCYPPP-------------SISSERKGGS----------------------------------------TTACMGADALGHFSGKLVLYIGEVGGDTGSPRLEEALQADW-DMIKDVELPCFSSTANRLMVFTRKGGVLPQTPSVITAEDVQKDGERHRACSESNDAVDTTKGSWSKPLSMYCCAHCGRAGNKKVPLRRCRLTRAASYCSERCFLADGESWRANLQARH--AHVNEAAFGIGGI-FRNRKLFKRLA 1791
            A+P+   +TV+ +  G  +A+ LD  Y+H+RY+AV+  DA +               A TA+    IVPPPEVYF CL+ H+ S    R  L A  G     L   L    DL +          G +                     ++TWLE  V++    W           EGTMRGSDP L   +R RCD+ RDW ARL AFAVPN  A+    R   A                GGR + +VEVGAGLGYWKW                        +R  P+              +   A DKDP  LP                         XXXX  XXXXXXXXXXXXXXXX   EYHG APAW++VE GG E                L LCYPPP             +      GG                                               ADAL  F+G  V+Y GE GGDTG+P LE AL A W      VELP F +TA  LMVF R                         A   +                   CA C   G     LRRCR TRAA YCSE C   D    +     RH  A    A  G GG  F ++K F  L+
Sbjct:  160 ALPEGAAATVMPQA-GLALAAELDAVYWHLRYAAVTAPDASAGSSXXXXXXXXXXXXATTASCNAHIVPPPEVYFTCLSGHMCSVAQARRALQASCGAACAPLLEHLKATMDLDLQG--------GGKG--------------------KATWLEMEVAAGYGQWSGGLPLTPSPYEGTMRGSDPLLPDIVRTRCDSIRDWAARLMAFAVPNAAALRVIARVCGAVSGGGDGSAPTGSSSGGGRSAALVEVGAGLGYWKWAA----------------------LRAYPR--------------MSYTAYDKDPPPLPG-----------------ARAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYHGRAPAWSAVERGGTERAXXXXXXXXXXXXXXLFLCYPPPEGTMGIAPHGGCCAYRDRGAGGKRFLSTVXXXXXXXXXXXXXXXXXXXAIVKSPTPPRSHPVRAPTTQTADALRAFAGDTVIYAGERGGDTGTPALEAALSAAWAPAAPPVELPAFPNTAACLMVFRRXXXXXXXXXXXXXXXXXAGVVRAFAAAPAAXXXXXXXX-----XXXXXSCAVCKATGQG---LRRCRRTRAACYCSEACRKTDETRLQVLQLVRHVRAPAGVAVGGSGGAPFNDKKRFAPLS 729          
BLAST of mRNA_H-elongata_contig11846.1424.1 vs. uniprot
Match: C5L776_PERM5 (Uncharacterized protein n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L776_PERM5)

HSP 1 Score: 85.9 bits (211), Expect = 7.370e-14
Identity = 63/214 (29.44%), Postives = 92/214 (42.99%), Query Frame = 1
Query: 1096 NEYHGEAPAWASVEEGGPELLQSLSADHFPALLLCYPPPSISSERKGGSTTACMGADALGHFSGKLVLYIGEVGGDTGSPRLEEALQADWDMIKDVELPCFSSTANRLMVFTRKGGVLPQTPSVITAEDVQKDGERHRACSESNDAVDTTKGSWSKPLSMYCCAHCGRAGNKKVPLRRCRLTRAASYCS-ERCFLADGESWRANLQARHAHVNE 1734
            N YHG       V++G    LQSLSA+ +P L+LCYPPP              M A+A+G+F G  V +IGE  GDTG+  +++AL   + MI+   LP + ST+  + ++ R+                                 D  KG     L    C+HCGR         RCR+T   +YC+ E C  A     R  +  +   V++
Sbjct:  436 NAYHGRCRPHTEVKKGNAADLQSLSAEEYPKLMLCYPPPQEH-----------MAAEAIGNFKGDYVYHIGEWFGDTGTLAMQKALGQGFRMIRREPLPNWPSTSYEMTIWKRRSN------------------------------KDDDKG--ENALPAVACSHCGRKAQV-----RCRVTCEIAYCNKEECLDAHRSRHRTLMAFKMVPVHK 601          
BLAST of mRNA_H-elongata_contig11846.1424.1 vs. uniprot
Match: A0A7S4PVP8_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PVP8_9DINO)

HSP 1 Score: 74.3 bits (181), Expect = 2.690e-10
Identity = 70/221 (31.67%), Postives = 88/221 (39.82%), Query Frame = 1
Query:  154 ALDIAYFHVRYSAVSRFDAGSITADTAAAAVAIVPPPEVYFLCLAFHVPSRADLLAMPGIEN-------PALRNMLMRVFDLRIAEELRSVDDPGSESVPPDDELRFPVLKNPFLAVTQSTWLETAVSSA-----PKTWVAFFSPRFGNPEGTMRGSDPALSLPIRARCDATRDWLARLYAFAVPNRRAVETCQRAIEACGGRGSGIVEVGAGLGYWKWVL 780
            ALD AY  + Y A        +  D   A    VPPP  YF   A          +   +         PA R +  R+ DL  A         G      DD        NP L + Q+ W E  V  A     P +  A       NP  TM+G DP  +  ++   DATR W   LYA+AVPN  AVE  +R         S +VE+GAG GYW W+L
Sbjct:   77 ALDAAYHRLHYLATL------LGGDAEKA----VPPPHRYFADGAAGAWGPGGAASSDAVRRFLDQEAGPAGREVARRLLDLPEA---------GGRGAAGDD--------NPLLVLLQARWREAVVQLAGAGLVPASPEACCEGPEPNPS-TMKGRDPLAAPAVQRWRDATRVWACHLYAYAVPNEAAVEVLRRY--------SPLVEIGAGTGYWAWLL 261          
BLAST of mRNA_H-elongata_contig11846.1424.1 vs. uniprot
Match: A0A7S4PW50_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PW50_9DINO)

HSP 1 Score: 74.3 bits (181), Expect = 2.720e-10
Identity = 70/221 (31.67%), Postives = 88/221 (39.82%), Query Frame = 1
Query:  154 ALDIAYFHVRYSAVSRFDAGSITADTAAAAVAIVPPPEVYFLCLAFHVPSRADLLAMPGIEN-------PALRNMLMRVFDLRIAEELRSVDDPGSESVPPDDELRFPVLKNPFLAVTQSTWLETAVSSA-----PKTWVAFFSPRFGNPEGTMRGSDPALSLPIRARCDATRDWLARLYAFAVPNRRAVETCQRAIEACGGRGSGIVEVGAGLGYWKWVL 780
            ALD AY  + Y A        +  D   A    VPPP  YF   A          +   +         PA R +  R+ DL  A         G      DD        NP L + Q+ W E  V  A     P +  A       NP  TM+G DP  +  ++   DATR W   LYA+AVPN  AVE  +R         S +VE+GAG GYW W+L
Sbjct:   77 ALDAAYHRLHYLATL------LGGDAEKA----VPPPHRYFADGAAGAWGPGGAASSDAVRRFLDQEAGPAGREVARRLLDLPEA---------GGRGAAGDD--------NPLLVLLQARWREAVVQLAGAGLVPASPEACCEGPEPNPS-TMKGRDPLAAPAVQRWRDATRVWACHLYAYAVPNEAAVEVLRRY--------SPLVEIGAGTGYWAWLL 261          
BLAST of mRNA_H-elongata_contig11846.1424.1 vs. uniprot
Match: A0A8J1W0E8_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1W0E8_9DINO)

HSP 1 Score: 74.3 bits (181), Expect = 4.260e-10
Identity = 118/436 (27.06%), Postives = 170/436 (38.99%), Query Frame = 1
Query:  592 PALSLPIRARCDATRDWLARLYAFAVPNRRAVETCQRAIEA---------CGGRG--SGIVEVGAGLGYWKWVL-------ENAVN---GGGGPSPTPSGVTGGDNVRVRPKIVTGVVIDK-DGMSPLR---VLAIDKDPTR--------LPSHVMRRDSTANTAGKSRSGEGQGRRXXXXAGXXXXXXXXXXXXXXXXRRNEYHGEAPAWASVEEGGPELLQSLSADHFPALLLCYPPPSISSERKGGSTTACMGADALGHFSGKLVLYIGE-VGGDTGSPRLEEALQADWDMIKDVELPC-FSSTANRLMVFTRKGGVLPQTPSV---ITAEDVQKDGERHRACSESN--------DAVDTTKGSWSKPLSMYCCAHCGRAGNKKVPLRRC----RLTRAASYCSERCFLADGESWRANLQARHAHVNEAAFGI 1749
            PAL   +    + TRDW ARLYAFAVP    + + +  + A           GR   +  +EVGAGLGYW   L       E+A N     GG SP+ S         V P     V  D+ D  +  R     A D +P +        L   + RR     ++GK       GR     AG                R+ +    AP  A V+E    +  SL+ +H   L LC+PPPS             M A+ L  F+G+ V+Y+GE   G T   +    L  ++ + K V LP  +++T + + +F RK   +     V   I   +   +  R    + S          A    + S+ +P S++ C  CG    ++ PL RC    R   A SY S  C        R  + AR A  + A F  
Sbjct:  471 PAL---VELHANVTRDWAARLYAFAVPTENVLTSLRETVLAKEKENQHDNLEGRTVPTTFIEVGAGLGYWAEFLRRGLLDMESAKNKSPSSGGSSPSHSHKISVRAFDVMPYRGWRVFDDQEDKTNSARGSSASARDVEPCKEDFSEAGPLRELLDRRSCGRASSGKIEHSAITGR---SAAGVDEGTNKAKAMKRLKKRKMDDKAVAPG-AGVDESA--VASSLN-EHRTCLFLCFPPPSEP-----------MAANCLQKFNGRWVVYVGEWATGMTADWKFHATLLKEFSLRKIVPLPAQWATTCHSMFIFERKTEEIESGRGVHLNIAEPESSLEATRTAPATTSTTNPFVTCLSAKHLDETSFERPESLWHCGACGAKTGRRKPLVRCIGGNRGLVACSYGSSSC--------RDAVLARDAVFSSAYFAF 877          
BLAST of mRNA_H-elongata_contig11846.1424.1 vs. uniprot
Match: A0A1V9YFI2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YFI2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.990e-7
Identity = 51/189 (26.98%), Postives = 80/189 (42.33%), Query Frame = 1
Query: 1117 PAWASVEEGGPELLQSLSADHFPALLLCYPPPSISSERKGGSTTACMGADALGHFSGKLVLYIGEVGGDTGSPRLEEALQADWDMIKDVELPCFSSTANRLMVFTRKGGVLPQTPSVITAEDVQKDGERHRACSESNDAVDTTKGSWSKPLSMYCCAHCGRAGNKKVPLRRCRLTRAASYCSERCFLAD 1683
            P +  V EGGPE+L+ LSA     L LC PP +             +  DAL H+ G+ ++Y+GE  G+TG  + E  +   + +++ V LP ++ TA+ L ++ RK                                        S  L +  CA C R+ +  + LRRC L +  +YC+  C   D
Sbjct:  458 PPFTKVYEGGPEVLE-LSALKGRTLFLCAPPQTS------------LARDALRHYKGRYLVYVGEWYGETGDRQFECDVMKSFKLVQRVALPNWTDTAHELTIWDRKAT--------------------------------------SSELDVIECASC-RSSHVAL-LRRCTLCKTCAYCTAECMRQD 593          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11846.1424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FW07_ECTSI3.050e-17947.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0L0G853_9EUKA2.320e-4631.66Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A836CJJ1_9STRA4.700e-4231.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C5L776_PERM57.370e-1429.44Uncharacterized protein n=2 Tax=Perkinsus marinus ... [more]
A0A7S4PVP8_9DINO2.690e-1031.67Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S4PW50_9DINO2.720e-1031.67Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A8J1W0E8_9DINO4.260e-1027.06Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A1V9YFI2_9STRA1.990e-726.98Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11846contigH-elongata_contig11846:3814..6318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score532.3
Seed ortholog evalue2.8e-148
Seed eggNOG ortholog2880.D7FW07
EggNOG OGs29H2K@1,2RQ99@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002890.1
Exons3
Model size1797
Cds size1797
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11846.1424.1prot_H-elongata_contig11846.1424.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11846 3814..6318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.1456804-CDS-H-elongata_contig11846:3813..52041622929692.1456804-CDS-H-elongata_contig11846:3813..5204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11846 3814..5204 -
1691679120.8713305-CDS-H-elongata_contig11846:3813..52041691679120.8713305-CDS-H-elongata_contig11846:3813..5204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11846 3814..5204 -
1622929692.1598766-CDS-H-elongata_contig11846:5636..59131622929692.1598766-CDS-H-elongata_contig11846:5636..5913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11846 5637..5913 -
1691679120.8823748-CDS-H-elongata_contig11846:5636..59131691679120.8823748-CDS-H-elongata_contig11846:5636..5913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11846 5637..5913 -
1622929692.172941-CDS-H-elongata_contig11846:6189..63181622929692.172941-CDS-H-elongata_contig11846:6189..6318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11846 6190..6318 -
1691679120.899301-CDS-H-elongata_contig11846:6189..63181691679120.899301-CDS-H-elongata_contig11846:6189..6318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11846 6190..6318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11846.1424.1

>prot_H-elongata_contig11846.1424.1 ID=prot_H-elongata_contig11846.1424.1|Name=mRNA_H-elongata_contig11846.1424.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=599bp
LNGDLYDASAVERSLSTAEAFMSGDTPKEWAVPDSLPSTVVYKVLGTGVA
SALDIAYFHVRYSAVSRFDAGSITADTAAAAVAIVPPPEVYFLCLAFHVP
SRADLLAMPGIENPALRNMLMRVFDLRIAEELRSVDDPGSESVPPDDELR
FPVLKNPFLAVTQSTWLETAVSSAPKTWVAFFSPRFGNPEGTMRGSDPAL
SLPIRARCDATRDWLARLYAFAVPNRRAVETCQRAIEACGGRGSGIVEVG
AGLGYWKWVLENAVNGGGGPSPTPSGVTGGDNVRVRPKIVTGVVIDKDGM
SPLRVLAIDKDPTRLPSHVMRRDSTANTAGKSRSGEGQGRRGRGRAGGRG
GRGGANRRAERKERRNEYHGEAPAWASVEEGGPELLQSLSADHFPALLLC
YPPPSISSERKGGSTTACMGADALGHFSGKLVLYIGEVGGDTGSPRLEEA
LQADWDMIKDVELPCFSSTANRLMVFTRKGGVLPQTPSVITAEDVQKDGE
RHRACSESNDAVDTTKGSWSKPLSMYCCAHCGRAGNKKVPLRRCRLTRAA
SYCSERCFLADGESWRANLQARHAHVNEAAFGIGGIFRNRKLFKRLAV*
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mRNA from alignment at H-elongata_contig11846:3814..6318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11846.1424.1 ID=mRNA_H-elongata_contig11846.1424.1|Name=mRNA_H-elongata_contig11846.1424.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2505bp|location=Sequence derived from alignment at H-elongata_contig11846:3814..6318- (Himanthalia elongata Himel1 dioecious)
TTGAATGGGGATCTGTACGACGCTTCTGCGGTTGAGCGTTCTCTCTCGAC TGCAGAGGCGTTCATGTCGGGCGATACTCCAAAGGAATGGGCTGTGCCGG ATTCTTTACCCTCGACAGTTGTATACAAGGTAAAAATACGTATTACACAC ATTTCCCCCCTCAAACAGTAAACACTGGCCGGATTTCAGAAAATTGGAAC GCTCTGCTGTGAACGTCTACGACCAGCAGCTACCACCGTTACCGTGGTTC CCTGTAGTGAGGATGTTTCCTGTTTTATCAGGCGTGGGCACGCCGGGTGT TCTGCGGGTATCGTCCTTCCCTCAATGTCACCGACGAAAGCAATCAAGAT CCCTGTCGAACAGCAGTTTGATGATTTCATCTCGCCTGCTCGGTGCATGT CACAGGTACTAGGAACGGGCGTCGCATCCGCACTGGATATCGCGTACTTT CATGTACGATACTCGGCAGTCTCGAGATTTGACGCTGGCAGTATTACTGC CGACACGGCGGCGGCAGCGGTTGCCATCGTGCCTCCTCCCGAGGTGTACT TTTTATGCCTGGCCTTCCACGTACCCTCCCGAGCGGACTTGCTAGCAATG CCAGGGATCGAAAACCCGGCACTCCGGAATATGCTGATGCGGGTCTTCGA CCTGCGCATTGCCGAAGAACTTCGATCCGTAGGTAACCAAGCATGTATAA ATGTGTCTTTGAGTGAGACAGATGGTGGGAGAAGTGGACTGTGTTATTTA TATGCTGCATTTGTTGCGACACTTTCCGCACCAACGATATTACGACAAAC GATTTAACGGTCTGATGTACAAGAAGGCAAGACTAAAAGTGAAACCTGCG TTGTCATCACCATTTGACTCGGGGAAATTTGTTCCTTTACCGTCCTGAGG AATGCGCTGCTAGAACGATGCCCATGACTTGATGTTGTCGTGGCTTGCTG GCTACGGTATGTTTACTGTATACTCGTTTACGTTCAGTGCGAGAGGCGAT TAGAGCGTGGAAACCCATTTGTTTAAAGGTCTCTTGACCCCCGAATCCTC ACTCCTTACTCTTCCCTCGGTTTTCGCATGGGGTCGCTCCTGGACTTTTC AAACATTTTCCCAGACGATCCGGGATCTGAGAGCGTACCTCCGGACGACG AGCTTCGCTTTCCTGTCCTGAAAAACCCTTTTTTGGCTGTGACCCAGTCT ACCTGGCTAGAAACTGCCGTGTCTTCGGCGCCCAAAACATGGGTGGCCTT CTTCTCTCCCCGATTCGGCAACCCGGAAGGAACGATGCGAGGCTCCGATC CCGCGCTGTCCCTTCCTATTCGCGCGCGGTGCGACGCTACGAGAGACTGG CTTGCGAGACTGTATGCCTTCGCGGTACCGAACCGACGGGCAGTGGAGAC ATGCCAACGGGCTATTGAGGCGTGTGGGGGACGGGGGTCCGGGATCGTGG AAGTTGGTGCAGGTCTTGGGTACTGGAAATGGGTTTTGGAGAACGCGGTA AATGGGGGAGGTGGTCCGTCACCGACACCCAGTGGCGTAACGGGGGGGGA TAATGTCCGAGTCCGTCCAAAAATAGTCACCGGCGTTGTGATAGACAAGG ATGGGATGAGCCCATTGCGAGTCCTTGCGATCGACAAAGACCCCACAAGA CTCCCGAGCCACGTAATGCGACGAGATTCGACCGCAAATACCGCCGGTAA AAGCCGTAGCGGCGAAGGGCAGGGTCGACGTGGCCGTGGGCGAGCTGGTG GGCGTGGAGGGCGAGGCGGAGCAAACCGGCGAGCCGAACGAAAAGAACGC CGAAATGAGTACCATGGCGAAGCGCCCGCTTGGGCGTCTGTTGAAGAGGG GGGACCGGAACTGTTACAGTCCCTGAGTGCTGACCACTTTCCAGCCTTGC TTCTGTGTTACCCCCCCCCATCGATTAGCAGTGAGAGGAAGGGCGGCAGT ACAACGGCATGCATGGGCGCAGACGCTTTAGGACACTTTTCGGGAAAGTT GGTGCTGTACATCGGTGAGGTCGGGGGCGACACGGGCAGCCCCCGCTTGG AGGAGGCTCTGCAGGCGGATTGGGACATGATTAAGGACGTCGAACTGCCG TGCTTTTCTTCAACCGCGAATCGCCTCATGGTTTTCACCCGGAAAGGGGG CGTTTTGCCCCAAACACCGTCTGTGATCACAGCAGAAGACGTTCAAAAGG ATGGAGAGCGCCATCGTGCGTGTTCGGAATCGAACGATGCCGTTGATACG ACTAAGGGCAGCTGGTCAAAGCCCCTCTCTATGTACTGCTGCGCACACTG TGGCAGGGCCGGGAATAAAAAAGTGCCGCTTCGCCGCTGCCGCCTCACGC GCGCCGCGAGTTACTGTTCCGAACGGTGTTTCCTCGCCGACGGGGAGAGC TGGCGGGCGAATCTTCAAGCGCGACACGCCCATGTGAACGAGGCGGCTTT CGGGATTGGTGGTATTTTCCGTAACAGAAAGCTCTTTAAGCGTCTCGCGG TGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig11846:3814..6318-

>mRNA_H-elongata_contig11846.1424.1 ID=mRNA_H-elongata_contig11846.1424.1|Name=mRNA_H-elongata_contig11846.1424.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3594bp|location=Sequence derived from alignment at H-elongata_contig11846:3814..6318- (Himanthalia elongata Himel1 dioecious)
TTGAATGGGGATCTGTACGACGCTTCTGCGGTTGAGCGTTCTCTCTCGAC
TGCAGAGGCGTTCATGTCGGGCGATACTCCAAAGGAATGGGCTGTGCCGG
ATTCTTTACCCTCGACAGTTGTATACAAGTTGAATGGGGATCTGTACGAC
GCTTCTGCGGTTGAGCGTTCTCTCTCGACTGCAGAGGCGTTCATGTCGGG
CGATACTCCAAAGGAATGGGCTGTGCCGGATTCTTTACCCTCGACAGTTG
TATACAAGGTACTAGGAACGGGCGTCGCATCCGCACTGGATATCGCGTAC
TTTCATGTACGATACTCGGCAGTCTCGAGATTTGACGCTGGCAGTATTAC
TGCCGACACGGCGGCGGCAGCGGTTGCCATCGTGCCTCCTCCCGAGGTGT
ACTTTTTATGCCTGGCCTTCCACGTACCCTCCCGAGCGGACTTGCTAGCA
ATGCCAGGGATCGAAAACCCGGCACTCCGGAATATGCTGATGCGGGTCTT
CGACCTGCGCATTGCCGAAGAACTTCGATCCGTAGGTACTAGGAACGGGC
GTCGCATCCGCACTGGATATCGCGTACTTTCATGTACGATACTCGGCAGT
CTCGAGATTTGACGCTGGCAGTATTACTGCCGACACGGCGGCGGCAGCGG
TTGCCATCGTGCCTCCTCCCGAGGTGTACTTTTTATGCCTGGCCTTCCAC
GTACCCTCCCGAGCGGACTTGCTAGCAATGCCAGGGATCGAAAACCCGGC
ACTCCGGAATATGCTGATGCGGGTCTTCGACCTGCGCATTGCCGAAGAAC
TTCGATCCGTAGACGATCCGGGATCTGAGAGCGTACCTCCGGACGACGAG
CTTCGCTTTCCTGTCCTGAAAAACCCTTTTTTGGCTGTGACCCAGTCTAC
CTGGCTAGAAACTGCCGTGTCTTCGGCGCCCAAAACATGGGTGGCCTTCT
TCTCTCCCCGATTCGGCAACCCGGAAGGAACGATGCGAGGCTCCGATCCC
GCGCTGTCCCTTCCTATTCGCGCGCGGTGCGACGCTACGAGAGACTGGCT
TGCGAGACTGTATGCCTTCGCGGTACCGAACCGACGGGCAGTGGAGACAT
GCCAACGGGCTATTGAGGCGTGTGGGGGACGGGGGTCCGGGATCGTGGAA
GTTGGTGCAGGTCTTGGGTACTGGAAATGGGTTTTGGAGAACGCGGTAAA
TGGGGGAGGTGGTCCGTCACCGACACCCAGTGGCGTAACGGGGGGGGATA
ATGTCCGAGTCCGTCCAAAAATAGTCACCGGCGTTGTGATAGACAAGGAT
GGGATGAGCCCATTGCGAGTCCTTGCGATCGACAAAGACCCCACAAGACT
CCCGAGCCACGTAATGCGACGAGATTCGACCGCAAATACCGCCGGTAAAA
GCCGTAGCGGCGAAGGGCAGGGTCGACGTGGCCGTGGGCGAGCTGGTGGG
CGTGGAGGGCGAGGCGGAGCAAACCGGCGAGCCGAACGAAAAGAACGCCG
AAATGAGTACCATGGCGAAGCGCCCGCTTGGGCGTCTGTTGAAGAGGGGG
GACCGGAACTGTTACAGTCCCTGAGTGCTGACCACTTTCCAGCCTTGCTT
CTGTGTTACCCCCCCCCATCGATTAGCAGTGAGAGGAAGGGCGGCAGTAC
AACGGCATGCATGGGCGCAGACGCTTTAGGACACTTTTCGGGAAAGTTGG
TGCTGTACATCGGTGAGGTCGGGGGCGACACGGGCAGCCCCCGCTTGGAG
GAGGCTCTGCAGGCGGATTGGGACATGATTAAGGACGTCGAACTGCCGTG
CTTTTCTTCAACCGCGAATCGCCTCATGGTTTTCACCCGGAAAGGGGGCG
TTTTGCCCCAAACACCGTCTGTGATCACAGCAGAAGACGTTCAAAAGGAT
GGAGAGCGCCATCGTGCGTGTTCGGAATCGAACGATGCCGTTGATACGAC
TAAGGGCAGCTGGTCAAAGCCCCTCTCTATGTACTGCTGCGCACACTGTG
GCAGGGCCGGGAATAAAAAAGTGCCGCTTCGCCGCTGCCGCCTCACGCGC
GCCGCGAGTTACTGTTCCGAACGGTGTTTCCTCGCCGACGGGGAGAGCTG
GCGGGCGAATCTTCAAGCGCGACACGCCCATGTGAACGAGGCGGCTTTCG
GGATTGGTGGTATTTTCCGTAACAGAAAGCTCTTTAAGCGTCTCGCGGTG
TAAACGATCCGGGATCTGAGAGCGTACCTCCGGACGACGAGCTTCGCTTT
CCTGTCCTGAAAAACCCTTTTTTGGCTGTGACCCAGTCTACCTGGCTAGA
AACTGCCGTGTCTTCGGCGCCCAAAACATGGGTGGCCTTCTTCTCTCCCC
GATTCGGCAACCCGGAAGGAACGATGCGAGGCTCCGATCCCGCGCTGTCC
CTTCCTATTCGCGCGCGGTGCGACGCTACGAGAGACTGGCTTGCGAGACT
GTATGCCTTCGCGGTACCGAACCGACGGGCAGTGGAGACATGCCAACGGG
CTATTGAGGCGTGTGGGGGACGGGGGTCCGGGATCGTGGAAGTTGGTGCA
GGTCTTGGGTACTGGAAATGGGTTTTGGAGAACGCGGTAAATGGGGGAGG
TGGTCCGTCACCGACACCCAGTGGCGTAACGGGGGGGGATAATGTCCGAG
TCCGTCCAAAAATAGTCACCGGCGTTGTGATAGACAAGGATGGGATGAGC
CCATTGCGAGTCCTTGCGATCGACAAAGACCCCACAAGACTCCCGAGCCA
CGTAATGCGACGAGATTCGACCGCAAATACCGCCGGTAAAAGCCGTAGCG
GCGAAGGGCAGGGTCGACGTGGCCGTGGGCGAGCTGGTGGGCGTGGAGGG
CGAGGCGGAGCAAACCGGCGAGCCGAACGAAAAGAACGCCGAAATGAGTA
CCATGGCGAAGCGCCCGCTTGGGCGTCTGTTGAAGAGGGGGGACCGGAAC
TGTTACAGTCCCTGAGTGCTGACCACTTTCCAGCCTTGCTTCTGTGTTAC
CCCCCCCCATCGATTAGCAGTGAGAGGAAGGGCGGCAGTACAACGGCATG
CATGGGCGCAGACGCTTTAGGACACTTTTCGGGAAAGTTGGTGCTGTACA
TCGGTGAGGTCGGGGGCGACACGGGCAGCCCCCGCTTGGAGGAGGCTCTG
CAGGCGGATTGGGACATGATTAAGGACGTCGAACTGCCGTGCTTTTCTTC
AACCGCGAATCGCCTCATGGTTTTCACCCGGAAAGGGGGCGTTTTGCCCC
AAACACCGTCTGTGATCACAGCAGAAGACGTTCAAAAGGATGGAGAGCGC
CATCGTGCGTGTTCGGAATCGAACGATGCCGTTGATACGACTAAGGGCAG
CTGGTCAAAGCCCCTCTCTATGTACTGCTGCGCACACTGTGGCAGGGCCG
GGAATAAAAAAGTGCCGCTTCGCCGCTGCCGCCTCACGCGCGCCGCGAGT
TACTGTTCCGAACGGTGTTTCCTCGCCGACGGGGAGAGCTGGCGGGCGAA
TCTTCAAGCGCGACACGCCCATGTGAACGAGGCGGCTTTCGGGATTGGTG
GTATTTTCCGTAACAGAAAGCTCTTTAAGCGTCTCGCGGTGTAA
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