mRNA_H-elongata_contig66417.14239.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66417.14239.1
Unique NamemRNA_H-elongata_contig66417.14239.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: A0A6H5J6V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6V2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 9.730e-26
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:   13 VVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREKQTPRHLR 171
            VVGSSTACVAALDYDLEQL+FSNIGDCGVVVLRHIDSDVAGYMREK+TPRHLR
Sbjct:  555 VVGSSTACVAALDYDLEQLSFSNIGDCGVVVLRHIDSDVAGYMREKKTPRHLR 607
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: D8LCX2_ECTSI (Protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX2_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.700e-25
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:   10 QVVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREKQTPRHLR 171
            +VVGSSTACVAALDYDLEQL+FSNIGDCGVVVLRHIDS+VAGYMREK+TPRHLR
Sbjct:  309 KVVGSSTACVAALDYDLEQLSFSNIGDCGVVVLRHIDSNVAGYMREKKTPRHLR 362
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: A0A836CA81_9STRA (Protein phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA81_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.760e-22
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:   10 QVVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREKQTPRHLR 171
            + VGSSTAC+A LDY L+QLTFSNIGD GVVVLRHIDSD+AGYMRE++TPRHLR
Sbjct:   96 KAVGSSTACIATLDYSLDQLTFSNIGDNGVVVLRHIDSDIAGYMRERRTPRHLR 149
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: W7THC9_9STRA (Protein phosphatase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7THC9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.970e-18
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   10 QVVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREKQTPRHLR 171
            +VVGSSTAC+A LD +L QL+F N+GD G++++RHIDSDVAGYMR+K TPR LR
Sbjct:  445 KVVGSSTACIATLDMELNQLSFCNVGDSGIIIMRHIDSDVAGYMRDKTTPRPLR 498
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: A0A482RSQ1_9ARCH (CBS domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSQ1_9ARCH)

HSP 1 Score: 84.0 bits (206), Expect = 1.730e-17
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   10 QVVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREKQTPRHLRK 174
            ++ G+ST CVA LD  L QL++SN+GDCG++V+RHIDS+ AGYMRE+Q PRHLRK
Sbjct:  404 EINGASTICVATLDKKLSQLSYSNLGDCGLMVVRHIDSETAGYMRERQMPRHLRK 458
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: A0A7R9YFZ0_9STRA (Protein phosphatase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFZ0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.170e-17
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   10 QVVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREKQTPRHLRK 174
            +V GS+TA +A +D +L QL+FSN+GD G+V+LRHIDS VAGYMR+  TPRH+RK
Sbjct:   33 RVPGSATALIATVDTELSQLSFSNVGDAGIVILRHIDSTVAGYMRDHTTPRHMRK 87
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: A0A7S1TY81_9STRA (Protein phosphatase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TY81_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.220e-17
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   10 QVVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREKQTPRHLRK 174
            ++ GS+TA VA LD +L QL+FSN+GD G+VVLRHIDS VAGYMRE+ TPRHLR+
Sbjct:  422 RIPGSATALVATLDTELNQLSFSNVGDAGIVVLRHIDSTVAGYMRERTTPRHLRQ 476
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: A0A7R9YFN6_9STRA (Protein phosphatase n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFN6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.420e-17
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   10 QVVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREKQTPRHLRK 174
            +V GS+TA +A +D +L QL+FSN+GD G+V+LRHIDS VAGYMR+  TPRH+RK
Sbjct:   33 RVPGSATALIATVDTELSQLSFSNVGDAGIVILRHIDSTVAGYMRDHTTPRHMRK 87
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: A0A1Z5JFD8_FISSO (Protein phosphatase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFD8_FISSO)

HSP 1 Score: 72.0 bits (175), Expect = 2.730e-13
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   13 VVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREKQTPR 162
            ++GSSTAC+A  D    QL FSN+GDCG++VLRHIDSDVAG ++  +TPR
Sbjct:  359 IIGSSTACIALFDSLRHQLHFSNLGDCGIIVLRHIDSDVAGSLKRDKTPR 408
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BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Match: A0A7S3PD16_9STRA (Protein phosphatase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD16_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.920e-12
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 VVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYM-REKQTPRHLRK 174
            +VGSSTACVA  D    QL FSN+GD G++VLRHIDSDVAG + RE+  PR  RK
Sbjct:  278 IVGSSTACVALFDSIRHQLHFSNLGDSGIIVLRHIDSDVAGSLKRERHVPRPDRK 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66417.14239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6V2_9PHAE9.730e-2696.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCX2_ECTSI2.700e-2592.59Protein phosphatase n=1 Tax=Ectocarpus siliculosus... [more]
A0A836CA81_9STRA1.760e-2281.48Protein phosphatase n=1 Tax=Tribonema minus TaxID=... [more]
W7THC9_9STRA4.970e-1868.52Protein phosphatase n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A482RSQ1_9ARCH1.730e-1765.45CBS domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7R9YFZ0_9STRA3.170e-1763.64Protein phosphatase (Fragment) n=1 Tax=Pinguiococc... [more]
A0A7S1TY81_9STRA3.220e-1769.09Protein phosphatase n=1 Tax=Phaeomonas parva TaxID... [more]
A0A7R9YFN6_9STRA8.420e-1763.64Protein phosphatase n=2 Tax=Pinguiococcus pyrenoid... [more]
A0A1Z5JFD8_FISSO2.730e-1362.00Protein phosphatase n=2 Tax=Fistulifera solaris Ta... [more]
A0A7S3PD16_9STRA5.920e-1263.64Protein phosphatase (Fragment) n=1 Tax=Amphora cof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66417contigH-elongata_contig66417:2907..3083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue6.5e-21
Seed eggNOG ortholog2880.D8LCX2
Preferred namePPTC7
KEGG koko:K17508
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0631@1,KOG1379@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.2800674-CDS-H-elongata_contig66417:2906..30831622931053.2800674-CDS-H-elongata_contig66417:2906..3083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66417 2907..3083 -
1691679678.827026-CDS-H-elongata_contig66417:2906..30831691679678.827026-CDS-H-elongata_contig66417:2906..3083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66417 2907..3083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66417.14239.1prot_H-elongata_contig66417.14239.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66417 2907..3083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66417.14239.1

>prot_H-elongata_contig66417.14239.1 ID=prot_H-elongata_contig66417.14239.1|Name=mRNA_H-elongata_contig66417.14239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MLLQVVGSSTACVAALDYDLEQLTFSNIGDCGVVVLRHIDSDVAGYMREK
QTPRHLRK*
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mRNA from alignment at H-elongata_contig66417:2907..3083-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66417.14239.1 ID=mRNA_H-elongata_contig66417.14239.1|Name=mRNA_H-elongata_contig66417.14239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig66417:2907..3083- (Himanthalia elongata Himel1 dioecious)
ATGTTGCTGCAGGTGGTAGGCAGCAGCACGGCCTGCGTGGCGGCCCTCGA
CTACGACCTCGAGCAGCTGACGTTCAGCAACATCGGCGACTGCGGAGTGG
TCGTCCTCAGGCACATCGATTCCGACGTGGCGGGTTACATGAGAGAGAAG
CAAACACCGCGGCACCTCAGAAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig66417:2907..3083-

>mRNA_H-elongata_contig66417.14239.1 ID=mRNA_H-elongata_contig66417.14239.1|Name=mRNA_H-elongata_contig66417.14239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig66417:2907..3083- (Himanthalia elongata Himel1 dioecious)
ATGTTGCTGCAGGTGGTAGGCAGCAGCACGGCCTGCGTGGCGGCCCTCGA
CTACGACCTCGAGCAGCTGACGTTCAGCAACATCGGCGACTGCGGAGTGG
TCGTCCTCAGGCACATCGATTCCGACGTGGCGGGTTACATGAGAGAGAAG
CAAACACCGCGGCACCTCAGAAAGTGAATGTTGCTGCAGGTGGTAGGCAG
CAGCACGGCCTGCGTGGCGGCCCTCGACTACGACCTCGAGCAGCTGACGT
TCAGCAACATCGGCGACTGCGGAGTGGTCGTCCTCAGGCACATCGATTCC
GACGTGGCGGGTTACATGAGAGAGAAGCAAACACCGCGGCACCTCAGAAA
GTGA
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