mRNA_H-elongata_contig66392.14235.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: D7FXA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA9_ECTSI) HSP 1 Score: 175 bits (443), Expect = 1.890e-47 Identity = 102/201 (50.75%), Postives = 130/201 (64.68%), Query Frame = 1
Query: 1 QETSSEVASTVWEWPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPRPVLV-----DDASL--PDLGHDGGVGVGDGGTCDSGGRVKRGNRSCEEEPQQKHQP--------------GQFDQIRV-SRAFVGKGYGELAKRLIMRGAMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDVSGS 537
+E+S+ ++ VWEWPLF AG +WTES+M++F VQTYFS EFLAFFETLLQ+ RPVLV DDAS+ P + G D GT D+ +C ++P+ +H P GQFD +RV SR F G Y LA+ LI++GAMPLGLYRP+GTK S L Y VNP++SE+LVEGD FVL+S SC + GS
Sbjct: 715 KESSALTSAGVWEWPLFTAGMVWTESIMEVFEVQTYFSTEFLAFFETLLQMKRPVLVGNELVDDASIMEPAVPPPASSGRDDDGTRDT----TPSAGACGKKPRSRHSPFRGQAGTASTVSPTGQFDMLRVASRKFWGGRYDALARELILQGAMPLGLYRPTGTKGSSLPYTQVNPEVSERLVEGDFAFVLRSRSCSLIGS 911
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.460e-41 Identity = 97/205 (47.32%), Postives = 124/205 (60.49%), Query Frame = 1
Query: 1 QETSSEVASTVWEWPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPRPVLV-----DDASL------PDLGHDGGVGVGDGGTCDSGGRVKRGNRSCEEEPQQKHQP--------------GQFDQIRV-SRAFVGKGYGELAKRLIMRGAMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDVSGS 537
+E+S+ ++ VWEWPLFAAG +WTES+M++F VQTYFS EFLAFFETLLQ+ R VLV DDAS+ P V T +G R K+ P +H P GQFD +RV S F+G Y L + LI++GAMPLGLYRP+GTK S L Y VNP++SE+LV+GD FVL+S +C + GS
Sbjct: 1152 KESSALTSAGVWEWPLFAAGMVWTESIMEVFEVQTYFSTEFLAFFETLLQMKRLVLVGNELVDDASIMEPAVPPPASSGRDVDETRDTTPSAGARGKK--------PPSRHSPIRGQAGTASTVPPTGQFDMLRVASGKFLGGRYDALVRELILQGAMPLGLYRPAGTKGSSLPYTQVNPEVSERLVKGDFAFVLRSGTCSLVGS 1348
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: D7FWQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ5_ECTSI) HSP 1 Score: 108 bits (271), Expect = 1.400e-24 Identity = 77/205 (37.56%), Postives = 98/205 (47.80%), Query Frame = 1
Query: 40 WPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPR---PVLVDDASLPDLGHD---------------------------------GGVGVGDGGTCDSGGRVKR-----GNRSCEEEPQQKHQPG-QFDQIRVSRAFVGKGYGELAKRLIMRGAMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDV 528
WPLFAAG +WT S+MD+FAV+TYF+ L+FFETLLQI P +A+ G V +GD G+ G K G+R +++ ++Q QF +RVS +F GK YG+LA+ LI GAMPLGLYRPSG K S L Y H+NP E L K S V
Sbjct: 199 WPLFAAGGVWTTSIMDVFAVRTYFNAHVLSFFETLLQIHARNPPASDSNANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAVSLGDKGSNAGDGEKKARPSHDGSRHWDDDDSTENQGRCQFAHLRVSASFAGKTYGDLARHLIALGAMPLGLYRPSGHKGSTLAYTHINPRPDEPLQPWPVTAAAKQASSGV 403
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: A0A6H5JQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ48_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.780e-18 Identity = 68/201 (33.83%), Postives = 83/201 (41.29%), Query Frame = 1
Query: 40 WPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIP--RPVLVDDASLPDLGHDGGVGVGDGGTCDSGGRVKRGNRSC------------------------------------EEEPQQKHQPGQFDQIRVSRAFVGKGYGELAKRLIMRGAMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDV 528
WPLFAAG +WT S+MD+FAV+TYF+ L+FFETLLQI P D +++ + QF +RVS +F GK YG+LA+ LI GAMPLGLYRPSG K S L Y H+NP E L A K S V
Sbjct: 1139 WPLFAAGGVWTTSIMDVFAVRTYFNAHVLSFFETLLQIHARNPPASDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDSTENQGRCQFAHLRVSASFAGKTYGDLARHLIALGAMPLGLYRPSGHKGSTLAYTHINPRPDEPLKPWPAAAAAKQASSGV 1339
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: A0A7S4DB56_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB56_HETAK) HSP 1 Score: 76.3 bits (186), Expect = 2.690e-13 Identity = 58/189 (30.69%), Postives = 94/189 (49.74%), Query Frame = 1
Query: 1 QETSSEVASTVWE------WPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPRPVLVDDASLPDLGHDGGVGVGDGGTCDSGGRVKRGNRSCEEEPQQKHQPGQFDQIRVS----RAFVGKGYGELAKRLIMRG-AMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDVSG 534
Q+ ++VAS E WPLFAAGR+++ES++D+ + Y+S + +E +LQ+ +D + +L D D + G + P PG DQI + RA + Y +L + L+ R A+ + LYRP+GT+ S+L Y +NP + +L + D VFVL + D +G
Sbjct: 95 QQVFADVASRASENHQAASWPLFAAGRVFSESMLDILTARLYYSPLEIKLWEQILQVSPQAKLD--IIDELAGD---------DPDVAAALAGGAADDPDLPWAGALPGFLDQIEIEEGFLRAHLNPTYLDLVRFLLQRHRALAVALYRPAGTRGSLLPYVQINPPHNTELRQHDKVFVLNAPGSDFTG 272
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Match: A0A7S3Y312_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y312_HETAK) HSP 1 Score: 76.3 bits (186), Expect = 6.320e-13 Identity = 58/189 (30.69%), Postives = 94/189 (49.74%), Query Frame = 1
Query: 1 QETSSEVASTVWE------WPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQIPRPVLVDDASLPDLGHDGGVGVGDGGTCDSGGRVKRGNRSCEEEPQQKHQPGQFDQIRVS----RAFVGKGYGELAKRLIMRG-AMPLGLYRPSGTKQSILQYAHVNPDISEQLVEGDAVFVLKSLSCDVSG 534
Q+ ++VAS E WPLFAAGR+++ES++D+ + Y+S + +E +LQ+ +D + +L D D + G + P PG DQI + RA + Y +L + L+ R A+ + LYRP+GT+ S+L Y +NP + +L + D VFVL + D +G
Sbjct: 370 QQVFADVASRASENHQAASWPLFAAGRVFSESMLDILTARLYYSPLEIKLWEQILQVSPQAKLD--IIDELAGD---------DPDVAAALAGGAADDPDLPWAGALPGFLDQIEIEEGFLRAHLNPTYLDLVRFLLQRHRALAVALYRPAGTRGSLLPYVQINPPHNTELRQHDKVFVLNAPGSDFTG 547 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66392.14235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66392.14235.1 >prot_H-elongata_contig66392.14235.1 ID=prot_H-elongata_contig66392.14235.1|Name=mRNA_H-elongata_contig66392.14235.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp QETSSEVASTVWEWPLFAAGRIWTESVMDMFAVQTYFSLEFLAFFETLLQback to top mRNA from alignment at H-elongata_contig66392:1554..3015- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66392.14235.1 ID=mRNA_H-elongata_contig66392.14235.1|Name=mRNA_H-elongata_contig66392.14235.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1462bp|location=Sequence derived from alignment at H-elongata_contig66392:1554..3015- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66392:1554..3015- >mRNA_H-elongata_contig66392.14235.1 ID=mRNA_H-elongata_contig66392.14235.1|Name=mRNA_H-elongata_contig66392.14235.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig66392:1554..3015- (Himanthalia elongata Himel1 dioecious)back to top |