mRNA_H-elongata_contig66362.14234.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66362.14234.1
Unique NamemRNA_H-elongata_contig66362.14234.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66362.14234.1 vs. uniprot
Match: D8LM11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM11_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 3.580e-57
Identity = 155/369 (42.01%), Postives = 184/369 (49.86%), Query Frame = 1 
Query:    1 QLYLGVYESEVDAAKAHDRAARFHFAENAVCNFESEQEADRQAALHQQRQLVEQQQLVEGHPH-----------AHLHGGSFSVGREEFDDLEEYHRGLEEA--CSSEDDQC---------------------------------------------CAEGD-SEESGDAYGEDCT-----RSSRSMSSSSASGVS---MLDDLNQIATTKSYLGREVAATIAAVAAHTPISATASIIVPRPAPSGVVMGGG--EVHVPRRDVPQRARCSSGMSSCESDSDFAGVTTSALLEPPAPEGMGFPYAEDLLGYEMQSWFCCEDEDDHHGWGFDGLAPTSSNGWSRSSSGSMSSSLSCDDDYIPSALPPLMGI 900
            +LYLGVYESEVDAAKAHDRAARFHFA++AVCNF+SE EADRQA +H+QRQL+                      A LHGGSFSVGREEFDDLEEYHRG++EA  CSSE+D                                                AEGD S+E GD Y ED        S RSMS S +S +S   M D                                                    ++H  + +  QR RCSSG S C SD     +     +     EGMGFP AEDLLGYEMQSW+CC+D+++       G   T S+G SR+SSGSMSSSLSCDD+Y+ SALPPLMG+
Sbjct:   18 KLYLGVYESEVDAAKAHDRAARFHFADSAVCNFDSEHEADRQAVIHKQRQLLXXXXXXXXXXXXXXXXXXXXXXAQLHGGSFSVGREEFDDLEEYHRGMDEATTCSSEEDDGEGLDNDESLHGDDIDDDIEDSVHGGEEEDHRRGRLDXXXXXXELPAAEGDMSDEGGDRYEEDGVIGGGGTSGRSMSCSYSSAMSTGSMSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLHAQQLEQ-QRGRCSSGESDCSSDFVTPSLLREESMSSTTQEGMGFPVAEDLLGYEMQSWYCCQDDEERSPSTSGG---TYSDGGSRASSGSMSSSLSCDDEYVSSALPPLMGM 382
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BLAST of mRNA_H-elongata_contig66362.14234.1 vs. uniprot
Match: A0A6H5JUY3_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY3_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 2.150e-52
Identity = 162/421 (38.48%), Postives = 189/421 (44.89%), Query Frame = 1 
Query:    1 QLYLGVYESEVDAAKAHDRAARFHFAENAVCNFESEQEADRQAALHQQRQLVEQQQLVEGHPH-----------AHLHGGSFSVGREEFDDLEEYHRGLEEA--CSSEDDQC-----------------------------------------------CAEGD-SEESGDAYGEDCT-----RSSRSMSSSSASGVSM---------LDDLNQIATTKSYLGREVAATIAAVAAHTPISATASIIVPRPAPSGVVMGGGEVHVPRRDVPQRARCSSGMSSCESDSDFAGVTTSALLEPPAPEGMGFPYAEDLLGYEMQSWFCCEDEDDHH----------------------------------------------GWGFDGLAPTSSNGWSRSSSGSMSSSLSCDDDYIPSALPPLMGI 900
            QLYLGVYESEVDAAKAHDRAARFHFA++AVCNF+SE EADRQA +H+QRQL+                      A LHGGSFSVGREEFDDLEEYHRG++EA  CSSE+D                                                  AE D S+E GD Y ED        S RSMS S +S +S                          EVA T+A  +A                         ++H  + +  QR RCSSG S C S+     +     L     EGMGFP AEDLLGYEMQSW+CC+                                                    GWGF   A   S+G SR+SSGSMSSSLSCDD+Y+PSALPPLMG+
Sbjct:  128 QLYLGVYESEVDAAKAHDRAARFHFADSAVCNFDSEHEADRQAVIHKQRQLLXXXXXXXXXXXXXXXXXXXXXXAQLHGGSFSVGREEFDDLEEYHRGMDEATTCSSEEDDGEGLDNEESLHGDDIDDDIDDSVHGEEEDHRRGRXXXRLNGDDDDELPAAECDMSDEGGDRYEEDGVIGGGGSSGRSMSCSYSSAMSTGXXXXXXXXXXXXXXXXXXXXXXXXEVA-TVADGSAFXXXXXXXXXXXXXXXXXXXXXXX-DLHTQQLEQ-QRGRCSSGESDCSSEFVTPSLLREESLSSTTQEGMGFPVAEDLLGYEMQSWYCCQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEELWGTAVGANLGWGFGDFAQMYSDGGSRASSGSMSSSLSCDDEYVPSALPPLMGM 545
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BLAST of mRNA_H-elongata_contig66362.14234.1 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 6.220e-8
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 QLYLGVYESEVDAAKAHDRAARFHFAENAVCNFESEQEADR 123
            QLYLGVYESE++AAKAHDRAARFHF + ++ NF +E EADR
Sbjct:  164 QLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADR 204
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BLAST of mRNA_H-elongata_contig66362.14234.1 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 6.980e-8
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 QLYLGVYESEVDAAKAHDRAARFHFAENAVCNFESEQEADR 123
            QLYLGVYESE++AAKAHDRAARFHF + ++ NF +E EADR
Sbjct:  151 QLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADR 191
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BLAST of mRNA_H-elongata_contig66362.14234.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.940e-7
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 QLYLGVYESEVDAAKAHDRAARFHFAENAVCNF 99
            QLYLGV+ESEVDAAKAHDRAAR HF + A+ NF
Sbjct:   22 QLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54
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BLAST of mRNA_H-elongata_contig66362.14234.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.480e-6
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 QLYLGVYESEVDAAKAHDRAARFHFAENAVCNF 99
            QLYLGV+ESE+DAAKAHDRAAR+HF   A+ NF
Sbjct:   52 QLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66362.14234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LM11_ECTSI3.580e-5742.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUY3_9PHAE2.150e-5238.48AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
D7FZ71_ECTSI6.220e-873.17AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LCQ5_9PHAE6.980e-873.17AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A836CH07_9STRA2.940e-778.79AP2/ERF domain-containing protein (Fragment) n=1 T... [more]
A0A836CI56_9STRA3.480e-675.76AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66362contigH-elongata_contig66362:2362..3348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionAP2/ERF domain protein
Ec32 orthologEc-14_002430.1
Hectar predicted targeting categoryother localisation
Exons2
Model size903
Cds size903
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.841044-CDS-H-elongata_contig66362:2361..31251622931052.841044-CDS-H-elongata_contig66362:2361..3125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66362 2362..3125 +
1691679678.7089412-CDS-H-elongata_contig66362:2361..31251691679678.7089412-CDS-H-elongata_contig66362:2361..3125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66362 2362..3125 +
1622931052.8644638-CDS-H-elongata_contig66362:3209..33481622931052.8644638-CDS-H-elongata_contig66362:3209..3348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66362 3210..3348 +
1691679678.7230165-CDS-H-elongata_contig66362:3209..33481691679678.7230165-CDS-H-elongata_contig66362:3209..3348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66362 3210..3348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66362.14234.1prot_H-elongata_contig66362.14234.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66362 2362..3348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66362.14234.1

>prot_H-elongata_contig66362.14234.1 ID=prot_H-elongata_contig66362.14234.1|Name=mRNA_H-elongata_contig66362.14234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
QLYLGVYESEVDAAKAHDRAARFHFAENAVCNFESEQEADRQAALHQQRQ
LVEQQQLVEGHPHAHLHGGSFSVGREEFDDLEEYHRGLEEACSSEDDQCC
AEGDSEESGDAYGEDCTRSSRSMSSSSASGVSMLDDLNQIATTKSYLGRE
VAATIAAVAAHTPISATASIIVPRPAPSGVVMGGGEVHVPRRDVPQRARC
SSGMSSCESDSDFAGVTTSALLEPPAPEGMGFPYAEDLLGYEMQSWFCCE
DEDDHHGWGFDGLAPTSSNGWSRSSSGSMSSSLSCDDDYIPSALPPLMGI
*
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mRNA from alignment at H-elongata_contig66362:2362..3348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66362.14234.1 ID=mRNA_H-elongata_contig66362.14234.1|Name=mRNA_H-elongata_contig66362.14234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=987bp|location=Sequence derived from alignment at H-elongata_contig66362:2362..3348+ (Himanthalia elongata Himel1 dioecious)
CAGCTCTATCTTGGGGTCTATGAGTCCGAAGTCGACGCTGCCAAGGCGCA
TGACCGCGCGGCCCGCTTCCACTTTGCCGAGAACGCCGTGTGTAACTTCG
AAAGCGAGCAAGAAGCCGATCGCCAGGCGGCTCTTCACCAGCAGCGCCAG
CTCGTCGAGCAGCAGCAGCTCGTGGAGGGCCACCCCCACGCGCATCTCCA
CGGGGGAAGCTTCTCCGTTGGCCGGGAGGAGTTCGATGACCTAGAGGAGT
ACCACCGCGGCCTCGAGGAGGCGTGTTCGTCGGAGGACGACCAGTGCTGC
GCGGAAGGCGATAGTGAAGAGAGCGGAGACGCGTACGGAGAAGACTGCAC
CCGGTCCAGCCGATCGATGTCTTCATCGTCGGCCTCCGGTGTGTCCATGT
TGGACGATCTAAACCAGATCGCAACCACGAAGTCTTATCTAGGGCGAGAG
GTAGCGGCCACCATCGCTGCCGTCGCCGCCCACACCCCCATATCCGCCAC
CGCCTCCATCATTGTCCCTAGGCCGGCTCCTAGCGGAGTCGTGATGGGCG
GCGGCGAGGTGCATGTGCCGCGGCGGGACGTTCCGCAGCGAGCTCGTTGC
AGCAGCGGCATGAGTAGCTGCGAAAGCGATAGTGATTTCGCCGGGGTTAC
CACGTCGGCGCTCCTTGAGCCTCCGGCGCCGGAGGGGATGGGATTCCCCT
ACGCGGAAGACCTGTTGGGCTACGAGATGCAGTCATGGTTTTGCTGTGAA
GACGAAGACGACCAGTCTATGCTGAAGAACCAACAGCCCTTCAGTGGAGG
AAACCTCACCCCGCACTACCAGCCAGCGTCCATGACTGCGGGAGCGAGCC
ATGGCTGGGGCTTCGATGGCCTCGCTCCAACGAGCTCTAACGGATGGAGC
AGGTCCAGCAGTGGCAGCATGTCTAGCAGTCTCTCGTGCGACGATGACTA
CATCCCGAGCGCTCTTCCGCCTCTCATGGGGATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig66362:2362..3348+

>mRNA_H-elongata_contig66362.14234.1 ID=mRNA_H-elongata_contig66362.14234.1|Name=mRNA_H-elongata_contig66362.14234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1806bp|location=Sequence derived from alignment at H-elongata_contig66362:2362..3348+ (Himanthalia elongata Himel1 dioecious)
CAGCTCTATCTTGGGGTCTATGAGTCCGAAGTCGACGCTGCCAAGGCGCA
TGACCGCGCGGCCCGCTTCCACTTTGCCGAGAACGCCGTGTGTAACTTCG
AAAGCGAGCAAGAAGCCGATCGCCAGGCGGCTCTTCACCAGCAGCGCCAG
CTCGTCGAGCAGCAGCAGCTCGTGGAGGGCCACCCCCACGCGCATCTCCA
CGGGGGAAGCTTCTCCGTTGGCCGGGAGGAGTTCGATGACCTAGAGGAGT
ACCACCGCGGCCTCGAGGAGGCGTGTTCGTCGGAGGACGACCAGTGCTGC
GCGGAAGGCGATAGTGAAGAGAGCGGAGACGCGTACGGAGAAGACTGCAC
CCGGTCCAGCCGATCGATGTCTTCATCGTCGGCCTCCGGTGTGTCCATGT
TGGACGATCTAAACCAGATCGCAACCACGAAGTCTTATCTAGGGCGAGAG
GTAGCGGCCACCATCGCTGCCGTCGCCGCCCACACCCCCATATCCGCCAC
CGCCTCCATCATTGTCCCTAGGCCGGCTCCTAGCGGAGTCGTGATGGGCG
GCGGCGAGGTGCATGTGCCGCGGCGGGACGTTCCGCAGCGAGCTCGTTGC
AGCAGCGGCATGAGTAGCTGCGAAAGCGATAGTGATTTCGCCGGGGTTAC
CACGTCGGCGCTCCTTGAGCCTCCGGCGCCGGAGGGGATGGGATTCCCCT
ACGCGGAAGACCTGTTGGGCTACGAGATGCAGTCATGGTTTTGCTGTGAA
GACGAAGACGACCACAGCTCTATCTTGGGGTCTATGAGTCCGAAGTCGAC
GCTGCCAAGGCGCATGACCGCGCGGCCCGCTTCCACTTTGCCGAGAACGC
CGTGTGTAACTTCGAAAGCGAGCAAGAAGCCGATCGCCAGGCGGCTCTTC
ACCAGCAGCGCCAGCTCGTCGAGCAGCAGCAGCTCGTGGAGGGCCACCCC
CACGCGCATCTCCACGGGGGAAGCTTCTCCGTTGGCCGGGAGGAGTTCGA
TGACCTAGAGGAGTACCACCGCGGCCTCGAGGAGGCGTGTTCGTCGGAGG
ACGACCAGTGCTGCGCGGAAGGCGATAGTGAAGAGAGCGGAGACGCGTAC
GGAGAAGACTGCACCCGGTCCAGCCGATCGATGTCTTCATCGTCGGCCTC
CGGTGTGTCCATGTTGGACGATCTAAACCAGATCGCAACCACGAAGTCTT
ATCTAGGGCGAGAGGTAGCGGCCACCATCGCTGCCGTCGCCGCCCACACC
CCCATATCCGCCACCGCCTCCATCATTGTCCCTAGGCCGGCTCCTAGCGG
AGTCGTGATGGGCGGCGGCGAGGTGCATGTGCCGCGGCGGGACGTTCCGC
AGCGAGCTCGTTGCAGCAGCGGCATGAGTAGCTGCGAAAGCGATAGTGAT
TTCGCCGGGGTTACCACGTCGGCGCTCCTTGAGCCTCCGGCGCCGGAGGG
GATGGGATTCCCCTACGCGGAAGACCTGTTGGGCTACGAGATGCAGTCAT
GGTTTTGCTGTGAAGACGAAGACGACCACCATGGCTGGGGCTTCGATGGC
CTCGCTCCAACGAGCTCTAACGGATGGAGCAGGTCCAGCAGTGGCAGCAT
GTCTAGCAGTCTCTCGTGCGACGATGACTACATCCCGAGCGCTCTTCCGC
CTCTCATGGGGATATAGCCATGGCTGGGGCTTCGATGGCCTCGCTCCAAC
GAGCTCTAACGGATGGAGCAGGTCCAGCAGTGGCAGCATGTCTAGCAGTC
TCTCGTGCGACGATGACTACATCCCGAGCGCTCTTCCGCCTCTCATGGGG
ATATAG
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