mRNA_H-elongata_contig66298.14229.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66298.14229.1
Unique NamemRNA_H-elongata_contig66298.14229.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66298.14229.1 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.340e-22
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    7 SGGVEEAERCEGCGRTFAPGRLHSHAKACRSVFLERRPQYDPRAMRAKGTPLEFFQRHIVTA 192
            +GG EE ERC  CGRTFAPGRL SHAKACRSVFLERR  YDP+AMRA+GTPLEFFQ+ I  A
Sbjct: 1058 AGGAEE-ERCGDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAA 1118
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BLAST of mRNA_H-elongata_contig66298.14229.1 vs. uniprot
Match: A0A6H5KQR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.880e-22
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   13 GVEEAERCEGCGRTFAPGRLHSHAKACRSVFLERRPQYDPRAMRAKGTPLEFFQRHIVTA 192
            G  + ERCE CGRTFAPGRL SHAKACRSVFLERR  YDP+AMRA+GTPLEFFQ+ I  A
Sbjct:  261 GGAKFERCEDCGRTFAPGRLRSHAKACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAA 320
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BLAST of mRNA_H-elongata_contig66298.14229.1 vs. uniprot
Match: A0A835Z7V0_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.230e-11
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   28 ERCEGCGRTFAPGRLHSHAKACRSVFLERRPQYDPRAMRAKGTPLEFFQRHIVTAPPAVKKTHRHSSAPV 237
            E+C  CGRTFA GR+ +HA+ CR VF  RRP +D R  R +GTPL F QR   T         R ++AP+
Sbjct:  786 EQCADCGRTFAEGRIDAHARVCRRVFGARRPVFDGRERRLRGTPLAFMQRAEATGGVGGSGGKRAATAPL 855
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66298.14229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFQ9_ECTSI3.340e-2277.42WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KQR3_9PHAE5.880e-2276.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7V0_9STRA2.230e-1147.14WW domain-containing protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66298contigH-elongata_contig66298:1583..2532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.1708925-CDS-H-elongata_contig66298:1582..16691622931052.1708925-CDS-H-elongata_contig66298:1582..1669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66298 1583..1669 +
1691679678.372384-CDS-H-elongata_contig66298:1582..16691691679678.372384-CDS-H-elongata_contig66298:1582..1669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66298 1583..1669 +
1622931052.1890247-CDS-H-elongata_contig66298:2372..25311622931052.1890247-CDS-H-elongata_contig66298:2372..2531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66298 2373..2531 +
1691679678.3829002-CDS-H-elongata_contig66298:2372..25311691679678.3829002-CDS-H-elongata_contig66298:2372..2531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66298 2373..2531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66298.14229.1prot_H-elongata_contig66298.14229.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66298 1583..2531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66298.14229.1

>prot_H-elongata_contig66298.14229.1 ID=prot_H-elongata_contig66298.14229.1|Name=mRNA_H-elongata_contig66298.14229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
EISGGVEEAERCEGCGRTFAPGRLHSHAKACRSVFLERRPQYDPRAMRAK
GTPLEFFQRHIVTAPPAVKKTHRHSSAPVARD
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mRNA from alignment at H-elongata_contig66298:1583..2532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66298.14229.1 ID=mRNA_H-elongata_contig66298.14229.1|Name=mRNA_H-elongata_contig66298.14229.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=950bp|location=Sequence derived from alignment at H-elongata_contig66298:1583..2532+ (Himanthalia elongata Himel1 dioecious)
GAAATTTCTGGTGGTGTGGAGGAGGCGGAACGCTGCGAGGGGTGCGGGAG
AACCTTCGCTCCGGGGAGGCTCCACTCGCACGCGAAGGCCAGTACACGAG
GCCTCGCGCGATGATTTGTACGATTTCGCGAGGTCATCATCTTCGAAGCG
TTCTAGTCGTTGGATGTTTACGCGGTATTCCATTGTGCTACTTTAGGAGA
TGCATGAATCTACGTTAGCGGGTACATGGTGCTACGTTTGAGGCACATAG
AACCTACGTAAGGGGATACATGGTGCTACGTTGGGGGATACATGGTGCTA
CGTTGGGGGATATATGGTGCTACGTTGGGGGATACGTGGTGCTACGTTAG
GGTATACGTGGTGCTACGTTAGGAAATACATGGAGCTTCGTTAGGGTATA
CGTGGTGCTACGTTAGGGTATACGTGGTGCTACGTTAGGAAATACATGGA
GCTGCGTTAGGAGATTCATGGTGCCTACGTTAACCCCTATGGAACTCAAT
CTGTTTTTCACCTACTAAATCAAATACAAAAATTGAAATACAGTTCCTAA
AGGGTTAAGGGATACATGGAGCCTACATAAGAAACATACATGATGTGACG
TTTGGGAATAGATGGTGCTACGTTAGGGGATACATCGAGCCTACGTTAGG
GGATACATGGTGCTAGGTTAGGGTGTTAACCTCATCCCGTGCCTTAAGAA
GGACTGCTGCCCTGTGCCTTAAGATGGACTGCTACCCGATCACCCTCATC
TCACGCGTCCCCATCACCCTCCGTCCATACCTCCCCGCAGGCATGCCGCA
GCGTGTTTCTGGAACGTCGGCCGCAGTACGACCCTCGAGCAATGCGTGCC
AAGGGTACGCCTCTCGAATTCTTCCAGCGACACATCGTCACCGCGCCACC
GGCGGTAAAAAAAACCCATCGCCATTCTTCCGCGCCTGTCGCTAGAGATG
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Coding sequence (CDS) from alignment at H-elongata_contig66298:1583..2532+

>mRNA_H-elongata_contig66298.14229.1 ID=mRNA_H-elongata_contig66298.14229.1|Name=mRNA_H-elongata_contig66298.14229.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig66298:1583..2532+ (Himanthalia elongata Himel1 dioecious)
GAAATTTCTGGTGGTGTGGAGGAGGCGGAACGCTGCGAGGGGTGCGGGAG
AACCTTCGCTCCGGGGAGGCTCCACTCGCACGCGAAGGAAATTTCTGGTG
GTGTGGAGGAGGCGGAACGCTGCGAGGGGTGCGGGAGAACCTTCGCTCCG
GGGAGGCTCCACTCGCACGCGAAGGCATGCCGCAGCGTGTTTCTGGAACG
TCGGCCGCAGTACGACCCTCGAGCAATGCGTGCCAAGGGTACGCCTCTCG
AATTCTTCCAGCGACACATCGTCACCGCGCCACCGGCGGTAAAAAAAACC
CATCGCCATTCTTCCGCGCCTGTCGCTAGAGATGCATGCCGCAGCGTGTT
TCTGGAACGTCGGCCGCAGTACGACCCTCGAGCAATGCGTGCCAAGGGTA
CGCCTCTCGAATTCTTCCAGCGACACATCGTCACCGCGCCACCGGCGGTA
AAAAAAACCCATCGCCATTCTTCCGCGCCTGTCGCTAGAGAT
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