mRNA_H-elongata_contig66269.14226.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66269.14226.1
Unique NamemRNA_H-elongata_contig66269.14226.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: D7G8E9_ECTSI (Mef2, mitochondrial translation elongation factor EF-G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E9_ECTSI)

HSP 1 Score: 455 bits (1170), Expect = 3.240e-151
Identity = 245/341 (71.85%), Postives = 276/341 (80.94%), Query Frame = 1
Query:    1 QGSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDRPRPSGVIPRVSGGRGKGGKAVARRGSSGGGGKDGAEAIVEDVEDGDVVDVDPLDNELVALVFK 1023
            QGSVDSGDT+TDFMPQERERGITIQSAAVTVEWGGGRIN+IDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNK+DR+GA   HV+ TLERRLGV PLPLQ+PVG+GTDFVGMVDLVTMTA+LYQAG  GL +MRA+ARDSV+FVTL LD A+ IFPGT++ A  AR ELLWALA+ DE FAELVL+RD    G   S+D ++  Y+ PEIL+AVRRVCL+R+AVP+LCG+SLRGIGVEPLLDSVS FLPSPLDRPRP+GV+   +   G                     A  E  E G V +VDPL ++LVA VFK
Sbjct:  108 QGSVDSGDTVTDFMPQERERGITIQSAAVTVEWGGGRINVIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKLDRQGADFKHVLGTLERRLGVLPLPLQIPVGTGTDFVGMVDLVTMTAILYQAGADGLGKMRASARDSVTFVTLPLDHANDIFPGTVKRANAARQELLWALADADEAFAELVLERDQR--GGGGSDDANDDLYSLPEILSAVRRVCLSRAAVPVLCGSSLRGIGVEPLLDSVSTFLPSPLDRPRPTGVVREPASRSGXXXXXXXXXXXXXXXXXXXXXAGTE--EGGAVFEVDPLQDDLVAFVFK 444          
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A6H5KKP4_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKP4_9PHAE)

HSP 1 Score: 342 bits (877), Expect = 1.190e-109
Identity = 203/346 (58.67%), Postives = 231/346 (66.76%), Query Frame = 1
Query:    4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDRPRPSGVIPRVSGGRGKGGKAVARRGSSGGGG---KDGAEAIVEDVEDGDVVDVDPLDNELVALVFKVIR 1032
            GSVDSGDT+TDFMPQERERGITIQSAAVTVEWGGGRIN+IDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQT                                                         GMVDLVTMTAVLYQAG  GL +MRA+ARDSV+FVTL LD A+ IFPGT++ A  AR ELLWALA+ DE FAELVL+RD    G   S++ ++  Y+ PEIL+AVRRVCLAR+AVP+LCG+SLRGIGVEPLLDSVS FLPSPLDRPRP+GV+   +   G             G G     GAEA   + E G + +VDPL ++LVA VFKV+R
Sbjct:    2 GSVDSGDTVTDFMPQERERGITIQSAAVTVEWGGGRINVIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQT---------------------------------------------------------GMVDLVTMTAVLYQAGADGLGKMRASARDSVTFVTLPLDHANDIFPGTVKRANAARQELLWALADADEVFAELVLERDQR--GGGGSDNANDDLYSLPEILSAVRRVCLARAAVPVLCGSSLRGIGVEPLLDSVSTFLPSPLDRPRPTGVVREPASRSGXXXXXXXXXXXGEGAGVRAAGGAEAAGTE-EGGAIFEVDPLQDDLVAFVFKVLR 287          
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A835ZDB5_9STRA (Mef2, mitochondrial translation elongation factor EF-G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDB5_9STRA)

HSP 1 Score: 314 bits (804), Expect = 2.020e-97
Identity = 169/292 (57.88%), Postives = 202/292 (69.18%), Query Frame = 1
Query:    1 QGSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDRPRPSGVIPRVSGGR 876
            QGSVD+GDT+TDFMPQERERGITIQSAAV+VEW G  +NLIDTPGHVDF +EVER  RVLDGAVLVLD VAGVQAQTETVWRTA  H +PAIAFVNKMDR+GA     V+TL  RLGV PLP+Q+P+GS   F G VDL+ M  ++YQ G     R      D+V    + L + +   PG   +A  AR ELL  +A  DE F +  L           SE    G Y    +L A+RR+CLA++ +P+LCGA+LRGIGVEPLLDS  AFLPSPLDRP  +GV+P  +GG+
Sbjct:   34 QGSVDTGDTVTDFMPQERERGITIQSAAVSVEWNGHHVNLIDTPGHVDFSIEVERAVRVLDGAVLVLDAVAGVQAQTETVWRTATSHNVPAIAFVNKMDRQGADFNIAVQTLRNRLGVTPLPIQLPIGSEGGFKGAVDLIAMEGLVYQPGG----RWEGDV-DTVELRRVALGELEGGCPGLSAAAAAARAELLMGMAEADEAFMDTYL-----------SEGEAQGAYDVQTLLGALRRICLAQAGIPVLCGAALRGIGVEPLLDSAIAFLPSPLDRPPATGVLPANAGGQ 309          
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A4D9DDG5_9STRA (Tr-type G domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDG5_9STRA)

HSP 1 Score: 278 bits (712), Expect = 3.510e-83
Identity = 156/286 (54.55%), Postives = 196/286 (68.53%), Query Frame = 1
Query:    4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQA------GPYGLTRMRAAA-RDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP--EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
            G VD+GDT+ DF+PQERERGITIQSAA++++W   RIN+IDTPGHVDF +EVER  R+LDGA +V+D VAGVQAQTETVWR A+K+++P IAFVNKMDR+GA     V++L RRLG   +P+Q+P+G+G DF G+VDL+TM  V+++A       P  LT     + R SV      L   DK     L +A EAR  LL ALA+ DE F E  L+R  E     + E+G  G    P   +LAA+RR  LA   VP LCGASL+G GVEPLLDS++AF PSPLDR
Sbjct:   85 GDVDTGDTVMDFLPQERERGITIQSAAISLDWHDTRINIIDTPGHVDFTMEVERAVRILDGAAVVVDAVAGVQAQTETVWRQARKYKVPTIAFVNKMDRDGADFPRAVQSLRRRLGAPAVPVQLPLGAGGDFQGVVDLLTMEEVVWEAPQTSGTNPSPLTPFAPKSKRRSVCLTRRPLAGGDKTKEERLMAAREARVALLEALADADETFMETYLERLDE-----AGEEGLGGTEQLPLVTVLAAIRRASLAGLLVPTLCGASLKGKGVEPLLDSIAAFCPSPLDR 365          
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: W7TIG4_9STRA (Translation elongation factor g n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIG4_9STRA)

HSP 1 Score: 278 bits (712), Expect = 1.270e-81
Identity = 157/286 (54.90%), Postives = 196/286 (68.53%), Query Frame = 1
Query:    4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQA------GPYGLTRMRAAA-RDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP--EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
            G VD+GDT+ DF+PQERERGITIQSAA++++W   RIN+IDTPGHVDF +EVER  RVLDGA +V+D VAGVQAQTETVWR A+K+++P IAFVNKMDR+GA     V++L RRLG   +P+Q+P+G+G DF G+VDL+TM  V+++A       P  LT     + R SV      L   DK     L +A EAR  LL ALA+ DE F E  L+R  E     + E+G  G    P   +LAA+RR  LA   VP LCGASL+G GVEPLLDS++AF PSPLDR
Sbjct:   85 GDVDTGDTVMDFLPQERERGITIQSAAISLDWHDTRINIIDTPGHVDFTMEVERAVRVLDGAAVVVDAVAGVQAQTETVWRQARKYKVPTIAFVNKMDRDGADFPRAVQSLRRRLGAPAVPVQLPLGAGGDFQGVVDLLTMEEVVWEAPQTSGKNPSPLTPSAPKSKRRSVCLTRRPLAGGDKTKEERLMAAREARVALLEALADADETFMETYLERLDE-----AGEEGLGGTEQLPLVTVLAAIRRASLAGLLVPTLCGASLKGKGVEPLLDSIAAFCPSPLDR 365          
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A556UXX2_BAGYA (Ribosome-releasing factor 2, mitochondrial n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556UXX2_BAGYA)

HSP 1 Score: 264 bits (674), Expect = 1.090e-78
Identity = 143/278 (51.44%), Postives = 188/278 (67.63%), Query Frame = 1
Query:    4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP-EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
            G VD GDT+TD+M QERERGITIQSAAVT +W   RINLIDTPGHVDF LEVER  RVLDGAV V D  AGV+AQT TVWR A+KH IP I F+NKMD+ GA +++ V +++ RL V+PLPLQ+P+GSG  FVG+VDL+T   + +        R  + A D  +F T  +  +D   P  L    +AR  L+  +A++D+EFAEL+L            E GDN D     ++  AVRR+ L+R  VP+LCG+SL+  GV+PLLD+++A+LP+P +R
Sbjct:   26 GDVDDGDTVTDYMAQERERGITIQSAAVTFDWNQHRINLIDTPGHVDFTLEVERALRVLDGAVAVFDAAAGVEAQTMTVWRQAEKHNIPCICFLNKMDKPGASMSYSVESIKTRLKVNPLPLQIPIGSGKGFVGLVDLITKQRITW--------RGNSGAGDGRAFETSAIQPSDD--PEFLEKCNQARANLIEQVADLDDEFAELLL-----------GEYGDNFDSVPAVKLQEAVRRLTLSRKGVPVLCGSSLKNKGVQPLLDAITAYLPAPDER 282          
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A6I8PPS3_ORNAN (Tr-type G domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8PPS3_ORNAN)

HSP 1 Score: 256 bits (654), Expect = 3.110e-78
Identity = 143/278 (51.44%), Postives = 184/278 (66.19%), Query Frame = 1
Query:    4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEIL-AAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
            G VD GDT+TDFM QERERGITIQSAAVT +W G R+NLIDTPGHVDF LEVER  RVLDGAV V D  AGV+AQT TVW+ A KH IP I F+NKMD+ GA   + + ++  +L   PL LQ+P+G    FVG+VD+VT   V+++            + D   F    L + +   P  L+ A++AR+ L+  +A++D+EFAELVL            E  +N D  + E L AAVRRV LAR+AVP+LCG+SLR  GV+PLLD+V+ +LPSP +R
Sbjct:   56 GDVDEGDTVTDFMAQERERGITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERSLRVLDGAVAVFDASAGVEAQTLTVWKQADKHHIPRICFLNKMDKTGASFTYAIESIREKLKAKPLLLQLPIGEAKSFVGLVDVVTKEKVIWKP--------TTDSDDGKHFKRELLSETND--PELLKEASDARNALIEQIADLDDEFAELVL-----------GEFSENFDLLSAEKLQAAVRRVTLARTAVPVLCGSSLRNKGVQPLLDAVTMYLPSPDER 312          
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A1S3KY81_SALSA (Ribosome-releasing factor 2, mitochondrial n=27 Tax=Salmonidae TaxID=8015 RepID=A0A1S3KY81_SALSA)

HSP 1 Score: 262 bits (669), Expect = 1.930e-77
Identity = 143/278 (51.44%), Postives = 189/278 (67.99%), Query Frame = 1
Query:    4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP-EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
            G VD GDT+TDFM QERERGITIQSAAVT +W   RINLIDTPGHVDF LEVER  RVLDGAV V D  AGV+AQT TVWR A+KH +P I F+NKMD+ GA L   + +++++L  +P+ LQ+P+GSG  F G++DL+T   + +        R+++ A D   F T +L  +D   P  L+ A EAR  L+  +A++D+EFAEL+L+  GE           N D   P ++  AVRRV LAR  VP+LCG+SLR  GV+PLLD+++A+LP+P +R
Sbjct:   94 GDVDDGDTVTDFMDQERERGITIQSAAVTFDWKKHRINLIDTPGHVDFTLEVERALRVLDGAVAVFDASAGVEAQTLTVWRQAEKHHVPCICFLNKMDKPGASLHFSIESIKKKLKANPVLLQIPIGSGKSFTGLIDLITNQQMTW--------RVKSRAEDGRVFETKSLSQSDD--PELLQDAMEARAALIEQVADLDDEFAELLLEGYGE-----------NFDAVPPAKLQEAVRRVTLARKGVPVLCGSSLRNKGVQPLLDAITAYLPAPNER 350          
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: A0A3P8XAH7_ESOLU (Ribosome-releasing factor 2, mitochondrial n=7 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XAH7_ESOLU)

HSP 1 Score: 261 bits (667), Expect = 3.520e-77
Identity = 143/278 (51.44%), Postives = 190/278 (68.35%), Query Frame = 1
Query:    4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTP-EILAAVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
            G VD GDT+TDFM QERERGITIQSAAVT +W   RINLIDTPGHVDF LEVER  RVLDGAV V D  AGV+AQT TVWR AQKH +P I F+NKMD+ GA L   + +++++L V+P+ +Q+P+GSG  F G+VDL+T   + +        R+++ A D   F T  L  +D   P  L+ A EAR  L+  +A++D+EFAEL+L           ++ G++ D   P ++  AVRRV LAR  VP+LCG+SLR  GV+PLLD+++A+LP+P +R
Sbjct:   93 GDVDDGDTVTDFMVQERERGITIQSAAVTFDWKQHRINLIDTPGHVDFTLEVERALRVLDGAVAVFDASAGVEAQTLTVWRQAQKHNVPCICFLNKMDKPGASLHFSIESIKKKLKVEPVLIQIPIGSGKSFTGLVDLITKQQLTW--------RVKSRAEDGRVFETEPLSQSDD--PKLLQEAMEARAALIEKVADLDDEFAELLL-----------ADYGEDFDAIPPAKLQEAVRRVTLARKGVPVLCGSSLRNKGVQPLLDAITAYLPAPNER 349          
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Match: UPI00087867D7 (ribosome-releasing factor 2, mitochondrial isoform X3 n=1 Tax=Scleropages formosus TaxID=113540 RepID=UPI00087867D7)

HSP 1 Score: 256 bits (653), Expect = 8.280e-77
Identity = 142/278 (51.08%), Postives = 186/278 (66.91%), Query Frame = 1
Query:    4 GSVDSGDTMTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARVLDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVVRTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRAAARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVLKRDGENDGSDSSEDGDNGDYTTPEILA-AVRRVCLARSAVPILCGASLRGIGVEPLLDSVSAFLPSPLDR 834
            G VD GDT+TDFM QERERGITIQSAAVT +W   RINLIDTPGHVDF LEVER  RVLDGAV V D  AGV+AQT TVWR A KH +P + F+NKMD+ GA L++ V +++++L  +P+ LQ+P+GSG  F G+V+LVT   +++        R+         FVT  L  +D   P  LR   EAR+ L+  +A++D+EFAEL+L            E  +N D   PE L  AVRRV LA+  VP+LCG++LR  GV+PLLD+++A+LP+P +R
Sbjct:   94 GDVDDGDTVTDFMAQERERGITIQSAAVTFDWKEHRINLIDTPGHVDFTLEVERALRVLDGAVAVFDASAGVEAQTLTVWRQADKHHVPRVCFLNKMDKPGANLSYSVESIKKKLKANPILLQIPIGSGKGFTGLVNLVTSQRMMWPQSDDSNGRV---------FVTKPLSSSDD--PELLRHVREARNNLIEQVADLDDEFAELLL-----------GEFSENFDAVPPEKLQMAVRRVTLAQKGVPVLCGSALRNKGVQPLLDAITAYLPAPNER 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66269.14226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8E9_ECTSI3.240e-15171.85Mef2, mitochondrial translation elongation factor ... [more]
A0A6H5KKP4_9PHAE1.190e-10958.67Tr-type G domain-containing protein n=1 Tax=Ectoca... [more]
A0A835ZDB5_9STRA2.020e-9757.88Mef2, mitochondrial translation elongation factor ... [more]
A0A4D9DDG5_9STRA3.510e-8354.55Tr-type G domain-containing protein n=1 Tax=Nannoc... [more]
W7TIG4_9STRA1.270e-8154.90Translation elongation factor g n=1 Tax=Nannochlor... [more]
A0A556UXX2_BAGYA1.090e-7851.44Ribosome-releasing factor 2, mitochondrial n=1 Tax... [more]
A0A6I8PPS3_ORNAN3.110e-7851.44Tr-type G domain-containing protein n=1 Tax=Ornith... [more]
A0A1S3KY81_SALSA1.930e-7751.44Ribosome-releasing factor 2, mitochondrial n=27 Ta... [more]
A0A3P8XAH7_ESOLU3.520e-7751.44Ribosome-releasing factor 2, mitochondrial n=7 Tax... [more]
UPI00087867D78.280e-7751.08ribosome-releasing factor 2, mitochondrial isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66269contigH-elongata_contig66269:285..2610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score440.7
Seed ortholog evalue6.4e-121
Seed eggNOG ortholog2880.D7G8E9
Preferred nameGFM2
KEGG koko:K02355
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019538,GO:0022411,GO:0031974,GO:0032543,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1903008
EggNOG free text desc.Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation
EggNOG OGsCOG4108@1,KOG0464@2759
Ec32 ortholog descriptionMef2, mitochondrial translation elongation factor EF-G
Ec32 orthologEc-14_002790.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Exons5
Model size1053
Cds size1026
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66269.14226.1prot_H-elongata_contig66269.14226.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66269 285..2583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.6853638-CDS-H-elongata_contig66269:284..7311622931051.6853638-CDS-H-elongata_contig66269:284..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 285..731 -
1691679678.1960397-CDS-H-elongata_contig66269:284..7311691679678.1960397-CDS-H-elongata_contig66269:284..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 285..731 -
1622931051.7108226-CDS-H-elongata_contig66269:999..11201622931051.7108226-CDS-H-elongata_contig66269:999..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 1000..1120 -
1691679678.2093606-CDS-H-elongata_contig66269:999..11201691679678.2093606-CDS-H-elongata_contig66269:999..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 1000..1120 -
1622931051.7374687-CDS-H-elongata_contig66269:1420..15331622931051.7374687-CDS-H-elongata_contig66269:1420..1533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 1421..1533 -
1691679678.2214618-CDS-H-elongata_contig66269:1420..15331691679678.2214618-CDS-H-elongata_contig66269:1420..1533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 1421..1533 -
1622931051.7586203-CDS-H-elongata_contig66269:1961..21011622931051.7586203-CDS-H-elongata_contig66269:1961..2101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 1962..2101 -
1691679678.2313824-CDS-H-elongata_contig66269:1961..21011691679678.2313824-CDS-H-elongata_contig66269:1961..2101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 1962..2101 -
1622931051.776144-CDS-H-elongata_contig66269:2378..25831622931051.776144-CDS-H-elongata_contig66269:2378..2583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 2379..2583 -
1691679678.2428517-CDS-H-elongata_contig66269:2378..25831691679678.2428517-CDS-H-elongata_contig66269:2378..2583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66269 2379..2583 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.788278-UTR-H-elongata_contig66269:2583..26101622931051.788278-UTR-H-elongata_contig66269:2583..2610Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66269 2584..2610 -
1691679678.2538204-UTR-H-elongata_contig66269:2583..26101691679678.2538204-UTR-H-elongata_contig66269:2583..2610Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66269 2584..2610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66269.14226.1

>prot_H-elongata_contig66269.14226.1 ID=prot_H-elongata_contig66269.14226.1|Name=mRNA_H-elongata_contig66269.14226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=342bp
MTDFMPQERERGITIQSAAVTVEWGGGRINLIDTPGHVDFGLEVERCARV
LDGAVLVLDGVAGVQAQTETVWRTAQKHEIPAIAFVNKMDREGACLAHVV
RTLERRLGVDPLPLQMPVGSGTDFVGMVDLVTMTAVLYQAGPYGLTRMRA
AARDSVSFVTLTLDDADKIFPGTLRSATEARHELLWALANVDEEFAELVL
KRDGENDGSDSSEDGDNGDYTTPEILAAVRRVCLARSAVPILCGASLRGI
GVEPLLDSVSAFLPSPLDRPRPSGVIPRVSGGRGKGGKAVARRGSSGGGG
KDGAEAIVEDVEDGDVVDVDPLDNELVALVFKVIRCGCGKA*
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mRNA from alignment at H-elongata_contig66269:285..2610-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66269.14226.1 ID=mRNA_H-elongata_contig66269.14226.1|Name=mRNA_H-elongata_contig66269.14226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2326bp|location=Sequence derived from alignment at H-elongata_contig66269:285..2610- (Himanthalia elongata Himel1 dioecious)
CAGGGTTCCGTAGACTCCGGGGACACAATGACGGATTTCATGCCGCAGGA GCGTGAGCGTGGCATAACAATTCAGAGCGCCGCCGTCACGGTAGAGTGGG GTGGGGGCAGAATAAACCTCATCGACACCCCGGGTCACGTCGATTTCGGC CTTGAGGTGGAACGATGCGCCCGTGTGTTGGACGGGGCAGTCCTCGTCCT CGACGGCGTCGCGGGGGTACAGGCACAAACAGGTGAGCGCGATTATTTCT CTCCAAACAGCCGCGATTGTTGATATGCAATGTGATCTTGCGTCGAAGTT TGCGCTCCTCGCATTGAACCTGCCGGCTCTAGGTTTAGCTCGAAGTAGTC TGTATTAGCTATTATCACTGCATGACATAATTAAGAATAAACACCAGGGC GTGCGGAAGTCGTCGATGCTCCATTTGAAGAAGTGTTGCTCATGGTCTCA TCCTCTTCTACACTTTCACTTTGTTTTTCTAAATCGGTGGAATTTATGGC GACGCACAGAAACGGTGTGGCGCACTGCGCAAAAACACGAGATCCCGGCG ATTGCGTTCGTGAACAAAATGGACCGAGAAGGAGCCTGCCTTGCACACGT CGTTCGTACCCTGGAGCGTCGGTTGGGTGTTGATCCCCTTCCGCTCCAGG TCAGCGACTACCGTAACAGCATCGAAGCCGCCGCTACGTTCGAGAATAAT CTCTATTGCGTAGTGACTAGCGCCGAGCTCCACGAAATCAGCCTTCGTGA GTTTCGAAGCCAGTATGTTGTACTGGGGTGAAGCGAGCGATGTCTTTGGG TGAAATCTAATGGTGCTAAGAATGCGTGGATGTTCGGAGGGTTTTACTGA GTTCATATCTTTTAAAAATATAAACAGCACACACGCTATTTTGGAATTTC GCGTTTTTGTCGCTTGGCTGAAATTATGTGTTTTATGTCCGCTGCTTCCT GCTTGAGCAAACGGCTGCAACCTATATTAATTCCCACTTTATATTTTCGC CGCCTCCGCCGCTTTTGCCCGACCGCCTCCAATTCATGATTTGCTTATTG GGTTTTAATTGTTCCCGCTTTATGCAGATGCCTGTGGGTTCTGGCACTGA TTTTGTCGGAATGGTAGATCTGGTGACGATGACGGCCGTCCTCTATCAGG CGGGGCCCTACGGCCTGACTCGTATGCGTGCGGCCGCCAGGTAATTTATA TAATTTTAGTGCTTGAGCCGTAGAGGGAAGGGGGGTCAAGGAAAGTGATC GAGGCTAGAAGGAAAATCTTAAAACGTAAACGAAAATTTTGGGCATTCTC GCTCTTAACACCAGTTGGGCGCATGTCGTCTGAATGCGATTGCCGCCTCG GTTAGAGTTCGATTGACAACATTGGTTGTTTAATTTCCCTTTCGACGTCG AACCGCAAACCTTCCCTATCCCGACGCGCCCATAGTTTATTCGTGTCCTT CCGGCCGCGTACCGTTTGCGCGCCTGGAAACGAGTCGCAGGGATAGCGTT TCCTTCGTGACTCTCACCCTGGACGACGCGGACAAAATATTTCCGGGAAC CTTGAGGAGTGCGACGGAAGCGAGGCACGAACTGCTTTGGGCATTAGCCA ACGTCGACGAGGTGAACAAACAAGACAATTCTAAAAAATGGGGGCACTGG AGATTTTTCTGGTGTGATCCATGACTTAATTTTCTCTTCATCCGTCCCCG ATATGATCTACACGGGGGAAACATGTGGTGCTTTACACTCTGGAGTATAT GTTAGGGAGTGCCATGTTGCAAAGCAGAAGGGGAACATTTTCTCGACGGT TCGTAACCATTTGTGTTGCCTGCTACTTTGGCCGCGACGACTCCGATGCC GGTACTTATCTCGAATCCATTACACGAAGGAGTTTGCCGAGCTTGTTTTG AAGCGAGACGGGGAAAATGATGGAAGCGACTCAAGCGAAGACGGCGATAA CGGAGACTACACAACGCCCGAGATACTCGCGGCCGTGAGGCGCGTCTGTC TGGCCCGTTCCGCCGTGCCCATACTTTGCGGCGCTTCGCTCCGGGGCATC GGTGTGGAGCCCTTGCTCGACTCCGTCTCAGCGTTCCTTCCGTCGCCGCT TGACCGACCGCGACCGAGCGGGGTCATTCCCCGAGTTTCGGGCGGTCGTG GGAAAGGCGGAAAGGCGGTGGCTCGGAGAGGAAGCAGCGGCGGCGGGGGA AAGGACGGTGCTGAGGCGATTGTTGAAGACGTCGAGGATGGTGACGTTGT CGACGTAGACCCCCTAGATAACGAACTGGTGGCACTGGTTTTCAAGGTGA TACGTTGTGGTTGCGGGAAAGCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig66269:285..2610-

>mRNA_H-elongata_contig66269.14226.1 ID=mRNA_H-elongata_contig66269.14226.1|Name=mRNA_H-elongata_contig66269.14226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2052bp|location=Sequence derived from alignment at H-elongata_contig66269:285..2610- (Himanthalia elongata Himel1 dioecious)
ATGACGGATTTCATGCCGCAGGAGCGTGAGCGTGGCATAACAATTCAGAG
CGCCGCCGTCACGGTAGAGTGGGGTGGGGGCAGAATAAACCTCATCGACA
CCCCGGGTCACGTCGATTTCGGCCTTGAGGTGGAACGATGCGCCCGTGTG
TTGGACGGGGCAGTCCTCGTCCTCGACGGCGTCGCGGGGGTACAGGCACA
AACAGATGACGGATTTCATGCCGCAGGAGCGTGAGCGTGGCATAACAATT
CAGAGCGCCGCCGTCACGGTAGAGTGGGGTGGGGGCAGAATAAACCTCAT
CGACACCCCGGGTCACGTCGATTTCGGCCTTGAGGTGGAACGATGCGCCC
GTGTGTTGGACGGGGCAGTCCTCGTCCTCGACGGCGTCGCGGGGGTACAG
GCACAAACAGAAACGGTGTGGCGCACTGCGCAAAAACACGAGATCCCGGC
GATTGCGTTCGTGAACAAAATGGACCGAGAAGGAGCCTGCCTTGCACACG
TCGTTCGTACCCTGGAGCGTCGGTTGGGTGTTGATCCCCTTCCGCTCCAG
AAACGGTGTGGCGCACTGCGCAAAAACACGAGATCCCGGCGATTGCGTTC
GTGAACAAAATGGACCGAGAAGGAGCCTGCCTTGCACACGTCGTTCGTAC
CCTGGAGCGTCGGTTGGGTGTTGATCCCCTTCCGCTCCAGATGCCTGTGG
GTTCTGGCACTGATTTTGTCGGAATGGTAGATCTGGTGACGATGACGGCC
GTCCTCTATCAGGCGGGGCCCTACGGCCTGACTCGTATGCGTGCGGCCGC
CAGATGCCTGTGGGTTCTGGCACTGATTTTGTCGGAATGGTAGATCTGGT
GACGATGACGGCCGTCCTCTATCAGGCGGGGCCCTACGGCCTGACTCGTA
TGCGTGCGGCCGCCAGGGATAGCGTTTCCTTCGTGACTCTCACCCTGGAC
GACGCGGACAAAATATTTCCGGGAACCTTGAGGAGTGCGACGGAAGCGAG
GCACGAACTGCTTTGGGCATTAGCCAACGTCGACGAGGGATAGCGTTTCC
TTCGTGACTCTCACCCTGGACGACGCGGACAAAATATTTCCGGGAACCTT
GAGGAGTGCGACGGAAGCGAGGCACGAACTGCTTTGGGCATTAGCCAACG
TCGACGAGGAGTTTGCCGAGCTTGTTTTGAAGCGAGACGGGGAAAATGAT
GGAAGCGACTCAAGCGAAGACGGCGATAACGGAGACTACACAACGCCCGA
GATACTCGCGGCCGTGAGGCGCGTCTGTCTGGCCCGTTCCGCCGTGCCCA
TACTTTGCGGCGCTTCGCTCCGGGGCATCGGTGTGGAGCCCTTGCTCGAC
TCCGTCTCAGCGTTCCTTCCGTCGCCGCTTGACCGACCGCGACCGAGCGG
GGTCATTCCCCGAGTTTCGGGCGGTCGTGGGAAAGGCGGAAAGGCGGTGG
CTCGGAGAGGAAGCAGCGGCGGCGGGGGAAAGGACGGTGCTGAGGCGATT
GTTGAAGACGTCGAGGATGGTGACGTTGTCGACGTAGACCCCCTAGATAA
CGAACTGGTGGCACTGGTTTTCAAGGTGATACGTTGTGGTTGCGGGAAAG
CGTAGGAGTTTGCCGAGCTTGTTTTGAAGCGAGACGGGGAAAATGATGGA
AGCGACTCAAGCGAAGACGGCGATAACGGAGACTACACAACGCCCGAGAT
ACTCGCGGCCGTGAGGCGCGTCTGTCTGGCCCGTTCCGCCGTGCCCATAC
TTTGCGGCGCTTCGCTCCGGGGCATCGGTGTGGAGCCCTTGCTCGACTCC
GTCTCAGCGTTCCTTCCGTCGCCGCTTGACCGACCGCGACCGAGCGGGGT
CATTCCCCGAGTTTCGGGCGGTCGTGGGAAAGGCGGAAAGGCGGTGGCTC
GGAGAGGAAGCAGCGGCGGCGGGGGAAAGGACGGTGCTGAGGCGATTGTT
GAAGACGTCGAGGATGGTGACGTTGTCGACGTAGACCCCCTAGATAACGA
ACTGGTGGCACTGGTTTTCAAGGTGATACGTTGTGGTTGCGGGAAAGCGT
AG
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