mRNA_H-elongata_contig66258.14224.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66258.14224.1
Unique NamemRNA_H-elongata_contig66258.14224.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 5.220e-41
Identity = 137/443 (30.93%), Postives = 210/443 (47.40%), Query Frame = 1
Query:    7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGLK--IGVICTNGGGEWHG-QFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
            E W  ++G   HMT   A ++D    P    V   GG    ++  G L L+     + F+     + LK+V + PNLG +NL S     +F   +         +     G   F    +  +G+L       +A+   L +    T LAA T   P+     D+ +FH +  H  + +   TA+  G +L G    C  CS ++  +  + + T++R+ +  GR+F+ L G     S+GG  + M+  DDFTR   +  LK+KSDA  A R  +    A +G+   + ++ ++ GGE+ G +F S   +L IK+E TP Y+PQYN V ER L L+ +  +A       L   V   K+D+LWAEA+ +AC+  N     +     SPYE+WY   P      PF    Y R  +P  KL P+G SC  +G + D PRD  RV
Sbjct:  523 EDWYADTGTAFHMTDSLACMKDLK--PCHKSVNGIGGVSCEISFSGTLELVFVTADSEFS-----MELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFKGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWY-GEPRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 941          
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 7.290e-41
Identity = 137/443 (30.93%), Postives = 210/443 (47.40%), Query Frame = 1
Query:    7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGLK--IGVICTNGGGEWHG-QFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
            E W  ++G   HMT   A ++D    P    V   GG    ++  G L L+     + F+     + LK+V + PNLG +NL S     +F   +         +     G   F    +  +G+L       +A+   L +    T LAA T   P+     D+ +FH +  H  + +   TA+  G +L G    C  CS ++  +  + + T++R+ +  GR+F+ L G     S+GG  + M+  DDFTR   +  LK+KSDA  A R  +    A +G+   + ++ ++ GGE+ G +F S   +L IK+E TP Y+PQYN V ER L L+ +  +A       L   V   K+D+LWAEA+ +AC+  N     +     SPYE+WY   P      PF    Y R  +P  KL P+G SC  +G + D PRD  RV
Sbjct:  230 EDWYADTGTAFHMTDSLACMKDLK--PCHKSVNGIGGVSCEISFSGTLELVFVTADSEFS-----VELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFKGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWY-GEPRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 648          
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.430e-40
Identity = 146/457 (31.95%), Postives = 211/457 (46.17%), Query Frame = 1
Query:    7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPEN--GLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFA---PEGLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRVRNLTTGQILNRS 1320
            E W  ++G   HMT   + ++D    P    V   G     VA  G L L+     + F+     + LK+V +  NLG +N+ S    +  FD      P         G M  F   +  +N  G+L       +A+   L +    T LAA T   P+     DI +FH +  H  E +   TA+  G +L G    C  CS S+  R  + + T+ R+ +  GR+F+ L G     S+GG  + M+  DDFTR   +  LK +SDA  A R  +    A   P  ++I V   NGG  + G+F S   +L IK+E TP Y+PQYN V ER L L+ +  +A       L   V   K+D+LWAEA+ +AC+  N     +     SPYE+WY   P      PF    Y R  +P  KL P+G SC  +G + D PRD  RV  LT  + + ++
Sbjct:  111 EDWYADTGTAFHMTDSLSCMKDLK--PCHKSVNGIGSVSCEVAFSGTLELVFVTADSEFS-----VELKNVLYSQNLG-YNIFSP---SAEFDGESWNGPGGP-----DGVMTAFNGQVTFQNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI-VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWY-GEPRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRARTIQKT 539          
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.890e-39
Identity = 110/310 (35.48%), Postives = 154/310 (49.68%), Query Frame = 1
Query:  406 VATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFA---PEGLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
            +A+   L +    T LAA T   P+     DI +FH +  H  E +   TA+  G +L G    C  CS S+  R  + + T+ R+ +  GR+F  L G     S+GG  + ++  DDFTR   +  L+ KSDA +A R  +    A   P  ++I V   NGG  + G F S   +L IK+E TP Y+PQYN V ER L L+ +  +A       L   V   K+D+LWAEA+ +AC+  N     +     SPYE+WY   P      PF    Y R  +P  KL P+G SC  +G + D PRD  RV
Sbjct:    3 IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWY-GEPRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 309          
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.140e-38
Identity = 136/446 (30.49%), Postives = 210/446 (47.09%), Query Frame = 1
Query:    7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPEN--GLL-----EIKVRCHVATKSGL--SKPPTETALAATQRGPQDIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGLK--IGVICTNGGGEWHG-QFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
            E W  ++G   HMT   + ++D    P    V+  GG    +   G L L+     + F      + L++V + PNLG +NL S    +  FD     Y     +    G M  F   +  +N  G+L      ++  C  +  + L  S P  E+ +        D+ +FH +  H  E +   TA+  G++L+G    C  CS S+  +  +   T+ R+ +  GR+F+ L G     S+GG  + M+  DDFTR   +  LK KSDA +A R  +    A +G+   + ++ ++ GGE+ G +F S   +L IK+E TP Y+PQYN V ER L L+    +A       L   V   K+DRLWAEA+ +AC+  N     +     SPYE+W+    +     PF    Y R  +P  KL P+G +C  +G + D PRD  RV
Sbjct:  429 EDWYADTGTAFHMTDRLSCMKDLK--PCHKNVKGIGGVTCEIEFSGTLELVFVTADSQFP-----VELENVLYSPNLG-YNLFSP---SAEFDGESWNY-----LGGPDGVMTAFNGHVTFQNLDGMLISPAYRLENNCVGSVLAALTPSNPKHESKM--------DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWH-GEASHARPYPFLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRV 847          
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 5.640e-38
Identity = 135/417 (32.37%), Postives = 193/417 (46.28%), Query Frame = 1
Query:   85 PAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFA---PEGLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
            P    V   GG    VA  G L L+     + F+     + LK+V + PNLG +NL S     +F   +         +     G   F    +  +G+L       +A+   L +    T LAA T   P+     DI +FH +  H  E +   TA+  G +L G    C  CS S+  R  + + T+ R+ +  GR+F+ L G     S+GG  + M+  DDFTR   +  L+ KSDA +A R  +    A   P  ++I V   NGG  + G+F S   +L IK+E TP Y+PQYN V ER L L+ +  +A       L   V   K+D+LWAEA+ +AC+  N     +      PYE+WY   P      PF    Y R  +P  KL P+G SC  +G + D PRD  RV
Sbjct:   13 PCHKSVNGIGGVSCEVAFSGTLELVFVTADSEFS-----VELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFNGQVTF----QNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWY-GEPRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 407          
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 6.220e-38
Identity = 140/446 (31.39%), Postives = 210/446 (47.09%), Query Frame = 1
Query:    7 EFWANESGITKHMTQDPAGLEDYTAAPAGDGVESTGGTLLPVAGYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPEN--GLLEIKVRCHVATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGLK--IGVICTNGGGEWHG-QFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCR-RPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
            E W  ++G   +MT   + ++D    P  + V+  GG    VA  G L +      + F+       LK+V + P LG +NL S     +F   +              G M  F   +  +N  G+L       VAT   L      + LAA T   P+     D+  FH + GH  E +   TA+  G++L+G    C  CS  +  R A+   T N + +  GR+F+ L G     S+GG  + M+  DDFTR   +  L+ KSDA +A R  + +  A +G+   I ++ ++ GGE+ G +F S   +L IK+E TP ++P++N V ER L L+ +  +A       L   V   K+DRLWAEA+ +AC+  N     +     SPYE+WY   RP      PF    Y +  +P  KL P+G SC  +G + D PRD  RV
Sbjct:  250 EDWYADTGTAFNMTDSLSCMKDVN--PCHNKVKGIGGVTCEVALSGTLEVAFVSADSEFS-----AELKNVLYAPKLG-YNLFSPS--AEFDGESWNGLGGP------DGVMTAFHGHVTFQNFDGML-------VATAYRLGHNSIGSVLAALTPSNPKRVKIMDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPY--PFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 668          
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.340e-37
Identity = 128/370 (34.59%), Postives = 177/370 (47.84%), Query Frame = 1
Query:  100 VESTGGTLLPVA--GYGHLRL--LVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLLEIKVRCHVATKSGLSKPPTETALAATQRGPQDIMKFHQVLGHPAEQITCNTARMAGVQLSG-IWRPCVHCSESRMRRYAVPKSTENRAG-RAGRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPE-GLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVALLRGVMEGKSDR-----LWAEAIAYACDMWNRCTSYSLDSG-TSPYELWYCRRPTFDNIPPF 1170
            V+  GG   PV   GYG + +  L + G+         + + + AHVP    HNLLS   L +    T       + +  R GG   F     P  G L  +    +  K  ++   T     A    P D+   H   GH  E++   TA+  GVQL+G    PC+ CS S+ +   + KST+ RA  +  RLF+ L G     S+GGN + ++  DD TR+  V  LK+KSDA  A    + DY A     ++ V  T+GGGE+ GQF     + GIK+E TPP TP+YN V ERAL LL D  +A      E   D      LWAEAI+ AC   N CT+ + + G  SP EL++   P   +  PF
Sbjct:   18 VKGIGGNNAPVPPLGYGDVTVVFLTEGGRV-------PVLILNAAHVPE-SPHNLLSLSALAEE-GHTYSGQKGGLTLTTRAGGKVWF-----PRPGKLLTQEGYQIEPKVDIACAATIVPGDAKAATPTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF 372          
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.680e-36
Identity = 111/310 (35.81%), Postives = 155/310 (50.00%), Query Frame = 1
Query:  406 VATKSGLSKPPTETALAA-TQRGPQ-----DIMKFHQVLGHPAEQITCNTARMAGVQLSGIWRPCVHCSESRMRRYAVPKSTENRAGRA-GRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFA---PEGLKIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVA-------LLRGVMEGKSDRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRV 1284
            +A+   L +    T LAA T   P+     DI +FH +  H  E +   TA+  G +L G    C  CS S+  R  +   T+ R+ +  GR+F+ L G     S+GG  + M+  DDFTR   +  L+ KSDA +A R  +    A   P  ++I V   NGG  + G+F S   +L IK+E TP Y+PQYN V ER L L+ +  +A       L   V   K+D+LWAEA+ +AC+  N     +     SPYE+WY   P      PF    Y R  +P  KL P+G SC  +G + D PRD  RV
Sbjct:  156 IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWY-GEPRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 462          
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.270e-32
Identity = 132/432 (30.56%), Postives = 194/432 (44.91%), Query Frame = 1
Query:  100 VESTGGTLLPVA--GYGHLRLLVDQGKNNFANSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDATMRVYPAAVLIRPRRGGMPLFFCPLRPENGLL------EIKVRCHVATKSGLSKPPTETALAATQRGPQDIMKFHQVLGHPAEQITCNTARMAGVQLS-GIWRPCVHCSESRMRRYAVPKSTENRA-GRAGRLFIYLSGPFHETSLGGNRFVMLCIDDFTRFKMVRILKYKSDATNALRDIINDYFAPEGL--KIGVICTNGGGEWHGQFLSFLCKLGIKREPTPPYTPQYNDVVERALRLLRDKTVALLRGVMEGKS--------DRLWAEAIAYACDMWNRCTSYSLDSGTSPYELWYCRRPTFDNIPPFGTVGYLRRSKPGHKLAPRGASCIMLGLAPDCPRDTFRVRNLTTGQILNRSHIGAS 1335
            V+  GG   PV   GYG + L++             L   HVA  P    +NLLS   L +    T       + +  + GG   F     P  G L      +IK   H A  + +     + A       P D+ ++H   G   E +   TA   GVQL+ G   PC+ CS S  +   V KST  RA  +  R+++ L G     S+GGN + ++  DDF+R+  V  LK+KSDA   L   + DY   +G+  ++ +  T+GGGE+ GQF     + GIK+E TPP+TP+YN V ERAL  L   T A L   ++             LWAEAI+ AC   N   + S +   S YE+++   P   +  PF     L+ S+   K  P+G     +G A + PR    +       ++ R+  GA+
Sbjct:  469 VKGIGGGTAPVLFRGYGDVSLVLQTEDGGVHGPV--LNAAHVAEAP----YNLLSLSSLAEE-GHTYSGMKGGLTLTTKAGGEVWF-----PRTGKLLTQRGYQIKPTLHTACAALIVSGDAKAA------NPTDLNEYHLAHGQARETLLRITAEQQGVQLTDGPLLPCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAMLK-SRRKAKSQPKGEKGWYVGPAHNHPRYCVVMLTEAGTVVITRNSPGAT 880          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66258.14224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE5.220e-4130.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE7.290e-4130.93Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE1.430e-4031.95Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KVR5_9PHAE3.890e-3935.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE3.140e-3830.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE5.640e-3832.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH25_9PHAE6.220e-3831.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE1.340e-3734.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRL9_9PHAE2.680e-3635.81Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JM30_9PHAE1.270e-3230.56Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66258contigH-elongata_contig66258:7..2188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score77.0
Seed ortholog evalue4.6e-12
Seed eggNOG ortholog126957.SMAR002312-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1777
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66258.14224.1prot_H-elongata_contig66258.14224.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66258 7..261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.5215373-CDS-H-elongata_contig66258:6..2611622931051.5215373-CDS-H-elongata_contig66258:6..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66258 7..261 -
1691679678.12335-CDS-H-elongata_contig66258:6..2611691679678.12335-CDS-H-elongata_contig66258:6..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66258 7..261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.533469-UTR-H-elongata_contig66258:261..2941622931051.533469-UTR-H-elongata_contig66258:261..294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66258 262..294 -
1691679678.1325219-UTR-H-elongata_contig66258:261..2941691679678.1325219-UTR-H-elongata_contig66258:261..294Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66258 262..294 -
1622931051.546898-UTR-H-elongata_contig66258:632..8061622931051.546898-UTR-H-elongata_contig66258:632..806Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66258 633..806 -
1691679678.1405048-UTR-H-elongata_contig66258:632..8061691679678.1405048-UTR-H-elongata_contig66258:632..806Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66258 633..806 -
1622931051.5627544-UTR-H-elongata_contig66258:873..21881622931051.5627544-UTR-H-elongata_contig66258:873..2188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66258 874..2188 -
1691679678.1493719-UTR-H-elongata_contig66258:873..21881691679678.1493719-UTR-H-elongata_contig66258:873..2188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66258 874..2188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66258.14224.1

>prot_H-elongata_contig66258.14224.1 ID=prot_H-elongata_contig66258.14224.1|Name=mRNA_H-elongata_contig66258.14224.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MVIAREMDRQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCP
LVAQGFRQVKGIHYEESSSPTSAQASIRMVLSMIA
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mRNA from alignment at H-elongata_contig66258:7..2188-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66258.14224.1 ID=mRNA_H-elongata_contig66258.14224.1|Name=mRNA_H-elongata_contig66258.14224.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2182bp|location=Sequence derived from alignment at H-elongata_contig66258:7..2188- (Himanthalia elongata Himel1 dioecious)
GGGAGCGAATTCTGGGCGAACGAAAGCGGTATAACAAAGCATATGACACA AGACCCGGCGGGTCTAGAGGATTATACGGCGGCACCCGCGGGAGATGGAG TGGAGAGCACCGGCGGTACCCTCCTTCCGGTGGCGGGATATGGACATCTC CGCCTCCTGGTAGACCAAGGCAAAAACAACTTCGCCAACTCGACGCGCCA GCTCACACTAAAGCACGTCGCACATGTGCCGAATCTTGGACAGCATAATC TACTCTCTACGAAACGGCTGACGCAGTTTTTCGACGCGACGATGCGCGTC TACCCAGCGGCTGTATTGATCCGCCCCCGGCGAGGGGGCATGCCACTCTT TTTCTGCCCACTTCGACCAGAAAACGGCCTTTTAGAGATCAAGGTGCGCT GCCACGTCGCTACGAAGAGCGGCCTATCCAAACCCCCAACAGAAACAGCG CTCGCGGCTACGCAGCGCGGCCCGCAGGATATCATGAAGTTCCACCAGGT GCTCGGGCACCCGGCAGAGCAGATCACGTGCAACACGGCCCGTATGGCGG GCGTGCAGTTAAGCGGAATTTGGCGACCATGCGTACACTGCTCTGAATCT AGGATGCGGCGATATGCCGTGCCTAAATCCACGGAGAATCGGGCTGGGCG CGCGGGACGACTGTTTATTTATCTCTCAGGCCCCTTTCACGAGACGTCTC TCGGAGGAAACAGATTCGTCATGCTGTGCATTGACGACTTCACCCGCTTC AAAATGGTCCGTATCCTGAAGTACAAGAGCGACGCCACGAATGCGTTAAG GGATATAATCAACGACTACTTCGCGCCCGAGGGCCTCAAAATCGGCGTTA TCTGCACGAATGGTGGGGGAGAATGGCACGGCCAGTTCCTGTCTTTCCTG TGTAAGCTCGGAATCAAGCGCGAGCCTACACCCCCATATACCCCCCAATA CAATGACGTCGTGGAGCGCGCTCTGAGGCTACTGCGCGACAAGACCGTGG CCCTGCTGCGAGGTGTAATGGAGGGTAAGAGCGACCGTCTATGGGCGGAA GCTATCGCGTACGCATGCGATATGTGGAATCGATGTACCTCCTACTCCCT CGACAGCGGCACCTCGCCATATGAGCTTTGGTACTGCCGACGGCCGACAT TCGACAACATCCCCCCATTCGGGACCGTGGGATATCTACGACGGTCGAAG CCGGGGCACAAACTAGCTCCCCGCGGGGCGAGCTGCATCATGCTTGGGCT GGCCCCCGACTGCCCGCGGGACACTTTCCGGGTGCGTAACCTCACCACAG GCCAGATCCTCAACCGTCAATCCGTCACTTGGCACCCCCCGACCGGGGGG GAGGGGAACACGCCCCTTTCCGTACCATCCAGGATCACACATAGGCGCCT CCCCGTGCGGAGCCCAAACATCACGGGCTATACATCAACATCAAGCACCT TGGAAGTCGTACCAGAAGAACCGGAGGAAGAAACGCCTGAAAGCCAACCG CGAGATGACCTGTCGGAGCGGAGTGAGCCATCCGATGATGCGTCCGAATA AGGTGAGTTGAACGACGACGGACCGGAACGGGGTGATTTTGGATTACGAG CCGGAGGGGGGGGTAGAAGAAAAAGAATCAAGCGGCGCCGCCCAGAAGGT ACAGGCTGCTGTGCGACAACTCTACAACTCATTTACCGGCAAACCGCACC CCTCGTCCCGGAGTCGCACGAGGAGTGGAAAAAGCTTCGTCCAGGACAAC CCAAGCATCGCCCTTTTGGGGGCGGGTTATAGCGACAAGACACTGCCACT TCTGATGCACGCACCCTGCGGTACCCTCGGCGAGGGTGTCCCGACGTGCG GGTCCGTGAGGCAGCTAGACCCAGAGCTGACAACCATGGGCGAGGCGCAA GCGTCGTCGGAGTGACCGCAATGGAAAATGGTGATCGCGCGCGAGATGGA TAGGCAAACTGCTCGGGGCGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGA AGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGCAAAATCGACAAGGAT GGAAGGATCGAGAAGTATAAATGTCCCCTCGTGGCGCAGGGCTTCAGGCA GGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGACCTCTGCGCAGG CCAGCATTAGAATGGTACTCAGCATGATCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig66258:7..2188-

>mRNA_H-elongata_contig66258.14224.1 ID=mRNA_H-elongata_contig66258.14224.1|Name=mRNA_H-elongata_contig66258.14224.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig66258:7..2188- (Himanthalia elongata Himel1 dioecious)
ATGGTGATCGCGCGCGAGATGGATAGGCAAACTGCTCGGGGCGTGTGGCA
GGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGTAGTTT
TCAAGCGCAAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCCC
CTCGTGGCGCAGGGCTTCAGGCAGGTCAAAGGCATACACTACGAGGAATC
CTCCTCTCCGACCTCTGCGCAGGCCAGCATTAGAATGGTACTCAGCATGA
TCGCGATGGTGATCGCGCGCGAGATGGATAGGCAAACTGCTCGGGGCGTG
TGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAGT
AGTTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGAGAAGTATAAAT
GTCCCCTCGTGGCGCAGGGCTTCAGGCAGGTCAAAGGCATACACTACGAG
GAATCCTCCTCTCCGACCTCTGCGCAGGCCAGCATTAGAATGGTACTCAG
CATGATCGCG
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