mRNA_H-elongata_contig66255.14223.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.050e-56 Identity = 91/149 (61.07%), Postives = 114/149 (76.51%), Query Frame = 1
Query: 1 KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIHYVKTDDHLADIGNKSLSKNR 447
K+GGFKL F D+NW NNPDNGKSTSSYL L++AP+ F+ LQ L A STMEAEL A+AL MKEA+F SNM+ ELGFG F +P+Y DNT+TLH GNR++S R KH+ LR+ F++ELV E +ISIHY T+D+LA IG K +K+R
Sbjct: 51 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHR 199
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 187 bits (476), Expect = 5.160e-55 Identity = 92/149 (61.74%), Postives = 115/149 (77.18%), Query Frame = 1
Query: 1 KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIHYVKTDDHLADIGNKSLSKNR 447
K+GGFKL F D+NW NNPDNGKSTSSYL L++AP+ F+ LQ L A STMEAEL A+AL MKEA+F SNM+ ELGFG F +P+Y DNT+TLH GNR++S R KH+ LR+ F++ELV E +ISIHY T+D+LADIG K +K+R
Sbjct: 276 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHR 424
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 186 bits (473), Expect = 6.040e-53 Identity = 92/149 (61.74%), Postives = 115/149 (77.18%), Query Frame = 1
Query: 1 KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIHYVKTDDHLADIGNKSLSKNR 447
K+GGFKL F D+NW NNPDNGKSTSSYL L++AP+ F+ LQ L A STMEAEL A+AL MKEA+F SNM+ ELG G F +P+Y DNT+TLH GNR++S R KH+ LR+ F++ELV E +ISIHYV T+D+LADIG K +K+R
Sbjct: 497 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHR 645
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 189 bits (480), Expect = 7.570e-53 Identity = 92/149 (61.74%), Postives = 116/149 (77.85%), Query Frame = 1
Query: 1 KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIHYVKTDDHLADIGNKSLSKNR 447
K+GGFKL F D+NW NNPDNGKSTSSYL L++AP+ F+ LQ L A STMEAEL A+AL M EA+F+SNM+ ELGFG F +P+Y DNT+TLH GNR++S R KH+ LR+ F++ELV E +ISIHYV T+D+LADIG K +K+R
Sbjct: 1505 KKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHR 1653
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 189 bits (479), Expect = 8.510e-53 Identity = 92/149 (61.74%), Postives = 116/149 (77.85%), Query Frame = 1
Query: 1 KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIHYVKTDDHLADIGNKSLSKNR 447
K+GGFKL F D+NW NNPDNGKSTSSYL L++AP+ F+ LQ L A STMEAEL A+AL MKEA+F SNM+ ELGFG F +P+Y DNT+TLH GNR++S R KH+ LR+ F++ELV E +ISIHYV+T+D+LADIG K + +R
Sbjct: 836 KKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHR 984
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 185 bits (470), Expect = 1.420e-51 Identity = 91/149 (61.07%), Postives = 117/149 (78.52%), Query Frame = 1
Query: 1 KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIHYVKTDDHLADIGNKSLSKNR 447
K+GGF LT DANWGNNPDN KS SSY++ +S AP+ FK LQ+L A ST+EAEL AAAL MKE +F +NM+KELGFG F + PLY+ NT+TLHV GN+T+S R KHV LR+ +++E+V+E +ISIHY+ T+D+LADIG K L+K R
Sbjct: 530 KRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQR 677
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 182 bits (463), Expect = 3.830e-51 Identity = 92/149 (61.74%), Postives = 112/149 (75.17%), Query Frame = 1
Query: 1 KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIHYVKTDDHLADIGNKSLSKNR 447
K+GGFKLT F D+NWGNNPDNGKSTSS+L L AP+ FK LQ+L QSTME EL AAAL +KEA+F SN++ ELGFG VPLY DNT+TLH GNR+YS KH+ LR+ F++ELV E +I+IHYV D + ADIG K L+K+R
Sbjct: 559 KRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDR 707
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 172 bits (435), Expect = 8.420e-47 Identity = 83/146 (56.85%), Postives = 108/146 (73.97%), Query Frame = 1
Query: 10 GFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIHYVKTDDHLADIGNKSLSKNR 447
G KL F ++NW NNPDNGKS+S YL L +AP+ FK +Q A STMEAEL A+AL MKEA+F SN++ ELG G F VPLY DNT+TLH GNR++S R KH+ LR+ +++EL+ E +ISIHY+ TD ++ADIG K L+K+R
Sbjct: 1009 GSKLATFSESNWANNPDNGKSSSCYLTMLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHR 1154
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.570e-46 Identity = 88/147 (59.86%), Postives = 104/147 (70.75%), Query Frame = 1
Query: 1 KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIHYVKTDDHLADIGNKSLSK 441
K GFKL F D NW NNPDNGKSTS Y L AP+ K +Q A STMEAEL A+AL MKEA+F SNM+ ELGFG F VPLY DNT+TLH GNR++S R H+ LR+ +++ELV E +ISIHYV TD +LADIG K L+K
Sbjct: 1034 KSEGFKLGTFSDTNWANNPDNGKSTSCYWTMLEHAPVSLKSGIQGPAAISTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNK 1180
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.060e-44 Identity = 80/129 (62.02%), Postives = 99/129 (76.74%), Query Frame = 1
Query: 1 KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSTMEAELAAAALIMKEALFYSNMIKELGFGMRFNTVPLYLDNTSTLHVAGNRTYSPRVKHVVLRYCFVQELVRESQISIH 387
K+GGFKLT F DANW +NPDN +STSSY++ +S AP+ FK LQ L STMEAEL AAAL MKEA+F SNM+ ELGFG +F VPLY++NT+TLHV GN+ YS R KH+ L + V+ELV+E I+IH
Sbjct: 372 KRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66255.14223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig66255.14223.1 >prot_H-elongata_contig66255.14223.1 ID=prot_H-elongata_contig66255.14223.1|Name=mRNA_H-elongata_contig66255.14223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp KQGGFKLTKFLDANWGNNPDNGKSTSSYLVFLSSAPIIFKVHLQALMAQSback to top mRNA from alignment at H-elongata_contig66255:414..860- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig66255.14223.1 ID=mRNA_H-elongata_contig66255.14223.1|Name=mRNA_H-elongata_contig66255.14223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig66255:414..860- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig66255:414..860- >mRNA_H-elongata_contig66255.14223.1 ID=mRNA_H-elongata_contig66255.14223.1|Name=mRNA_H-elongata_contig66255.14223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig66255:414..860- (Himanthalia elongata Himel1 dioecious)back to top |