mRNA_H-elongata_contig66238.14221.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66238.14221.1
Unique NamemRNA_H-elongata_contig66238.14221.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: A0A6H5KZD5_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZD5_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.580e-37
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREE 264
            LD+FVL+QLSGID+TF ELTERLGDPDVL NPKL+MEVSQERASVEE+V CY  YTKA EDLE AKE F ESSG+GGD +MKEMAREE
Sbjct:   72 LDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREE 159
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BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: A0A4D9DHG8_9STRA (RF_PROK_I domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHG8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.650e-16
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREE 264
            LD FV  +L    +T+KELTERLGDPDV+ NP  LM+V+QER ++EEVV  Y  + K   D+  AK+ F E++G   D +MKEMAR E
Sbjct:    3 LDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNEAAG---DPEMKEMARAE 87
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BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: A0A7S0UJX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UJX6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.760e-16
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREEASE 273
            LDE ++ +L  I +++  LTERLGDPDVL N KLL +V  +RAS EEVV  Y  YT   E+LE AKE F ++   G D +MKEMAR E  E
Sbjct:   15 LDEGMMGRLENIKRSYNALTERLGDPDVLENTKLLQKVMSDRASSEEVVIAYDEYTGLLEELEEAKELFQDA---GDDPEMKEMARAEMKE 102
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BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: A0A140ECK3_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Monodopsis sp. MarTras21 TaxID=1745953 RepID=A0A140ECK3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.000e-16
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREE 264
            LD FV  +L  I +T+ ELTERLGDPDV+ NP  LM+V+QER  +EEVV  Y  + K  ED+  AK+ F E+   G D ++KEMAR E
Sbjct:   48 LDPFVQSKLDSIKRTYHELTERLGDPDVIANPNSLMQVNQERMKIEEVVLSYQKWQKLGEDMVGAKQLFNEA---GNDVELKEMARAE 132
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BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: A0A448Z911_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z911_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.020e-15
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREEASE 273
            LDE ++ +L  I +++  LTERLGDPDVLG+ KLL +V  +RAS EEVV  Y  YT   E+LE AKE F ++   G D +MKEMAR E  E
Sbjct:   44 LDEGMMGRLENIKRSYNALTERLGDPDVLGDSKLLQKVMSDRASSEEVVLAYDEYTGLLEELEGAKELFQDA---GDDPEMKEMARAEMKE 131
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BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: A0A836CKN4_9STRA (Peptide chain release factor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.610e-15
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREE 264
            LD+FV+ QL GI++++ E+TERLGDPDVL + K LME+S++RA +E VV  +  Y  A   L  A E F ES+G   D +++EMAREE
Sbjct:    3 LDDFVVRQLGGIERSYNEMTERLGDPDVLADSKKLMEISKDRAKMEGVVTMFGEYKDALAQLGGATEMFQESAG---DAELREMAREE 87
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BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: A0A7S2W3G7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3G7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.960e-15
Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:    1 LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREE 264
            ++EF++++L  I++TF ELTERLGDPDV+ +PKL+M ++QER+S+EE V+ Y+ +     +L  AKE    S     D +MKEMA+EE
Sbjct:   41 MNEFMVERLQSIERTFNELTERLGDPDVISDPKLMMSLTQERSSIEETVETYSQWRDMQTELGDAKELVDVSD----DAEMKEMAKEE 124
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BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: A0A140ECJ9_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Vischeria sp. CAUP Q 202 TaxID=1805947 RepID=A0A140ECJ9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 6.770e-15
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREE 264
            L+ FV  +L GI++++KELTERLGDPDV+ +P+ LM V+QER+ +E VV  Y  Y K  EDL  AK+ F E+     D +++EMAR+E
Sbjct:   39 LEPFVKTKLDGIERSYKELTERLGDPDVIKSPQTLMHVNQERSKIEGVVVAYQQYKKNDEDLLGAKQLFNEAGQE--DPELREMARDE 124
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BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: A0A7S4F4Q1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F4Q1_CHRCT)

HSP 1 Score: 77.8 bits (190), Expect = 1.030e-14
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREE 264
            +D FVLD+L  + +TF+ LTERL DP++L + + ++ V++ERA +EE V  Y  Y    E L  A+E F E+   GGDT+MKEMAREE
Sbjct:   80 IDRFVLDRLKLVTETFQSLTERLEDPELLSDTQEMLRVTKERAKLEETVMAYKQYLALEEQLNGARELFNEA---GGDTEMKEMAREE 164
[Close]
BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Match: K9XZS4_STAC7 (Peptide chain release factor 1 n=2 Tax=Stanieria TaxID=102115 RepID=K9XZS4_STAC7)

HSP 1 Score: 76.6 bits (187), Expect = 2.140e-14
Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   10 FVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQCYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMA 255
            ++L++L  ++QT++ELT RLGDPD+  NP  L ++++ R+S+EE V  Y  + KATE+L  AKE F E+   GGD++M+EMA
Sbjct:    5 YLLEKLKSVEQTYQELTRRLGDPDIATNPDELQKIAKIRSSLEETVNTYEEWKKATEELAGAKEIFKEA---GGDSEMREMA 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66238.14221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZD5_9PHAE4.580e-3780.68RF_PROK_I domain-containing protein n=2 Tax=Ectoca... [more]
A0A4D9DHG8_9STRA1.650e-1652.27RF_PROK_I domain-containing protein n=3 Tax=Monodo... [more]
A0A7S0UJX6_9STRA2.760e-1652.75Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A140ECK3_9STRA4.000e-1652.27Plastid peptide chain release factor 1 n=1 Tax=Mon... [more]
A0A448Z911_9STRA1.020e-1552.75RF_PROK_I domain-containing protein n=1 Tax=Pseudo... [more]
A0A836CKN4_9STRA1.610e-1551.14Peptide chain release factor 1 n=1 Tax=Tribonema m... [more]
A0A7S2W3G7_9STRA4.960e-1547.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A140ECJ9_9STRA6.770e-1550.00Plastid peptide chain release factor 1 n=1 Tax=Vis... [more]
A0A7S4F4Q1_CHRCT1.030e-1448.86Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
K9XZS4_STAC72.140e-1447.56Peptide chain release factor 1 n=2 Tax=Stanieria T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66238contigH-elongata_contig66238:2613..3086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.7e-31
Seed eggNOG ortholog2880.D7FY16
Preferred nameMRF1
KEGG koko:K02835
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009658,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016149,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032543,GO:0032544,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0061024,GO:0070126,GO:0071704,GO:0071840,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.translation release factor activity
EggNOG OGsCOG0216@1,KOG2726@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpeptide chain release factor 1
Ec32 orthologEc-08_004700.1
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.3398378-CDS-H-elongata_contig66238:2612..27531622931051.3398378-CDS-H-elongata_contig66238:2612..2753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66238 2613..2753 +
1691679678.0632784-CDS-H-elongata_contig66238:2612..27531691679678.0632784-CDS-H-elongata_contig66238:2612..2753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66238 2613..2753 +
1622931051.359037-CDS-H-elongata_contig66238:2939..30861622931051.359037-CDS-H-elongata_contig66238:2939..3086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66238 2940..3086 +
1691679678.0758038-CDS-H-elongata_contig66238:2939..30861691679678.0758038-CDS-H-elongata_contig66238:2939..3086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66238 2940..3086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66238.14221.1prot_H-elongata_contig66238.14221.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66238 2613..3086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66238.14221.1

>prot_H-elongata_contig66238.14221.1 ID=prot_H-elongata_contig66238.14221.1|Name=mRNA_H-elongata_contig66238.14221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
LDEFVLDQLSGIDQTFKELTERLGDPDVLGNPKLLMEVSQERASVEEVVQ
CYTAYTKATEDLELAKEFFAESSGSGGDTDMKEMAREEASEKYKR*
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mRNA from alignment at H-elongata_contig66238:2613..3086+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66238.14221.1 ID=mRNA_H-elongata_contig66238.14221.1|Name=mRNA_H-elongata_contig66238.14221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig66238:2613..3086+ (Himanthalia elongata Himel1 dioecious)
CTTGATGAGTTCGTCCTGGATCAACTCTCAGGTATTGATCAAACATTCAA
AGAGCTGACAGAGCGCCTGGGCGACCCAGATGTTCTTGGAAATCCAAAAC
TCCTGATGGAGGTGTCTCAAGAGCGGGCGAGTGTCGAAGAGGTGAGGGCG
TGAAGCACAACACAAACACACAACACATCGCCCATTTCGGAAACTGTTAC
CAACGCCTGATGCGAAACATACACACACGCCATCACAAGCGCTTCAGCAC
AAAATGGTTAAAGCGAGAGGGTAAAAATATATAAAGGGCTCGCCCCCCAT
TGCGCGGTGGGGCCCATCTATCAATAGGTGGTGCAGTGTTACACCGCCTA
CACGAAGGCTACTGAGGACCTGGAGCTGGCCAAGGAGTTCTTCGCCGAGT
CTTCGGGGTCGGGAGGGGACACGGATATGAAGGAAATGGCAAGGGAAGAG
GCAAGTGAAAAATATAAAAGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig66238:2613..3086+

>mRNA_H-elongata_contig66238.14221.1 ID=mRNA_H-elongata_contig66238.14221.1|Name=mRNA_H-elongata_contig66238.14221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig66238:2613..3086+ (Himanthalia elongata Himel1 dioecious)
CTTGATGAGTTCGTCCTGGATCAACTCTCAGGTATTGATCAAACATTCAA
AGAGCTGACAGAGCGCCTGGGCGACCCAGATGTTCTTGGAAATCCAAAAC
TCCTGATGGAGGTGTCTCAAGAGCGGGCGAGTGTCGAAGAGCTTGATGAG
TTCGTCCTGGATCAACTCTCAGGTATTGATCAAACATTCAAAGAGCTGAC
AGAGCGCCTGGGCGACCCAGATGTTCTTGGAAATCCAAAACTCCTGATGG
AGGTGTCTCAAGAGCGGGCGAGTGTCGAAGAGGTGGTGCAGTGTTACACC
GCCTACACGAAGGCTACTGAGGACCTGGAGCTGGCCAAGGAGTTCTTCGC
CGAGTCTTCGGGGTCGGGAGGGGACACGGATATGAAGGAAATGGCAAGGG
AAGAGGCAAGTGAAAAATATAAAAGATAAGTGGTGCAGTGTTACACCGCC
TACACGAAGGCTACTGAGGACCTGGAGCTGGCCAAGGAGTTCTTCGCCGA
GTCTTCGGGGTCGGGAGGGGACACGGATATGAAGGAAATGGCAAGGGAAG
AGGCAAGTGAAAAATATAAAAGATAA
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