mRNA_H-elongata_contig118445.1421.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118445.1421.1
Unique NamemRNA_H-elongata_contig118445.1421.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118445.1421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118445contigH-elongata_contig118445:51..705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size655
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118445.1421.1prot_H-elongata_contig118445.1421.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118445 185..526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.907967-UTR-H-elongata_contig118445:50..1841622929691.907967-UTR-H-elongata_contig118445:50..184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118445 51..184 +
1691679120.7779727-UTR-H-elongata_contig118445:50..1841691679120.7779727-UTR-H-elongata_contig118445:50..184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118445 51..184 +
1622929691.9358814-UTR-H-elongata_contig118445:526..7051622929691.9358814-UTR-H-elongata_contig118445:526..705Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118445 527..705 +
1691679120.795046-UTR-H-elongata_contig118445:526..7051691679120.795046-UTR-H-elongata_contig118445:526..705Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118445 527..705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.9190917-CDS-H-elongata_contig118445:184..5261622929691.9190917-CDS-H-elongata_contig118445:184..526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118445 185..526 +
1691679120.7859817-CDS-H-elongata_contig118445:184..5261691679120.7859817-CDS-H-elongata_contig118445:184..526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118445 185..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118445.1421.1

>prot_H-elongata_contig118445.1421.1 ID=prot_H-elongata_contig118445.1421.1|Name=mRNA_H-elongata_contig118445.1421.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MIFITTPKNYESHKTISLVTCTSILDLRGNVDNVNILMPSPVTFSLSLHG
CRCARHPTTRLVVNASISCKIMYNKIKQGRFLLHTRKSINVQVHPCLPFH
NRAVLLLECSQPL*
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mRNA from alignment at H-elongata_contig118445:51..705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118445.1421.1 ID=mRNA_H-elongata_contig118445.1421.1|Name=mRNA_H-elongata_contig118445.1421.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=655bp|location=Sequence derived from alignment at H-elongata_contig118445:51..705+ (Himanthalia elongata Himel1 dioecious)
GCCGAACCCGTCTTGCGAGACCAAATTATCAGGCGCGAACAGAGACAAGA
AAAAATATTTTCCATGTTCAGCTGACTACGAGCAGAAGACAACCAAATCC
GGTCGATCTTACTCTGCTGAAAGTGTGACCATACATGATATTTATAACAA
CCCCAAAAAATTACGAATCGCACAAAACCATCTCTCTGGTCACATGTACA
TCAATCCTTGATCTACGAGGAAATGTTGACAACGTCAACATTCTCATGCC
ATCTCCAGTGACATTCTCATTGTCCCTACATGGATGTCGGTGTGCTAGGC
ATCCTACTACCCGTCTCGTCGTGAACGCCTCTATCTCTTGTAAAATAATG
TATAATAAAATAAAACAAGGGCGATTCTTACTCCACACTCGAAAATCCAT
CAATGTACAGGTTCACCCCTGCTTACCCTTTCATAACCGCGCCGTACTTT
TACTAGAGTGTTCGCAACCTCTTTAGGCTGACCATATGTAGATTCCTAGA
ACGTGCTCGGATAGGAATTTTCTGTTCTTCATTCGTTAGGGCGGGTATTA
ACGGGGTTACAAAAAAATAAATTCCAGATGATTTAAATTTAAATAGGGCT
CTGATTGATCGAAAGGTAAATAACGCCTAGCCTTTGACTAATCAGAGCCC
GATTT
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Coding sequence (CDS) from alignment at H-elongata_contig118445:51..705+

>mRNA_H-elongata_contig118445.1421.1 ID=mRNA_H-elongata_contig118445.1421.1|Name=mRNA_H-elongata_contig118445.1421.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig118445:51..705+ (Himanthalia elongata Himel1 dioecious)
ATGATATTTATAACAACCCCAAAAAATTACGAATCGCACAAAACCATCTC
TCTGGTCACATGTACATCAATCCTTGATCTACGAGGAAATGTTGACAACG
TCAACATTCTCATGCCATCTCCAGTGACATTCTCATTGTCCCTACATGGA
TGTCGGTGTGCTAGGCATCCTACTACCCGTCTCGTCGTGAACGCCTCTAT
CTCTTGTAAAATAATGTATAATAAAATAAAACAAGGGCGATTCTTACTCC
ACACTCGAAAATCCATCAATGTACAGGTTCACCCCTGCTTACCCTTTCAT
AACCGCGCCGTACTTTTACTAGAGTGTTCGCAACCTCTTTAGATGATATT
TATAACAACCCCAAAAAATTACGAATCGCACAAAACCATCTCTCTGGTCA
CATGTACATCAATCCTTGATCTACGAGGAAATGTTGACAACGTCAACATT
CTCATGCCATCTCCAGTGACATTCTCATTGTCCCTACATGGATGTCGGTG
TGCTAGGCATCCTACTACCCGTCTCGTCGTGAACGCCTCTATCTCTTGTA
AAATAATGTATAATAAAATAAAACAAGGGCGATTCTTACTCCACACTCGA
AAATCCATCAATGTACAGGTTCACCCCTGCTTACCCTTTCATAACCGCGC
CGTACTTTTACTAGAGTGTTCGCAACCTCTTTAG
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