mRNA_H-elongata_contig66236.14220.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66236.14220.1
Unique NamemRNA_H-elongata_contig66236.14220.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.510e-55
Identity = 94/121 (77.69%), Postives = 102/121 (84.30%), Query Frame = 1 
Query:    1 EPDPWLSGTAPPYRTALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 363
            +PDPWL+GTAP   TAL MS D+ARLDR+SFGC +LDAAF GGV VQG+TE  GEAGAGKTQ+CLQLLLQAQL P AGGLGGKSYVLTCGEG FPSRRLRQMA   Q RH VKPE LM+GV
Sbjct:   48 KPDPWLAGTAPECTTALAMSKDAARLDRLSFGCPSLDAAFEGGVRVQGVTEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQSRHGVKPEKLMEGV 168
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.770e-53
Identity = 93/121 (76.86%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:    1 EPDPWLSGTAPPYRTALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 363
            +PDPWL+GTAP   TAL M  ++ARLDR+SFGC +LDAAF GGV VQGITE  GEAGAGKTQ+CLQLLLQAQL P AGGLGGKSYVLTCGEG FPSRRLRQMA   Q RH VKPE LM+GV
Sbjct:   48 KPDPWLAGTAPECTTALAMLKNAARLDRLSFGCPSLDAAFEGGVRVQGITEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQSRHGVKPEKLMEGV 168
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A835YUX7_9STRA (RECA_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.540e-17
Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   67 SARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGK 249
            S R  R+SFGCAALDA   GG+P+ G+TE  GEAG GKTQ CLQLLLQA LP   GG+GG+
Sbjct:    3 SERRGRLSFGCAALDANLGGGLPLHGLTELVGEAGTGKTQFCLQLLLQAVLPVEHGGVGGR 63
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A3Q3NDU9_9LABR (DNA repair protein n=2 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3NDU9_9LABR)

HSP 1 Score: 82.8 bits (203), Expect = 2.310e-16
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:   43 TALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 363
            TAL +  D + L R+S GCA LD    GG+PV G+TE +GE+GAGKTQ+ LQL L  Q P   GGL   + V  C E  FPSRRL+Q+   Q       PE+L++ +
Sbjct:   62 TALLLHDDPSSL-RLSVGCAVLDELLRGGLPVGGVTELSGESGAGKTQLALQLCLSVQYPVQQGGLDSGA-VFICTEDSFPSRRLQQLIREQSSLRSDVPESLINSI 166
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A3Q3F241_9LABR (DNA repair protein XRCC3-like n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3F241_9LABR)

HSP 1 Score: 82.8 bits (203), Expect = 2.430e-16
Identity = 50/107 (46.73%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:   43 TALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 363
            TAL +  D + L R+S GCA LD    GG+PV G+TE +GE+GAGKTQ+ LQL L  Q P   GGL   + V  C E  FPSRRL+Q+   Q       PE+L++ +
Sbjct:   62 TALLLHDDPSSL-RLSVGCAVLDELLRGGLPVGGVTELSGESGAGKTQLALQLCLSVQYPVQQGGLDSGA-VFICTEDSFPSRRLQQLIREQSSLRSDVPESLINSI 166
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A2K3M868_TRIPR (DNA repair protein XRCC3 (Fragment) n=3 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M868_TRIPR)

HSP 1 Score: 77.4 bits (189), Expect = 2.820e-16
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   79 DRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKS-YVLTCGEGKFPSRRLR 300
            ++ + GC  LD   +GG+P + ITE  GE+G+GKTQICLQL+L AQLPP  GGL G S Y+ T  E  FP RRL+
Sbjct:   17 EKCTVGCPILDRNLNGGIPTKSITEVVGESGSGKTQICLQLVLSAQLPPSHGGLNGSSLYIYT--EYPFPIRRLK 89
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A8C4CM17_9TELE (DNA repair protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4CM17_9TELE)

HSP 1 Score: 81.6 bits (200), Expect = 8.140e-16
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:   28 APPYRTALEMSIDSARLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLG-GKSYVLTCGEGKFPSRRLRQMACRQQKRHQVKPENLMDGV 363
            A P RTAL++  +S   +++S  C  LDA  HGG+P+ GITE +GE+GAGKTQ+ LQL L  Q P   GGLG G  Y+  C E  FP +RLRQ+  +Q +     P+ L+  +
Sbjct:   60 AAPVRTALDVR-NSEPGEKLSLACPLLDALLHGGLPLCGITELSGESGAGKTQLGLQLCLSVQYPAEWGGLGSGAVYI--CTEDAFPIKRLRQLITQQPRLRPDIPQALVHSI 169
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A6J5UTB8_PRUAR (RECA_2 domain-containing protein n=6 Tax=Prunus TaxID=3754 RepID=A0A6J5UTB8_PRUAR)

HSP 1 Score: 80.1 bits (196), Expect = 1.560e-15
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:   82 RISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKS-YVLTCGEGKFPSRRLRQMACRQQKRH 330
            ++S GC  LD    GG+P   ITE  GE+ +GKTQ+CLQL ++AQLPP  GGLGG S Y+ T  E  FP RRL+Q+A   Q  H
Sbjct:   15 KLSIGCPILDGCLGGGIPCNSITELVGESSSGKTQVCLQLAVRAQLPPSHGGLGGSSLYIHT--EFSFPLRRLQQLANHYQASH 96
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A8B8L337_ABRPR (DNA repair protein XRCC3 homolog n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8L337_ABRPR)

HSP 1 Score: 79.7 bits (195), Expect = 1.890e-15
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   73 RLDRISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKS-YVLTCGEGKFPSRRLRQMA 309
            R ++ S GC  LD    GGVP   +TE  GE+G+GKTQ+CLQL+L AQLPP  GGL   S Y+ T  E  FP RRLRQ++
Sbjct:   12 RTEKCSVGCPVLDRCLGGGVPCNSVTELVGESGSGKTQLCLQLVLSAQLPPSGGGLSASSIYIHT--EFPFPFRRLRQLS 89
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BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Match: A0A2G8LRK6_STIJA (Putative DNA repair protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LRK6_STIJA)

HSP 1 Score: 79.0 bits (193), Expect = 7.370e-15
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   85 ISFGCAALDAAFHGGVPVQGITEATGEAGAGKTQICLQLLLQAQLPPGAGGL-GGKSYVLTCGEGKFPSRRLRQM 306
            +S GC  LD  F GG+  QGITE TGE+ AGKTQ+CLQL L AQLP   GGL GG  YV  C E  FPS+RL+Q+
Sbjct:  108 LSLGCPILDEIFRGGILSQGITEVTGESAAGKTQLCLQLCLMAQLPLEDGGLNGGAVYV--CTEDVFPSKRLQQL 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66236.14220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE7_ECTSI1.510e-5577.69RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KY82_9PHAE4.770e-5376.86RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YUX7_9STRA3.540e-1765.57RECA_2 domain-containing protein n=1 Tax=Tribonema... [more]
A0A3Q3NDU9_9LABR2.310e-1646.73DNA repair protein n=2 Tax=Labrus bergylta TaxID=5... [more]
A0A3Q3F241_9LABR2.430e-1646.73DNA repair protein XRCC3-like n=1 Tax=Labrus bergy... [more]
A0A2K3M868_TRIPR2.820e-1654.67DNA repair protein XRCC3 (Fragment) n=3 Tax=Trifol... [more]
A0A8C4CM17_9TELE8.140e-1645.13DNA repair protein n=1 Tax=Denticeps clupeoides Ta... [more]
A0A6J5UTB8_PRUAR1.560e-1552.38RECA_2 domain-containing protein n=6 Tax=Prunus Ta... [more]
A0A8B8L337_ABRPR1.890e-1553.75DNA repair protein XRCC3 homolog n=1 Tax=Abrus pre... [more]
A0A2G8LRK6_STIJA7.370e-1560.00Putative DNA repair protein n=1 Tax=Stichopus japo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66236contigH-elongata_contig66236:2..1379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue4.5e-45
Seed eggNOG ortholog2880.D8LGE7
Preferred nameXRCC3
KEGG koko:K10880
KEGG Pathwayko03440,map03440
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0042148,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0065003,GO:0065004,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.meiotic DNA recombinase assembly
EggNOG OGsCOG0468@1,KOG1564@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA recombination and repair protein Rad51, C-terminal
Ec32 orthologEc-16_003770.1
Exons4
Model size363
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66236.14220.1prot_H-elongata_contig66236.14220.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66236 2..1379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.2447317-CDS-H-elongata_contig66236:1..431622931051.2447317-CDS-H-elongata_contig66236:1..43Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66236 2..43 -
1691679678.0024672-CDS-H-elongata_contig66236:1..431691679678.0024672-CDS-H-elongata_contig66236:1..43Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66236 2..43 -
1622931051.2655718-CDS-H-elongata_contig66236:412..5231622931051.2655718-CDS-H-elongata_contig66236:412..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66236 413..523 -
1691679678.0190635-CDS-H-elongata_contig66236:412..5231691679678.0190635-CDS-H-elongata_contig66236:412..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66236 413..523 -
1622931051.2857916-CDS-H-elongata_contig66236:845..8981622931051.2857916-CDS-H-elongata_contig66236:845..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66236 846..898 -
1691679678.037677-CDS-H-elongata_contig66236:845..8981691679678.037677-CDS-H-elongata_contig66236:845..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66236 846..898 -
1622931051.3023434-CDS-H-elongata_contig66236:1222..13791622931051.3023434-CDS-H-elongata_contig66236:1222..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66236 1223..1379 -
1691679678.048198-CDS-H-elongata_contig66236:1222..13791691679678.048198-CDS-H-elongata_contig66236:1222..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66236 1223..1379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66236.14220.1

>prot_H-elongata_contig66236.14220.1 ID=prot_H-elongata_contig66236.14220.1|Name=mRNA_H-elongata_contig66236.14220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
EPDPWLSGTAPPYRTALEMSIDSARLDRISFGCAALDAAFHGGVPVQGIT
EATGEAGAGKTQICLQLLLQAQLPPGAGGLGGKSYVLTCGEGKFPSRRLR
QMACRQQKRHQVKPENLMDGV
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mRNA from alignment at H-elongata_contig66236:2..1379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66236.14220.1 ID=mRNA_H-elongata_contig66236.14220.1|Name=mRNA_H-elongata_contig66236.14220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1378bp|location=Sequence derived from alignment at H-elongata_contig66236:2..1379- (Himanthalia elongata Himel1 dioecious)
GAGCCCGATCCGTGGCTGTCCGGCACCGCTCCGCCGTACAGGACGGCGCT
GGAAATGTCGATAGACAGCGCGCGACTGGACAGGATTTCGTTCGGGTGCG
CGGCCCTCGACGCGGCGTTCCACGGCGGCGTTCCCGTTCAAGGCATCACC
GAGGCGAGTGCCAATGCTATAGCCCACATCCTATCTTTCTTTTTTCTATA
TTTCTGTATTTTACTCCCGCTTTCTTTCTCTTGCTTTTTGTTGCCAAGGC
GACAAGCAAAACACGTCCGCAGCTTCCCTGGCGATACACTTTCTCTCGCC
CCCTCGAAGGCGGCGCTGGACTATTTATTTTTACCCCACTACCCATCCTC
GCCTTCCCGCTCGCGATACGCCGCTGCCCTGTTAGAAATAACTCTGGGCC
GTATAATTGGGCCTGCCTCTGCCTGTCTGGTCGCGTGCGCAATCGCCAAC
GTTTCCTTTAATTTGTTTACAAAGCAGATAGCTGGGGAGGCGGGAGCCGG
GAAAACTCAGATATGCCTTCAGCTCCTGCTTCAGGTAGATGCGAGCACCC
TCGACGTCACAGTGGCGAGCCTCTTGTTTGTTATTTTTTGGAGGGGGGGG
GGGATAATCTTAATGTTCCATCGTCCATCGTCCCTATTTCTTGCTACGTG
AGGGTCGTCTCTCATCGCATGAATGCTTACGGCCGTGTGTAAATAGTGGT
ACGAAGAACGAGAAGAACTGGGATGGGAGATGACGGGGAGGGGGGGAGGG
GGCGAAGGGTTGTGCTCAGGACCCTCGAGGAAGGTCTTACGTCTCGAGGG
CGCCTCTCGTCGCAACCGCGCTTGAATCCAATCATACTATTGGTTGTTTA
TTTCAGGCACAGCTTCCGCCAGGAGCTGGAGGACTCGGCGGGAAGTCCTA
CGTGCTCACGTGTGGCGAGGGGAAGTTTCCGAGCCGAAGACTGAGGCAGA
TGGCGTGCCGACAGCAGGTGGAGAACCGGTAGCGTCGAGGCGCAGCGCAG
CGCGGCGCGGTACGGCGCAATCTGTGGTATATATGCCGTCCTTGGCCGTT
TTTTTACGAGACGTCCCATGATGCTATGGCATGGAACCCGCTCTGTGTCC
AGGGGAGAAGGAACTATTTTATCCCACTCCTTACCGCCGTGGGGCTGCCC
ACGCTGCGCCACGCGATGCACCTCGGACCTCGTGTCAAAATCACTTGCGA
GTCCGACCATGCGTGGTTGATCGGAATATCCACTGTCGGCTGGGAGACGT
CCGTCGTTCGACCTGAAATACCCCTTCGACCTTCCCTTGGATTATATATA
TTTTTGTCTATGCTTATGTGTTACTTGTGTCGACAGAAGCGCCATCAAGT
TAAACCCGAGAACCTGATGGATGGGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig66236:2..1379-

>mRNA_H-elongata_contig66236.14220.1 ID=mRNA_H-elongata_contig66236.14220.1|Name=mRNA_H-elongata_contig66236.14220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig66236:2..1379- (Himanthalia elongata Himel1 dioecious)
GAGCCCGATCCGTGGCTGTCCGGCACCGCTCCGCCGTACAGGACGGCGCT
GGAAATGTCGATAGACAGCGCGCGACTGGACAGGATTTCGTTCGGGTGCG
CGGCCCTCGACGCGGCGTTCCACGGCGGCGTTCCCGTTCAAGGCATCACC
GAGGCGAGAGCCCGATCCGTGGCTGTCCGGCACCGCTCCGCCGTACAGGA
CGGCGCTGGAAATGTCGATAGACAGCGCGCGACTGGACAGGATTTCGTTC
GGGTGCGCGGCCCTCGACGCGGCGTTCCACGGCGGCGTTCCCGTTCAAGG
CATCACCGAGGCGACTGGGGAGGCGGGAGCCGGGAAAACTCAGATATGCC
TTCAGCTCCTGCTTCAGCTGGGGAGGCGGGAGCCGGGAAAACTCAGATAT
GCCTTCAGCTCCTGCTTCAGGCACAGCTTCCGCCAGGAGCTGGAGGACTC
GGCGGGAAGTCCTACGTGCTCACGTGTGGCGAGGGGAAGTTTCCGAGCCG
AAGACTGAGGCAGATGGCGTGCCGACAGCAGGCACAGCTTCCGCCAGGAG
CTGGAGGACTCGGCGGGAAGTCCTACGTGCTCACGTGTGGCGAGGGGAAG
TTTCCGAGCCGAAGACTGAGGCAGATGGCGTGCCGACAGCAGAAGCGCCA
TCAAGTTAAACCCGAGAACCTGATGGATGGGGTGAAGCGCCATCAAGTTA
AACCCGAGAACCTGATGGATGGGGTG
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