mRNA_H-elongata_contig66223.14218.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66223.14218.1
Unique NamemRNA_H-elongata_contig66223.14218.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: A0A835Z5G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G8_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.230e-47
Identity = 77/141 (54.61%), Postives = 99/141 (70.21%), Query Frame = 1
Query:   22 QNPAFTRVFPCAVREGVKEMILKPHVFHSRPEFLMIWGVYAVTYVAANMIITTCERAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADVTA 444
            QN +       ++R G+KE++++PHVF  RPEFLMI+GVY+ TY  AN + TTCE  +VD  WP+F+ TSAVN+ SC+AKD  FTRMF +  P  +P STY LFT RD  TV ASFN+P P S++LQ + GMSK  AD TA
Sbjct:   64 QNASGVMQMGDSIRAGIKELVMRPHVFLRRPEFLMIFGVYSATYTTANAVNTTCEHRKVDSAWPRFLSTSAVNMTSCIAKDRAFTRMFGSSAPMALPLSTYALFTIRDAGTVGASFNLPGPVSEWLQAQ-GMSKARADFTA 203          
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: A0A0L0HLK1_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HLK1_SPIPD)

HSP 1 Score: 117 bits (292), Expect = 3.280e-29
Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 LITTLFPQNPAFTRVFPCAVREGVKEMILKPHVFHSRPEFLMIWGVYAVTYVAANMIITTCERAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADVTA 444
            +I +   +N + T      +  G + ++ +P  F  +P  L ++GVYA TY+ AN I + C+    D  +PKF+GTS  N+  CVAKD+ FTR F + K RP+P S++ L+T+RD +T+ ASFN+P   SQ +    G+ K+ AD+ A
Sbjct:   60 IIDSAIFRNASGTEPLVAGLATGTRNLLTRPFHFIRQPACLFMFGVYAGTYLTANTIQSVCDYEGWDWFYPKFVGTSIANVGLCVAKDVCFTRWFGSGKARPVPWSSFALYTSRDCLTIFASFNLPSILSQKMTTSWGIDKRPADIAA 207          
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: A0A177WNW1_BATDL (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WNW1_BATDL)

HSP 1 Score: 115 bits (287), Expect = 4.540e-28
Identity = 57/127 (44.88%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   58 VREGVKEMILKPHVFHSRPEFLMIWGVYAVTYVAANMIITTCERAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADV 438
            +  G+  ++  P  F  +P FL+IWGVY+ TY+AAN I   C+R  V    PKFIG+S  N+   V KDL FTR F T   RP+P  +Y L+T RD MT+ ASFN+P   S  L++   +S  TAD 
Sbjct:  129 IAAGLTSLVRSPLHFLRQPSFLLIWGVYSGTYIAANSIQAICDRLFVPWQIPKFIGSSVANVGLSVLKDLYFTRAFGTGPARPVPMGSYSLYTLRDTMTIFASFNLPSIMSTKLKQHTKLSNGTADT 255          
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: A0A507F0P2_9FUNG (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507F0P2_9FUNG)

HSP 1 Score: 114 bits (284), Expect = 7.280e-28
Identity = 60/131 (45.80%), Postives = 84/131 (64.12%), Query Frame = 1
Query:   58 VREGVKEMILKP-HVFHSRPEFLMIWGVYAVTYVAANMIITTCE-RAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFA--TVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADV 438
            +  G K + L P HV    P F+++WGVY+ TY  AN++   CE R ++D  +PKF+  S  N+ S V KD+ FTR+FA  T + R +P S+ LL+TARD MT+ ASFN+P   SQ LQ ++G+ K TAD 
Sbjct:   95 IMSGFKSLFLHPTHVLRQMP-FILVWGVYSSTYCVANLVECLCEHRWKIDWFFPKFLAASTTNVVSSVLKDMYFTRLFASHTAQNRRVPWSSNLLYTARDSMTIYASFNLPSIVSQRLQLQVGVGKVTADT 224          
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: W7TN06_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN06_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.040e-27
Identity = 55/141 (39.01%), Postives = 82/141 (58.16%), Query Frame = 1
Query:   22 QNPAFTRVFPCAVREGVKEMILKPHVFHSRPEFLMIWGVYAVTYVAANMIITTCERAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADVTA 444
            QN A       ++    + ++  P  F  RPE LM+W VY VTY AAN++ TT +        P+ + T+  N+ + +AKD  + RMF TV PR +PAS+YL F +RD +T+ ASFN+P+P +  +  +LG+    ADV A
Sbjct:   69 QNQAGAASLESSIVSSFQSLVRDPLTFLRRPEVLMVWTVYGVTYFAANLVNTTSKAYDYQADVPRLLATTTANMGAGIAKDRAYARMFGTVAPRGLPASSYLFFFSRDLVTMGASFNVPEPLAHEMHTKLGVPAGAADVAA 209          
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: A0A1W0A6B7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6B7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.240e-27
Identity = 59/141 (41.84%), Postives = 80/141 (56.74%), Query Frame = 1
Query:   22 QNPAFTRVFPCAVREGVKEMILKPHVFHSRPEFLMIWGVYAVTYVAANMIITTCERAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADVTA 444
            +N A  R    A+ E   + +  P  F  R EFL+I+GVY  TYV+AN + T CE A+ D   PKF  T+AVN+A+C+ KD +FTRMF  + P   P  +  LF  RD +TV ASF  P   S+  QE  G +  T++  A
Sbjct:   52 ENAAGARPLKRALIEISMDFVRNPFKFVRRKEFLLIYGVYTATYVSANAVDTICEAAEADSKMPKFFSTTAVNMAACILKDREFTRMFGVIAPTNFPPLSMALFAVRDSLTVGASFIAPPYLSKKFQEH-GQTPSTSNSLA 191          
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: A0A1S8VV27_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VV27_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 1.960e-27
Identity = 56/126 (44.44%), Postives = 76/126 (60.32%), Query Frame = 1
Query:   67 GVKEMILKPHVFHSRPEFLMIWGVYAVTYVAANMIITTCERAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADVTA 444
            G+  +   P  F  +P FL+IWGVY+ TY+ AN I   C+   +   +PKFIG+S  N+   V KDL FTR F T   RP+PA++Y L+T RD MT+ ASFN+P   +  L+   GMS  TA+  A
Sbjct:  142 GLTTLFRTPLHFLRQPSFLLIWGVYSGTYIVANTIQAVCDHRDIPWQFPKFIGSSVANVGLSVLKDLYFTRAFGTGPARPVPATSYSLYTLRDTMTIFASFNLPAILAARLEATGGMSLGTAETVA 267          
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: A0A163AVY2_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A163AVY2_PHYB8)

HSP 1 Score: 111 bits (278), Expect = 4.180e-27
Identity = 59/132 (44.70%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   58 VREGVKEMILKPHVFHSRPEFLMIWGVYAVTYVAANMIITTCERAQVD---DTWPKFIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADVTA 444
            +R+G + ++  P  F + P+F  ++G Y  TY+AAN I TTCE   VD     + KFIGTS VN++ C+ KD  FTRMF     +P+P  TYLLF ARD MT+AASF  P   S  LQ+   +S      TA
Sbjct:   68 LRKGFRNLLANPLRFLATPQFGYVYGTYFSTYIAANTIETTCENYSVDLNRTAFLKFIGTSIVNMSLCIIKDRAFTRMFGVSAAKPLPLLTYLLFAARDSMTIAASFTAPSYISATLQQHKLVSNSDQGNTA 199          
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: A0A8K1CT18_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT18_PYTOL)

HSP 1 Score: 110 bits (276), Expect = 4.570e-27
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1
Query:   22 QNPAFTRVFPCAVREGVKEMILKPHVFHSRPEFLMIWGVYAVTYVAANMIITTCERAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTA 432
            +N +  R     V++   E +  P  F  R EF +++G+Y  TY +AN I T C+    D+  PKF+GT+AVN+  C+AKD  FT+MF  + P   P ++  LF  RD MTVAASFN P   +Q LQE+  +   T+
Sbjct:   47 ENASGARRLSDGVKQLSMEFLRHPLRFLHRREFRLVFGLYTATYASANSIETLCDATDTDNQMPKFVGTTAVNMTLCIAKDRAFTQMFGVIAPAAFPLASVGLFAIRDSMTVAASFNAPKIMAQQLQEKAHVKPSTS 183          
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.290e-27
Identity = 56/141 (39.72%), Postives = 83/141 (58.87%), Query Frame = 1
Query:   22 QNPAFTRVFPCAVREGVKEMILKPHVFHSRPEFLMIWGVYAVTYVAANMIITTCERAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFATVKPRPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADVTA 444
            +N +  R     +++   + +  P  F  + EFL+I+G+Y+ TYV+AN I T CE A+ D+  PKFIGT+AVN++ C+AKD  F RMF  + P   P ++  LF  RD +TVAASFN P   ++ L++   M    A   A
Sbjct:   47 ENASGARPLGVGLKQLAADFVRHPLRFVVKREFLLIFGLYSATYVSANAIDTMCEFAEKDNQMPKFIGTTAVNMSLCIAKDRAFARMFGVIAPAAFPLASIGLFAVRDSLTVAASFNAPKFLAKKLEDDAKMQPSRAGTIA 187          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66223.14218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5G8_9STRA2.230e-4754.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L0HLK1_SPIPD3.280e-2938.51Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A177WNW1_BATDL4.540e-2844.88Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A507F0P2_9FUNG7.280e-2845.80Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
W7TN06_9STRA1.040e-2739.01Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1W0A6B7_9STRA1.240e-2741.84Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1S8VV27_9FUNG1.960e-2744.44Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
A0A163AVY2_PHYB84.180e-2744.70Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
A0A8K1CT18_PYTOL4.570e-2740.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XCZ4_9STRA6.290e-2739.72Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66223contigH-elongata_contig66223:2008..2900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score119.0
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog588596.U9TUA2
EggNOG OGs28PN9@1,2QWAD@2759,39RZR@33154,3NY18@4751
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.098916-CDS-H-elongata_contig66223:2007..22681622931051.098916-CDS-H-elongata_contig66223:2007..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66223 2008..2268 +
1691679677.9550188-CDS-H-elongata_contig66223:2007..22681691679677.9550188-CDS-H-elongata_contig66223:2007..2268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66223 2008..2268 +
1622931051.1180506-CDS-H-elongata_contig66223:2717..29001622931051.1180506-CDS-H-elongata_contig66223:2717..2900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66223 2718..2900 +
1691679677.9711642-CDS-H-elongata_contig66223:2717..29001691679677.9711642-CDS-H-elongata_contig66223:2717..2900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66223 2718..2900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66223.14218.1prot_H-elongata_contig66223.14218.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66223 2008..2900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66223.14218.1

>prot_H-elongata_contig66223.14218.1 ID=prot_H-elongata_contig66223.14218.1|Name=mRNA_H-elongata_contig66223.14218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
LITTLFPQNPAFTRVFPCAVREGVKEMILKPHVFHSRPEFLMIWGVYAVT
YVAANMIITTCERAQVDDTWPKFIGTSAVNIASCVAKDLQFTRMFATVKP
RPIPASTYLLFTARDGMTVAASFNMPDPASQYLQERLGMSKKTADVTA
back to top

mRNA from alignment at H-elongata_contig66223:2008..2900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66223.14218.1 ID=mRNA_H-elongata_contig66223.14218.1|Name=mRNA_H-elongata_contig66223.14218.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=893bp|location=Sequence derived from alignment at H-elongata_contig66223:2008..2900+ (Himanthalia elongata Himel1 dioecious)
TTAATAACGACATTATTTCCACAAAACCCTGCATTTACCCGTGTATTTCC TTGCGCTGTTAGGGAAGGAGTCAAGGAAATGATTCTCAAGCCTCACGTTT TCCACAGCCGCCCGGAGTTTTTGATGATCTGGGGCGTGTACGCGGTAACG TACGTCGCCGCAAACATGATCATCACGACTTGTGAGAGAGCTCAGGTGGA CGACACGTGGCCAAAGTTCATCGGTACCAGCGCGGTCAACATCGCCAGTT GTGTCGCGAAGGTAACCTCGCTTAATTGTGCTTGTGAGAAACATATAAAA CAGAACTTTACAATAGCGCCGAGGTCCTGCGTAGTGTGTACATAATTCCC TATTCTTGTCTTGTGCAGGGTATTGATACCACGGTTAGCAATGTAAAACA GAAGCAGCGACTGGAGCTCCTCTCTCCTCCACTTCTCCGACGTCTAATGA CTCGCCCTTGCCGATACGCCTCTCTTAGATTACATTGAACCCATTTAGTT TTATTATTGTCTTAAAACGTCATATACTTTTCTTTCTTTTCTTTTTTCCC CAGCCTTCCGATTCAAGGGTCTCACAATGGTTTGTGCGTGTGTTGTCATT ATTTGTATTCGTGCGATTTCTCCGTGTAAATATCCCAAAACTCAAATATT CTTGTTGCCAATACTGCGTTTACCTTTATGCATGAACATTACTTTTCTTC GTTGGACCAGGACCTACAATTCACGCGCATGTTCGCAACGGTGAAGCCGA GGCCAATTCCAGCGTCGACGTACCTTCTATTCACAGCCCGTGACGGCATG ACCGTCGCAGCGTCGTTCAATATGCCGGATCCAGCGTCCCAATACCTCCA GGAGCGGCTGGGAATGTCGAAGAAAACTGCTGACGTCACTGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig66223:2008..2900+

>mRNA_H-elongata_contig66223.14218.1 ID=mRNA_H-elongata_contig66223.14218.1|Name=mRNA_H-elongata_contig66223.14218.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig66223:2008..2900+ (Himanthalia elongata Himel1 dioecious)
TTAATAACGACATTATTTCCACAAAACCCTGCATTTACCCGTGTATTTCC
TTGCGCTGTTAGGGAAGGAGTCAAGGAAATGATTCTCAAGCCTCACGTTT
TCCACAGCCGCCCGGAGTTTTTGATGATCTGGGGCGTGTACGCGGTAACG
TACGTCGCCGCAAACATGATCATCACGACTTGTGAGAGAGCTCAGGTGGA
CGACACGTGGCCAAAGTTCATCGGTACCAGCGCGGTCAACATCGCCAGTT
GTGTCGCGAAGTTAATAACGACATTATTTCCACAAAACCCTGCATTTACC
CGTGTATTTCCTTGCGCTGTTAGGGAAGGAGTCAAGGAAATGATTCTCAA
GCCTCACGTTTTCCACAGCCGCCCGGAGTTTTTGATGATCTGGGGCGTGT
ACGCGGTAACGTACGTCGCCGCAAACATGATCATCACGACTTGTGAGAGA
GCTCAGGTGGACGACACGTGGCCAAAGTTCATCGGTACCAGCGCGGTCAA
CATCGCCAGTTGTGTCGCGAAGGACCTACAATTCACGCGCATGTTCGCAA
CGGTGAAGCCGAGGCCAATTCCAGCGTCGACGTACCTTCTATTCACAGCC
CGTGACGGCATGACCGTCGCAGCGTCGTTCAATATGCCGGATCCAGCGTC
CCAATACCTCCAGGAGCGGCTGGGAATGTCGAAGAAAACTGCTGACGTCA
CTGCCGACCTACAATTCACGCGCATGTTCGCAACGGTGAAGCCGAGGCCA
ATTCCAGCGTCGACGTACCTTCTATTCACAGCCCGTGACGGCATGACCGT
CGCAGCGTCGTTCAATATGCCGGATCCAGCGTCCCAATACCTCCAGGAGC
GGCTGGGAATGTCGAAGAAAACTGCTGACGTCACTGCC
back to top