mRNA_H-elongata_contig66212.14216.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66212.14216.1
Unique NamemRNA_H-elongata_contig66212.14216.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: A0A6H5KYB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 7.810e-20
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 RIAGGMGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFARRVGASTPEETLDSIDPDE 189
            RI+GG+GAL+PWLP+KAYRPCP+F EAKYKY+RQGQSL+EVVFARR G      T+D I  D+
Sbjct:   81 RISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQG------TMDDITMDD 137
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: D7FRJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.110e-19
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 RIAGGMGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFARRVGASTPEETLDSIDPDE 189
            RI+GG+GAL+PWLP+KAYRPCP+F EAKYKY+RQGQSL+EVVFARR G      T+D I  D+
Sbjct:   83 RISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQG------TMDDITMDD 139
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: A0A7S2W5C1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W5C1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.720e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 RIAGGMGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFAR 135
            RIAGG+GA+ PW+P+KA+RPCP F+EA  +Y+R GQ LDE+ F R
Sbjct:   69 RIAGGIGAIFPWIPIKAFRPCPNFIEAGGRYTRTGQPLDEIAFGR 113
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: A0A1X6PGH9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PGH9_PORUM)

HSP 1 Score: 68.2 bits (165), Expect = 2.810e-11
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 RIAGGMGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFARR 138
            R+ GG+GA+LP+ P+KAYRPCP FV    KY+R+GQSLDE+ F R+
Sbjct:   53 RVTGGLGAVLPFWPIKAYRPCPDFVAVGGKYTRKGQSLDEIAFGRK 98
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: A0A7S1UYB2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYB2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.120e-11
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RIAGGMGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFAR 135
            RIAGG+GA++PW+P+KAYRPCP F++    Y+R GQ LDE+ F R
Sbjct:   78 RIAGGIGAVVPWIPIKAYRPCPNFIDKGGIYTRAGQGLDEIAFGR 122
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: A0A8J9SD27_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SD27_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 2.700e-10
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 RIAGGMGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFAR 135
            RIAGG+GA+  W P+KAYRPCPAF +A   Y+R+GQ LDE++F +
Sbjct:   76 RIAGGLGAVAEWWPIKAYRPCPAFTQAGGSYTRKGQILDEMLFGK 120
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: A0A7R9ZQN7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQN7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.570e-10
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 RIAGGMGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFAR 135
            RI GG+G + PW P+KAYRPCP F+E    Y R GQ+LDE+ F R
Sbjct:   67 RILGGIGVIFPWWPIKAYRPCPNFIEKGGLYQRSGQALDEIAFGR 111
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: A0A7S2EGH4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EGH4_TRICV)

HSP 1 Score: 64.7 bits (156), Expect = 9.380e-10
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 RIAGGMGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFAR 135
            RI GG+GA+L W P+KAYRPCP F++   +Y R GQ+LDE+ F R
Sbjct:   83 RITGGIGAVLDWWPIKAYRPCPNFIDRGGRYVRSGQALDEIAFGR 127
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: UPI00053C1157 (uncharacterized protein LOC104817582 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1157)

HSP 1 Score: 65.1 bits (157), Expect = 1.230e-9
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:    1 RIAGGMGAL--LPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFARRVGASTPEETLDSIDPDEIKK 198
            RI GG+  +    W P+KAYRPCPAF+ A  +Y R GQS+DEV F R   + TP  TL   D    KK
Sbjct:   89 RIQGGIATVPGFGWWPIKAYRPCPAFLAAGGRYQRTGQSMDEVAFGRGQQSKTPSRTLQEDDSQVSKK 156
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BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Match: A0A7S2IH14_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IH14_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.870e-9
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 RIAGGMGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFAR 135
            RI GG+  +LPW P+KAYRPCP F+ A  +Y R GQ LDE+ F R
Sbjct:   99 RILGGIAVILPWWPIKAYRPCPNFINAGGRYIRSGQPLDEIAFGR 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66212.14216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYB9_9PHAE7.810e-2068.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRJ4_ECTSI1.110e-1968.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2W5C1_9STRA2.720e-1262.22Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1X6PGH9_PORUM2.810e-1160.87Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1UYB2_9STRA4.120e-1160.00Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A8J9SD27_9CHLO2.700e-1060.00Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A7R9ZQN7_9STRA4.570e-1057.78Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2EGH4_TRICV9.380e-1057.78Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
UPI00053C11571.230e-948.53uncharacterized protein LOC104817582 isoform X1 n=... [more]
A0A7S2IH14_9STRA1.870e-957.78Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66212contigH-elongata_contig66212:944..2017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue5.4e-14
Seed eggNOG ortholog2880.D7FRJ4
EggNOG OGs2CGAC@1,2S3KG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLin-54 family
Ec32 orthologEc-09_000150.1
Exons2
Model size667
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66212.14216.1prot_H-elongata_contig66212.14216.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66212 1383..2002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.9193108-UTR-H-elongata_contig66212:943..13821622931050.9193108-UTR-H-elongata_contig66212:943..1382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66212 944..1382 -
1691679677.8654613-UTR-H-elongata_contig66212:943..13821691679677.8654613-UTR-H-elongata_contig66212:943..1382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66212 944..1382 -
1622931050.966245-UTR-H-elongata_contig66212:2002..20171622931050.966245-UTR-H-elongata_contig66212:2002..2017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66212 2003..2017 -
1691679677.9115832-UTR-H-elongata_contig66212:2002..20171691679677.9115832-UTR-H-elongata_contig66212:2002..2017Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66212 2003..2017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.9343207-CDS-H-elongata_contig66212:1382..14901622931050.9343207-CDS-H-elongata_contig66212:1382..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66212 1383..1490 -
1691679677.8867733-CDS-H-elongata_contig66212:1382..14901691679677.8867733-CDS-H-elongata_contig66212:1382..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66212 1383..1490 -
1622931050.95008-CDS-H-elongata_contig66212:1897..20021622931050.95008-CDS-H-elongata_contig66212:1897..2002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66212 1898..2002 -
1691679677.8990562-CDS-H-elongata_contig66212:1897..20021691679677.8990562-CDS-H-elongata_contig66212:1897..2002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66212 1898..2002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66212.14216.1

>prot_H-elongata_contig66212.14216.1 ID=prot_H-elongata_contig66212.14216.1|Name=mRNA_H-elongata_contig66212.14216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MGALLPWLPVKAYRPCPAFVEAKYKYSRQGQSLDEVVFARRVGASTPEET
LDSIDPDEIKKGAPDNESNE*
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mRNA from alignment at H-elongata_contig66212:944..2017-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66212.14216.1 ID=mRNA_H-elongata_contig66212.14216.1|Name=mRNA_H-elongata_contig66212.14216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1074bp|location=Sequence derived from alignment at H-elongata_contig66212:944..2017- (Himanthalia elongata Himel1 dioecious)
AGGATTGCTGGAGGTATGGGAGCGCTACTGCCATGGCTTCCGGTGAAAGC
GTATCGGCCCTGTCCAGCCTTTGTGGAAGCAAAGTATAAGTATAGCAGAC
AGGGTCAAAGTCTAGATGAGGTGGGAGTTTGTTGTTACTAGCACTTGAAC
CACCCTATTTTAGTCGCCTCATTACAGGAGATAGCTAGTCGAAACAAAGG
TTGTGTCGCTTCCAAAGGAGTGCTTTGAAGCGGAGAATGTCGACTACGTG
GTGAGCCAATAGAGCTCTCGACATGTAGCGTTGACAAAAGAACTTCCGAG
GAAAACTGCTGTTATGATCGGAAATATAGAGTCTATCTGTACAAGAGCCA
AAAGCATGAATTTTCAGTAGGCTCATATTTCCTCTTACACTTGTAGGTGT
GGTCAACCTTTTCTTACACTTGTCTTACACTTGTCTTACACTTGTCTGAG
CCTCTGTTGAACATTGATATTGGTTCTGAAGAGTCATTCCATTACCAACC
TCTCTATGTGTGCTTCTCGTGTTACAGGTGGTATTTGCACGACGTGTGGG
GGCATCCACGCCCGAGGAGACCTTGGACTCTATCGACCCAGACGAGATAA
AGAAAGGCGCACCAGACAATGAGTCAAACGAATAGGAAGCACGTTACATC
AGAATAGAGCTAGTGGCACGCCCCTCGAACAAAGCGTTTGCCACACAGCG
CATGTTGAGATCGAGATCGCCCGTTGGTAAGCAGCCGGATCGGTTGGTCG
GTCCTTCAGTAGACATCTTGTGTGTGAGGTCTATTCTACTTTGTCTGGTT
CAGTACAAGTAGTATGAGTAGATGTGACATATTCGCGTCGGAGTACTCAT
GAGAATATTTCGCTGTCCCGCGAAGCTCTAGATCCTTGCTATCTGCTGCC
CTCGAATTTTGCAGGGCAATTTTTGTTTTTTCAATTTCGAAGTGCAGCAA
GCATTTCATGGTGCAAAAAATGGCCTTGAAATCTTAAGCTTCAGCTGCAG
ACGACTTCAAAAATGACCATGCTTTCATGAGACTAATGTGTACGAGAAAC
GTATGTTATATTATTCACGTCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig66212:944..2017-

>mRNA_H-elongata_contig66212.14216.1 ID=mRNA_H-elongata_contig66212.14216.1|Name=mRNA_H-elongata_contig66212.14216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig66212:944..2017- (Himanthalia elongata Himel1 dioecious)
ATGGGAGCGCTACTGCCATGGCTTCCGGTGAAAGCGTATCGGCCCTGTCC
AGCCTTTGTGGAAGCAAAGTATAAGTATAGCAGACAGGGTCAAAGTCTAG
ATGAGATGGGAGCGCTACTGCCATGGCTTCCGGTGAAAGCGTATCGGCCC
TGTCCAGCCTTTGTGGAAGCAAAGTATAAGTATAGCAGACAGGGTCAAAG
TCTAGATGAGGTGGTATTTGCACGACGTGTGGGGGCATCCACGCCCGAGG
AGACCTTGGACTCTATCGACCCAGACGAGATAAAGAAAGGCGCACCAGAC
AATGAGTCAAACGAATAGGTGGTATTTGCACGACGTGTGGGGGCATCCAC
GCCCGAGGAGACCTTGGACTCTATCGACCCAGACGAGATAAAGAAAGGCG
CACCAGACAATGAGTCAAACGAATAG
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