mRNA_H-elongata_contig66183.14212.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66183.14212.1
Unique NamemRNA_H-elongata_contig66183.14212.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 3.200e-93
Identity = 178/278 (64.03%), Postives = 192/278 (69.06%), Query Frame = 1
Query:    1 MDTAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLF-------------GAD------LSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVS-LESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
            MDTAV ERL+DTY RMT D DSYVYLAAVQGLAALADALPGW IPRLVG+F             G D      L LSQRLKIGEAV+LSARRCGD MPK+AH FVNAFVVAARER++                                    S LES+ER HFRASCLSNLAEVCQLLRWSLGRFS D+VDL  G+L  ET  SEE+TL RRGA+FLL ++LRGAGGDVLE+VPA  LR AYRALK   G DRDE TRSHAR GL YLD AIRGQLF
Sbjct: 1148 MDTAVAERLIDTYTRMTGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTATAAAAAHGSAPGVDAAAATPLPLSQRLKIGEAVLLSARRCGDAMPKHAHLFVNAFVVAARERSSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLESKERCHFRASCLSNLAEVCQLLRWSLGRFSYDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRLAYRALKRAAGSDRDEITRSHARNGLGYLDAAIRGQLF 1425          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 6.330e-92
Identity = 183/316 (57.91%), Postives = 201/316 (63.61%), Query Frame = 1
Query:    1 MDTAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLFGA----------------------------DLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGY-----------SGRAGCDSGSDGSVDRG-------------------VREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
            MDTAV ERL+DTYARM  D DSYVYLAAVQGLAALADALPGW IPRLVG+F A                             L LSQRLKIGEAV+LSARRCGD MPKYAH FVNAFVVAARER++                      G AG  S    +V+                     V ++  +  SLES+ERYHFRASCLSNLAEVCQLLRWSLGRFS D+VDL  G+L  ET  SEE+TL RRGA+FLL ++LRGAGGDVLE+VPA  LR AYRALK     DRDE TRSHAR GL  LD AIRGQLF
Sbjct: 1157 MDTAVAERLMDTYARMAGDGDSYVYLAAVQGLAALADALPGWSIPRLVGIFTAAAAXXXXXXXXXXXXXXXSPAXXXXXATPLPLSQRLKIGEAVLLSARRCGDAMPKYAHLFVNAFVVAARERSSDGNXXXXXXXXXXXXXXXXXPGGDAGSASLGSAAVNXXXXXXXXXXXXXXXXXXAAQVNQKPSSSSSLESKERYHFRASCLSNLAEVCQLLRWSLGRFSCDVVDLAAGVLSTETGGSEESTLARRGASFLLGRVLRGAGGDVLEMVPAAELRVAYRALKRAAESDRDEVTRSHARNGLGCLDAAIRGQLF 1472          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA)

HSP 1 Score: 210 bits (535), Expect = 1.390e-58
Identity = 125/264 (47.35%), Postives = 160/264 (60.61%), Query Frame = 1
Query:   13 VLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLF------GAD-----LSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQL 771
            VL++ +D Y  M  D +SYVYLAAVQGL+ L+D  PG+ IP LV +F       AD     L+L+QRLK+GEAV+ +ARRCG+  PKYA  FV AFVVAARER                G DSG                 S+E+RER HFRASCLSNLAEVC LLRWSL  +++D+VDL +G L +ET   EEAT VRR + +LLS++L G G D   I+P  L++  YRAL++      D   R HA+ GL+ +D  +  QL
Sbjct:  851 VLDKFVDIYVLMAQDEESYVYLAAVQGLSVLSDVSPGYVIPTLVSIFCGARAGSADHSAPPLTLAQRLKVGEAVMFAARRCGEAAPKYAQHFVGAFVVAARERV---------------GGDSG-----------------SVETRERIHFRASCLSNLAEVCALLRWSLRPYARDVVDLALGALTLETGAGEEATHVRRASAYLLSRILAGTGSDAATIMPD-LIKPVYRALRIVASTVSDGVARFHAKAGLAEIDAIMMQQL 1081          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A7S3YE87_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YE87_HETAK)

HSP 1 Score: 151 bits (381), Expect = 1.140e-40
Identity = 94/267 (35.21%), Postives = 143/267 (53.56%), Query Frame = 1
Query:   25 LLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLF--------------------GADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRG 765
            LLD Y  M AD +SYVYLAAVQGL+ LA  LP   +P LV  F                     +++S +QR+K+GEA++ +AR+CG  + KY+ +F+ AF++ AR R+A                                  +V  +S +  +FR+SCLSNLAEVC LL+WSL R++QDI DL +GIL ME + S+EA   RRG+ +++ ++L          +    +++ YR LK+    D D   + +A++ +  +DV +RG
Sbjct:   11 LLDVYGEMLADEESYVYLAAVQGLSVLATNLPAMVLPFLVEKFTGKETTIKKEAGQKEPMRSTSSEMSWAQRVKVGEALMCAARKCGASISKYSQYFMRAFILGARMRSA----------------------------------DVEDDS-DWVNFRSSCLSNLAEVCGLLKWSLDRYAQDIFDLALGILQMEGTNSQEALAARRGSLYIMYKILNSLDSTNFAGIIGSHIKSMYRRLKIVAKSDCDSLCKHNAQMCIDVIDVFMRG 242          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A1V9ZHW9_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHW9_9STRA)

HSP 1 Score: 151 bits (382), Expect = 5.600e-38
Identity = 104/254 (40.94%), Postives = 136/254 (53.54%), Query Frame = 1
Query:   25 LLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLFGADL---SLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLFQ 777
            L+  +     DA+SYVYLA++Q LA+LAD  P   IP L+    AD    S+ QR+K+ EA++ +ARRCG+V+P YA  FV A++ A R  T                                      +ES E   FRASCLSNLAEVC LLRW++  F  D++    G+L +E  RS+    +RRGA F+L QLL   G +V EI  A  +   YR LKL V  D D  +R HA   LS LDV +RG+LFQ
Sbjct:  734 LMQLFLAQLLDAESYVYLASIQALASLADMHPATAIPLLLAT-AADTTQHSIDQRIKLSEALMFAARRCGEVLPAYARGFVYAYLHAIRTPTR------------------------------------DVESLEDATFRASCLSNLAEVCGLLRWAIHPFLADVLLCVKGVLEVERGRSDAHVALRRGAVFVLHQLLTLMGREVFEIA-AEHMTPIYRMLKL-VATDSDRVSRFHAEQALSELDVLMRGELFQ 948          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A6G0XAH2_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAH2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 6.850e-36
Identity = 94/255 (36.86%), Postives = 133/255 (52.16%), Query Frame = 1
Query:   16 LERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLV-GLFGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLFQ 777
            ++ L   + R   D DSYV+LAAVQ LA L D      IP L+  +     SL +R+K+ EA+V +ARRCG+++PKY+  FV A++   R+  +                             ++   E +        FRASCLSNLAEVC LL+WS+  +  D+V    GIL +    ++  T +RRGA FLL  +L+  GGD+ EIVP   +   YR LKL    ++D   R HA   L+ LD  +RG+LFQ
Sbjct:  707 IDLLFPLFVRHLEDNDSYVFLAAVQALAGLGDKYADKSIPMLLDAVKDKKYSLEKRIKLSEALVFTARRCGEIIPKYSQGFVYAYLHCIRKSDS-----------------------------QQDIVEAT--------FRASCLSNLAEVCGLLKWSIQTYIADVVGCVKGILEIGRQNTDAHTALRRGAIFLLFHMLQMMGGDIFEIVP-EYMSPIYRLLKLEASTEKDPVCRYHADQSLALLDTLMRGELFQ 923          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A6A5B0I4_9STRA (RTP1_C1 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B0I4_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.450e-35
Identity = 95/255 (37.25%), Postives = 126/255 (49.41%), Query Frame = 1
Query:   16 LERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGLFGADL--SLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
            +E L+       ADADSYVYLAAVQ LA L D      IP L+     D   S+ QR+K+ EA++ +ARRCGDVMPKY   FV  ++   R RT  +                                E +L        RASCLSNLAEVC LL W++  +  D+V    GIL  E   ++    +RRGA F+L  +L+  G D+LE VP  +    YR LK+    ++D   R HA   +  LD  +RG+LF
Sbjct:  169 VEALVALCVHHLADADSYVYLAAVQALAGLGDVYADKTIPLLLDALAQDATYSVEQRIKLSEALLFTARRCGDVMPKYGRAFVFGYLRCIRSRTLPNDA--------------------------NDIEEATL--------RASCLSNLAEVCGLLHWAISPYITDVVGCVRGILETERLATDAHIALRRGAVFVLYNMLQLMGRDILEAVPDAMT-PIYRLLKMEASTEKDAVCRFHAENSVKALDTIMRGELF 388          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A485LCX3_9STRA (Aste57867_18971 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCX3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.890e-35
Identity = 93/242 (38.43%), Postives = 127/242 (52.48%), Query Frame = 1
Query:   55 DADSYVYLAAVQGLAALADALPGWCIPRLVGLF--GADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
            DADSYV+LAAVQ LA L D      IP L+     GA  SL QR+K+ EA++ +ARRCG ++PKY+H FV  ++   R   +                             +    + +        FRASCLSNLAEVC LL+W++  +  D+V    GIL +E   ++  T +RRGA FLL  +L+  G D+ EIVP  +    YR LKL    + D+  R HA+  LS LD  +RG+LF
Sbjct:  712 DADSYVFLAAVQTLAGLGDVHADVTIPMLLAALQDGATYSLEQRIKLSEALLFTARRCGAMVPKYSHGFVYGYLKCIRSTAS-----------------------------QPDVVDAT--------FRASCLSNLAEVCGLLQWAIQPYIADVVGCVKGILEIERQPTDAHTALRRGAVFLLYHMLQLMGRDMFEIVPEHMT-PIYRLLKLEASTETDDVCRFHAQKSLSELDALMRGELF 915          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: K3X8E9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8E9_GLOUD)

HSP 1 Score: 141 bits (356), Expect = 1.530e-34
Identity = 100/260 (38.46%), Postives = 141/260 (54.23%), Query Frame = 1
Query:    7 TAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVG-LFGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARE-RTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREE--GFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
            T  +++L+  +     D +SYV+LAAVQGL+ L+DA P   I  LV  L   D SL +R+K+ EA++ +A+RCG+ +PKYA  FV A++   R  R    R    K +      DS  D   +    E   G     +E+      RASCLSNLAEVC LL+WSL  F  D++    GIL +E   +E    VRRGA FLL  L++  G  +LE++P +L +  Y  LK+    D+D     HAR  L  L+  +R +LF
Sbjct:  772 TPRIQQLVQIFLTHLEDGESYVFLAAVQGLSTLSDAHPDVAISLLVSALRDRDNSLEKRIKLSEALLFTAKRCGETLPKYAKVFVYAYLDCIRPPRGQSTRRTPSKRFQLIQEIDSSEDKEPEEASVETDAGGDNTLVEAT----LRASCLSNLAEVCVLLQWSLQPFLVDVMTCVFGILQLELDATESVVAVRRGAAFLLKYLVQLMGWKMLEVMPDQL-KPMYHMLKVVERTDKDSVVVFHARKALEALNDVMRTELF 1026          
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Match: A0A024U9C1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9C1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.750e-34
Identity = 92/241 (38.17%), Postives = 124/241 (51.45%), Query Frame = 1
Query:   55 DADSYVYLAAVQGLAALADALPGWCIPRLV-GLFGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYDRTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLSNLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLSQLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLDVAIRGQLF 774
            DADSYVYLAAVQ LA L D      IP L+  +    +S+ QR+K+GEA+V +ARRCG +MPKY   FV+ ++                      GC           +R         +S E   FRASCLSNLAEVC LL+W++  +  D+V    GIL  E   ++    +RRGA F+L  +L+  G D+LE +P  +    YR LK     + D   R HA  G+  LD  +RG+LF
Sbjct:  731 DADSYVYLAAVQALAGLGDVFADKTIPLLLDAVQDVKVSIEQRIKVGEALVFTARRCGAMMPKYGRAFVHGYL----------------------GC-----------IRRHPQATKMQDSLEEATFRASCLSNLAEVCGLLQWAIHPYITDVVACVRGILDTERLTTDAHIALRRGAVFVLYHMLQLFGRDILEAIPDAMT-PIYRLLKHEAASETDPVCRFHAENGVKELDTIMRGELF 937          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66183.14212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPL2_9PHAE3.200e-9364.03RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FHX3_ECTSI6.330e-9257.91RTP1_C1 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YW23_9STRA1.390e-5847.35RTP1_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3YE87_HETAK1.140e-4035.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1V9ZHW9_9STRA5.600e-3840.94RTP1_C1 domain-containing protein n=1 Tax=Achlya h... [more]
A0A6G0XAH2_9STRA6.850e-3636.86RTP1_C1 domain-containing protein n=1 Tax=Aphanomy... [more]
A0A6A5B0I4_9STRA1.450e-3537.25RTP1_C1 domain-containing protein n=2 Tax=Aphanomy... [more]
A0A485LCX3_9STRA5.890e-3538.43Aste57867_18971 protein n=1 Tax=Aphanomyces stella... [more]
K3X8E9_GLOUD1.530e-3438.46Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024U9C1_9STRA3.750e-3438.17Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66183contigH-elongata_contig66183:427..2164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.5
Seed ortholog evalue7.6e-82
Seed eggNOG ortholog2880.D7FHX3
Preferred nameTANGO6
KEGG rclassRC00961
KEGG koko:K01763,ko:K08489
KEGG ReactionR03599
KEGG Pathwayko00450,ko01100,ko04130,map00450,map01100,map04130
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0032940,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594
EggNOG free text desc.protein transport
EggNOG OGsKOG4653@1,KOG4653@2759
EC4.4.1.16
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size777
Cds size777
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66183.14212.1prot_H-elongata_contig66183.14212.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66183 427..2164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.5679383-CDS-H-elongata_contig66183:426..5791622931050.5679383-CDS-H-elongata_contig66183:426..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66183 427..579 +
1691679677.657741-CDS-H-elongata_contig66183:426..5791691679677.657741-CDS-H-elongata_contig66183:426..579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66183 427..579 +
1622931050.5838501-CDS-H-elongata_contig66183:642..8071622931050.5838501-CDS-H-elongata_contig66183:642..807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66183 643..807 +
1691679677.6690345-CDS-H-elongata_contig66183:642..8071691679677.6690345-CDS-H-elongata_contig66183:642..807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66183 643..807 +
1622931050.5993078-CDS-H-elongata_contig66183:957..12751622931050.5993078-CDS-H-elongata_contig66183:957..1275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66183 958..1275 +
1691679677.6775181-CDS-H-elongata_contig66183:957..12751691679677.6775181-CDS-H-elongata_contig66183:957..1275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66183 958..1275 +
1622931050.6148214-CDS-H-elongata_contig66183:2023..21641622931050.6148214-CDS-H-elongata_contig66183:2023..2164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66183 2024..2164 +
1691679677.6928935-CDS-H-elongata_contig66183:2023..21641691679677.6928935-CDS-H-elongata_contig66183:2023..2164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66183 2024..2164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66183.14212.1

>prot_H-elongata_contig66183.14212.1 ID=prot_H-elongata_contig66183.14212.1|Name=mRNA_H-elongata_contig66183.14212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
MDTAVLERLLDTYARMTADADSYVYLAAVQGLAALADALPGWCIPRLVGL
FGADLSLSQRLKIGEAVVLSARRCGDVMPKYAHFFVNAFVVAARERTAYD
RTGAGKGYSGRAGCDSGSDGSVDRGVREEGFTEVSLESRERYHFRASCLS
NLAEVCQLLRWSLGRFSQDIVDLGVGILLMETSRSEEATLVRRGATFLLS
QLLRGAGGDVLEIVPARLLRAAYRALKLTVGRDRDEATRSHARIGLSYLD
VAIRGQLFQ
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mRNA from alignment at H-elongata_contig66183:427..2164+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66183.14212.1 ID=mRNA_H-elongata_contig66183.14212.1|Name=mRNA_H-elongata_contig66183.14212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1738bp|location=Sequence derived from alignment at H-elongata_contig66183:427..2164+ (Himanthalia elongata Himel1 dioecious)
ATGGACACCGCCGTACTCGAGCGCCTCTTAGACACGTACGCGAGGATGAC CGCCGACGCCGACTCCTACGTTTATCTCGCCGCGGTGCAGGGGCTTGCCG CCCTCGCCGACGCCCTCCCGGGTTGGTGCATCCCCCGCCTGGTCGGTCTC TTTGTCGCCTCACCTCCAGGCGGTGCCAAGAAGGATAGGCCGCCGCCGGC TATGACAGCGTCTGAGGGGGCGGACTTGTCTCTGTCCCAGCGTCTGAAGA TCGGAGAAGCTGTGGTGCTGTCGGCGCGGAGGTGTGGCGATGTCATGCCC AAGTACGCGCACTTCTTCGTGAACGCGTTCGTCGTGGCCGCTCGGGAGCG GACGGCGTACGATAGAACTGGGGCCGGAAAAGTAAAGCATACACATTTCT CAGCGACGCGTGGGAGATCCTTCTCCTTCTCCTCCTCCCCCTGTGGCGTA GCGGCCCCTGACCGTGAAGAGTTGGAGGGTCACTCGAGCGCTGCAGCGAC GAAATTCAATCAAGAACAAGACGGCCGAAAGGGGTACAGCGGGAGGGCTG GATGCGACAGCGGGTCTGATGGATCAGTCGACCGCGGGGTCCGAGAAGAA GGGTTCACGGAAGTATCGCTGGAGAGCAGGGAGCGGTACCACTTCCGAGC GAGTTGCTTGTCGAATCTCGCCGAGGTGTGCCAGCTCTTGCGATGGTCTC TGGGAAGATTTTCGCAGGACATCGTGGACCTGGGCGTGGGCATACTGCTC ATGGAAACCTCGAGGTCGGAGGAAGCCACCCTCGTGAGGCGGGGGGCTAC CTTCCTGTTGAGCCAGCTTCTTCGAGGGGCGGGGGGCGACGTTCTGGAGG TGATGTGACCCCCCTGCCGAATTTTCTTTGGTTGTACCTGACGGATGGCT TGGTAGCCGTGTTATATACAGTAAGGAAGGTACCATTTCAGATGATGGGA AGCATTCCGGTGGTCAAACGTTCAAGAAGGGGCGGTAAGGCGGTCAGAGG GGCATTATTATATTCTTCTTCCATGCGTGTTCCGTTTCGGCGTCATTTTA CACCCCAAAGGAGATGTAAAATGACGCCCATACGCCGTGATGTTCGAAGA GATCAAGGACATGCACTCTCCTGCCGATCTCCATCAGATGTACCCAGGCT CTTTCACTACTCGTATTTAGCCGGTAGAGCCTAGCTCCTTACATTAGGCA CATCCAGTTCGGACGCGCCAACACATTATTGACGTCATCCCTCGAACCGT TAGCGTTTGAGGGAGTTAACCCAATTAGTCTCCGCCACAAATCATGTGCG GTTAAATTGCACATAACCGCGCAATCCGGCTCTGTCATGCTAGCTCTTCT AGGCTACTCTCGCATTGATCCTCCTAAAGGGGCGTTCAATCATACTTACT TCAAAAACCTCTATTAATGATCAAACGTGACAAAGGAGACATATTATCTC TACATTTCGTATCTAAGTCATCAATACCTTGCGCTTCCTTTTCTGCTTCC TTGTTCGCTATATAGCTCCGGTCGGACCCTAATGAACCAACGCTATCCCG TGTATGTGTTTGTGATCACCTTGCCCATGGCCACTACGGGGTCGCAGATC GTTCCCGCGAGATTACTGCGCGCCGCGTACCGGGCTCTTAAGCTCACGGT TGGACGCGACCGCGACGAGGCAACCCGATCGCACGCGAGGATCGGCTTGA GCTACCTGGACGTCGCCATCCGCGGCCAACTCTTCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig66183:427..2164+

>mRNA_H-elongata_contig66183.14212.1 ID=mRNA_H-elongata_contig66183.14212.1|Name=mRNA_H-elongata_contig66183.14212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig66183:427..2164+ (Himanthalia elongata Himel1 dioecious)
ATGGACACCGCCGTACTCGAGCGCCTCTTAGACACGTACGCGAGGATGAC
CGCCGACGCCGACTCCTACGTTTATCTCGCCGCGGTGCAGGGGCTTGCCG
CCCTCGCCGACGCCCTCCCGGGTTGGTGCATCCCCCGCCTGGTCGGTCTC
TTTATGGACACCGCCGTACTCGAGCGCCTCTTAGACACGTACGCGAGGAT
GACCGCCGACGCCGACTCCTACGTTTATCTCGCCGCGGTGCAGGGGCTTG
CCGCCCTCGCCGACGCCCTCCCGGGTTGGTGCATCCCCCGCCTGGTCGGT
CTCTTTGGGGCGGACTTGTCTCTGTCCCAGCGTCTGAAGATCGGAGAAGC
TGTGGTGCTGTCGGCGCGGAGGTGTGGCGATGTCATGCCCAAGTACGCGC
ACTTCTTCGTGAACGCGTTCGTCGTGGCCGCTCGGGAGCGGACGGCGTAC
GATAGAACTGGGGCCGGAAAAGGGGCGGACTTGTCTCTGTCCCAGCGTCT
GAAGATCGGAGAAGCTGTGGTGCTGTCGGCGCGGAGGTGTGGCGATGTCA
TGCCCAAGTACGCGCACTTCTTCGTGAACGCGTTCGTCGTGGCCGCTCGG
GAGCGGACGGCGTACGATAGAACTGGGGCCGGAAAAGGGTACAGCGGGAG
GGCTGGATGCGACAGCGGGTCTGATGGATCAGTCGACCGCGGGGTCCGAG
AAGAAGGGTTCACGGAAGTATCGCTGGAGAGCAGGGAGCGGTACCACTTC
CGAGCGAGTTGCTTGTCGAATCTCGCCGAGGTGTGCCAGCTCTTGCGATG
GTCTCTGGGAAGATTTTCGCAGGACATCGTGGACCTGGGCGTGGGCATAC
TGCTCATGGAAACCTCGAGGTCGGAGGAAGCCACCCTCGTGAGGCGGGGG
GCTACCTTCCTGTTGAGCCAGCTTCTTCGAGGGGCGGGGGGCGACGTTCT
GGAGGGGTACAGCGGGAGGGCTGGATGCGACAGCGGGTCTGATGGATCAG
TCGACCGCGGGGTCCGAGAAGAAGGGTTCACGGAAGTATCGCTGGAGAGC
AGGGAGCGGTACCACTTCCGAGCGAGTTGCTTGTCGAATCTCGCCGAGGT
GTGCCAGCTCTTGCGATGGTCTCTGGGAAGATTTTCGCAGGACATCGTGG
ACCTGGGCGTGGGCATACTGCTCATGGAAACCTCGAGGTCGGAGGAAGCC
ACCCTCGTGAGGCGGGGGGCTACCTTCCTGTTGAGCCAGCTTCTTCGAGG
GGCGGGGGGCGACGTTCTGGAGATCGTTCCCGCGAGATTACTGCGCGCCG
CGTACCGGGCTCTTAAGCTCACGGTTGGACGCGACCGCGACGAGGCAACC
CGATCGCACGCGAGGATCGGCTTGAGCTACCTGGACGTCGCCATCCGCGG
CCAACTCTTCCAGATCGTTCCCGCGAGATTACTGCGCGCCGCGTACCGGG
CTCTTAAGCTCACGGTTGGACGCGACCGCGACGAGGCAACCCGATCGCAC
GCGAGGATCGGCTTGAGCTACCTGGACGTCGCCATCCGCGGCCAACTCTT
CCAG
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