mRNA_H-elongata_contig118445.1422.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118445.1422.1
Unique NamemRNA_H-elongata_contig118445.1422.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig118445.1422.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.760e-7
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   40 NSNYGRTSYVKHTRLNKSKSYVRSAESIILDRLMEILAFFDEWHDTLEQ 186
            N +YGRT + +  ++NK K YV SAE  IL+RLMEIL +FD+W+D L++
Sbjct:  842 NGDYGRTKFERRAKINKMKGYVTSAEDPILERLMEILRYFDDWNDMLQE 890
[Close]
BLAST of mRNA_H-elongata_contig118445.1422.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 8.840e-6
Identity = 55/183 (30.05%), Postives = 77/183 (42.08%), Query Frame = 1 
Query:   40 NSNYGRTSYVKHTRLNKSKSYVRSAESIILDRLMEILAFFDEWHDTLEQRKSEGGXXXXXXDWERYMP-----LPLPLRRPTLIQNRQVVEQRGPIYQPSQYQPALL---------QDIYEHKFSHIHMIRMNLEAQGNPTARTANRNHGPCWRTINEACMDIR-HTRLNARKNTSA--GDDF 537
            N NYGR+   +     K    +RS ES  +DRL+EIL FFD+W  TLE++    G       W+++         L L     +   + + +    +Q     P            QDI EH+FSHI   R  L    NPTAR A +        + + C       R NA +N +A  G DF
Sbjct:   64 NGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLG-WKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHI---RAALGTHRNPTAREAKKRSA-----VGDLCRATNGKRRRNASRNPNARSGGDF 237
[Close]
BLAST of mRNA_H-elongata_contig118445.1422.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.100e-5
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   46 NYGRTSYVKHTRLNKSKSYVRSAESIILDRLMEILAFFDEWHDTLE 183
            +YGRT + +  ++NK K YV SA+  IL+RL+EIL +FD+W+D ++
Sbjct:  192 DYGRTKFERRAQINKMKGYVTSADDPILERLVEILRYFDDWNDMMQ 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118445.1422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZI2_ECTSI1.760e-753.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5I6_9PHAE8.840e-630.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6I9_9PHAE2.100e-547.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118445contigH-elongata_contig118445:688..1532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118445.1422.1prot_H-elongata_contig118445.1422.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118445 688..1394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.8094068-CDS-H-elongata_contig118445:687..9981622929691.8094068-CDS-H-elongata_contig118445:687..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118445 688..998 -
1691679120.7529104-CDS-H-elongata_contig118445:687..9981691679120.7529104-CDS-H-elongata_contig118445:687..998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118445 688..998 -
1622929691.8354812-CDS-H-elongata_contig118445:1195..13941622929691.8354812-CDS-H-elongata_contig118445:1195..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118445 1196..1394 -
1691679120.7619598-CDS-H-elongata_contig118445:1195..13941691679120.7619598-CDS-H-elongata_contig118445:1195..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118445 1196..1394 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.8592255-UTR-H-elongata_contig118445:1394..15321622929691.8592255-UTR-H-elongata_contig118445:1394..1532Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118445 1395..1532 -
1691679120.7699275-UTR-H-elongata_contig118445:1394..15321691679120.7699275-UTR-H-elongata_contig118445:1394..1532Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118445 1395..1532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118445.1422.1

>prot_H-elongata_contig118445.1422.1 ID=prot_H-elongata_contig118445.1422.1|Name=mRNA_H-elongata_contig118445.1422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MEILAFFDEWHDTLEQRKSEGGGGGDGEDWERYMPLPLPLRRPTLIQNRQ
VVEQRGPIYQPSQYQPALLQDIYEHKFSHIHMIRMNLEAQGNPTARTANR
NHGPCWRTINEACMDIRHTRLNARKNTSAGDDFNLADLRSRIMMAVTTGI
DGVTFFFNSSRLKFKSGSD*
back to top

mRNA from alignment at H-elongata_contig118445:688..1532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118445.1422.1 ID=mRNA_H-elongata_contig118445.1422.1|Name=mRNA_H-elongata_contig118445.1422.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=845bp|location=Sequence derived from alignment at H-elongata_contig118445:688..1532- (Himanthalia elongata Himel1 dioecious)
TGTGATGAGTTTACTTCTCCTTAATGCAGCATTACCTGTAACAGTAACTA
CGGCCGCACCAGCTATGTAAAGCACACAAGGTTGAATAAATCGAAGAGCT
ACGTGAGGTCGGCAGAATCAATCATCTTGGACCGCCTCATGGAAATCTTG
GCGTTCTTCGACGAGTGGCACGACACCCTCGAGCAAAGGAAATCAGAAGG
AGGAGGGGGAGGGGACGGAGAAGACTGGGAGAGGTATATGCCGTTACCGT
TACCTCTTCGCCGACCCACACTTATTCAAAATCGACAGGTTGTCGAACAA
CGAGGGCCGATATATCAACCCAGCCAATATCAGCCAGGTATGTCAGGTAG
ATGACGTCGAATGGGGGGGGTGTGCGCGGGTGGTGGGGATGCTTTGTGTG
ACACTGGAAATTAACACGTTAGTCATTCCCTAAGTCACTTATTCAACGAG
GCGTATCATATTCACCGCCTGGGTCTACGGAAGATATACCACATTTCACC
TTTTTGTACTGCCACCCTCTGTTGTCCTGTTCAGCGTTGTTGCAGGATAT
TTATGAGCATAAATTTTCTCACATTCACATGATTCGGATGAACCTGGAAG
CCCAGGGGAATCCCACAGCCCGCACGGCGAATAGAAATCACGGTCCTTGC
TGGCGGACCATCAACGAGGCGTGCATGGACATACGACATACACGACTAAA
TGCCAGAAAGAACACTAGCGCTGGAGACGATTTCAACCTGGCTGACCTGA
GGAGTAGAATCATGATGGCCGTAACGACGGGTATCGACGGGGTTACATTT
TTTTTTAATTCCAGCAGGTTGAAATTTAAATCGGGCTCTGATTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig118445:688..1532-

>mRNA_H-elongata_contig118445.1422.1 ID=mRNA_H-elongata_contig118445.1422.1|Name=mRNA_H-elongata_contig118445.1422.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig118445:688..1532- (Himanthalia elongata Himel1 dioecious)
ATGGAAATCTTGGCGTTCTTCGACGAGTGGCACGACACCCTCGAGCAAAG
GAAATCAGAAGGAGGAGGGGGAGGGGACGGAGAAGACTGGGAGAGGTATA
TGCCGTTACCGTTACCTCTTCGCCGACCCACACTTATTCAAAATCGACAG
GTTGTCGAACAACGAGGGCCGATATATCAACCCAGCCAATATCAGCCAGA
TGGAAATCTTGGCGTTCTTCGACGAGTGGCACGACACCCTCGAGCAAAGG
AAATCAGAAGGAGGAGGGGGAGGGGACGGAGAAGACTGGGAGAGGTATAT
GCCGTTACCGTTACCTCTTCGCCGACCCACACTTATTCAAAATCGACAGG
TTGTCGAACAACGAGGGCCGATATATCAACCCAGCCAATATCAGCCAGCG
TTGTTGCAGGATATTTATGAGCATAAATTTTCTCACATTCACATGATTCG
GATGAACCTGGAAGCCCAGGGGAATCCCACAGCCCGCACGGCGAATAGAA
ATCACGGTCCTTGCTGGCGGACCATCAACGAGGCGTGCATGGACATACGA
CATACACGACTAAATGCCAGAAAGAACACTAGCGCTGGAGACGATTTCAA
CCTGGCTGACCTGAGGAGTAGAATCATGATGGCCGTAACGACGGGTATCG
ACGGGGTTACATTTTTTTTTAATTCCAGCAGGTTGAAATTTAAATCGGGC
TCTGATTAGCGTTGTTGCAGGATATTTATGAGCATAAATTTTCTCACATT
CACATGATTCGGATGAACCTGGAAGCCCAGGGGAATCCCACAGCCCGCAC
GGCGAATAGAAATCACGGTCCTTGCTGGCGGACCATCAACGAGGCGTGCA
TGGACATACGACATACACGACTAAATGCCAGAAAGAACACTAGCGCTGGA
GACGATTTCAACCTGGCTGACCTGAGGAGTAGAATCATGATGGCCGTAAC
GACGGGTATCGACGGGGTTACATTTTTTTTTAATTCCAGCAGGTTGAAAT
TTAAATCGGGCTCTGATTAG
back to top