mRNA_H-elongata_contig66180.14211.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66180.14211.1
Unique NamemRNA_H-elongata_contig66180.14211.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66180.14211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66180contigH-elongata_contig66180:1505..2107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.382047-CDS-H-elongata_contig66180:1504..15911622931050.382047-CDS-H-elongata_contig66180:1504..1591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66180 1505..1591 -
1691679677.6067245-CDS-H-elongata_contig66180:1504..15911691679677.6067245-CDS-H-elongata_contig66180:1504..1591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66180 1505..1591 -
1622931050.3937905-CDS-H-elongata_contig66180:1861..21071622931050.3937905-CDS-H-elongata_contig66180:1861..2107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66180 1862..2107 -
1691679677.6153646-CDS-H-elongata_contig66180:1861..21071691679677.6153646-CDS-H-elongata_contig66180:1861..2107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66180 1862..2107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66180.14211.1prot_H-elongata_contig66180.14211.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66180 1505..2107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66180.14211.1

>prot_H-elongata_contig66180.14211.1 ID=prot_H-elongata_contig66180.14211.1|Name=mRNA_H-elongata_contig66180.14211.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
LSGDRRESLGRFPDAAVREHFLQHMRAHMVGGGAMLSPPDSPHAATNVHD
DSASSLEDSSRDMPHHHHQQLKLHHHHYQQQLSYRGPASHVSSAEGQWQQ
QQQQPPYSQSQ
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mRNA from alignment at H-elongata_contig66180:1505..2107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66180.14211.1 ID=mRNA_H-elongata_contig66180.14211.1|Name=mRNA_H-elongata_contig66180.14211.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at H-elongata_contig66180:1505..2107- (Himanthalia elongata Himel1 dioecious)
CTCTCTGGTGACCGTAGGGAGTCTCTAGGTCGTTTCCCGGACGCGGCGGT
GAGAGAACACTTCCTGCAGCACATGCGCGCGCATATGGTCGGCGGAGGTG
CCATGCTATCGCCCCCCGACTCCCCGCACGCAGCGACGAACGTGCACGAC
GACTCGGCCAGCTCGCTGGAGGACAGCTCTCGCGACATGCCGCACCATCA
CCATCAACAGCTCAAGCTGCACCATCACCACTATCAGCAGCAGCTGGTAA
GCACTTTTCAGGGCTTTGGCAATATATTTATCTCGCGAGCGCGCGTACGT
ACGTACGCGTGATCTTGTCATTGTCAGCGTCGATCCCTTTCTCTCTCTTT
CTTTCTATTTTTATGTTGGCAATGGGAAGCCTCCGCCCGATGCGCCCCGC
GGCTTGAAACTCTTCCGCTTGCTCGCCTTCCTTGGTGTCTGTACATTTTC
TCCCTCGTCCTTAATGTTTTGTGTGTGTGTGTGTGTCTCGCGTGTCATAT
ATTGCCGTCGTCAAAGAGTTACCGAGGGCCAGCGTCTCACGTCTCCAGTG
CGGAAGGGCAGTGGCAGCAGCAGCAGCAGCAGCCTCCGTATTCTCAATCC
CAG
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Coding sequence (CDS) from alignment at H-elongata_contig66180:1505..2107-

>mRNA_H-elongata_contig66180.14211.1 ID=mRNA_H-elongata_contig66180.14211.1|Name=mRNA_H-elongata_contig66180.14211.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig66180:1505..2107- (Himanthalia elongata Himel1 dioecious)
CTCTCTGGTGACCGTAGGGAGTCTCTAGGTCGTTTCCCGGACGCGGCGGT
GAGAGAACACTTCCTGCAGCACATGCGCGCGCATATGGTCGGCGGAGGTG
CCATGCTATCGCCCCCCGACTCCCCGCACGCAGCGACGAACGTGCACGAC
GACTCGGCCAGCTCGCTGGAGGACAGCTCTCGCGACATGCCGCACCATCA
CCATCAACAGCTCAAGCTGCACCATCACCACTATCAGCAGCAGCTGCTCT
CTGGTGACCGTAGGGAGTCTCTAGGTCGTTTCCCGGACGCGGCGGTGAGA
GAACACTTCCTGCAGCACATGCGCGCGCATATGGTCGGCGGAGGTGCCAT
GCTATCGCCCCCCGACTCCCCGCACGCAGCGACGAACGTGCACGACGACT
CGGCCAGCTCGCTGGAGGACAGCTCTCGCGACATGCCGCACCATCACCAT
CAACAGCTCAAGCTGCACCATCACCACTATCAGCAGCAGCTGAGTTACCG
AGGGCCAGCGTCTCACGTCTCCAGTGCGGAAGGGCAGTGGCAGCAGCAGC
AGCAGCAGCCTCCGTATTCTCAATCCCAGAGTTACCGAGGGCCAGCGTCT
CACGTCTCCAGTGCGGAAGGGCAGTGGCAGCAGCAGCAGCAGCAGCCTCC
GTATTCTCAATCCCAG
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