prot_H-elongata_contig66156.14208.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig66156.14208.1
Unique Nameprot_H-elongata_contig66156.14208.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length267
Homology
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BLAST of mRNA_H-elongata_contig66156.14208.1 vs. uniprot
Match: D8LBZ7_ECTSI (Proteasome assembly chaperone 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ7_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 7.630e-73
Identity = 139/279 (49.82%), Postives = 167/279 (59.86%), Query Frame = 0 
Query:    1 PVVGYEVFGPGQSPQLCVNLELHRFADRGVTVLQQRGPVFPGEEQAFAKELMLWARESGFKSILALAGADAAEGLDPTPTLGRGAIKRFRARKPPRNLPVKPPPSCAVEEALRDAGVGVFDASGAMVDDGDRYSVLAMAPM-------EGDSTARGLATAEESGFGRDGAREEAGALEASGYAEALWRLPPLPTGTGVAGHLCREAALSQDGVDA-----SPPLVLLLHFCGEGDNTPHAVSMADTVNSALGIFPESGGPSSFSSGDFGWSSPLSWVSL 267
            P  GYEVF PGQ P LCV+LELHRFA  GVTVLQQRG V PGEE++FA EL+ WARESGFK +LAL GADAAEGLDPTP +GRG +KR+RA      L  + P  C +EEAL   G+G FD +G M   G   +++A APM        G + A G+                     A         LPPLP+GTGVAG LC EA+ ++   D      +PPLV+LL FCGEGDNTP A+ MA  VN++L + P  GG       +  WSSPLSW SL
Sbjct:   63 PAAGYEVFSPGQPPVLCVSLELHRFAKSGVTVLQQRGAVLPGEERSFAAELVEWARESGFKDVLALTGADAAEGLDPTP-IGRGGMKRYRAGTSAAALAPQSPEPCPLEEALSRVGIGAFDVAGVM--QGGWQNLMA-APMGGGALDAPGGAAAGGVXXXXXXXXXXXXXXXXXXXXXAGNETAMPPNLPPLPSGTGVAGFLCTEASSTRTAADGETEGPTPPLVVLLRFCGEGDNTPEAIEMAQAVNASLKLLP--GGGDGEGEAEVRWSSPLSWASL 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66156.14208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBZ7_ECTSI7.630e-7349.82Proteasome assembly chaperone 2 n=2 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038389Proteasome assembly chaperone 2 superfamilyGENE3D3.40.50.10900coord: 1..98
e-value: 6.6E-7
score: 30.7
IPR019151Proteasome assembly chaperone 2PFAMPF09754PAC2coord: 13..138
e-value: 1.3E-8
score: 35.2
IPR016562Proteasome assembly chaperone 2, eukaryoticPANTHERPTHR12970TUMOR NECROSIS FACTOR SUPERFAMILY, MEMBER 5-INDUCED PROTEIN 1 CLAST3coord: 211..267
coord: 1..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66156contigH-elongata_contig66156:41..3377 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66156.14208.1mRNA_H-elongata_contig66156.14208.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig66156 41..3377 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig66156.14208.1 ID=prot_H-elongata_contig66156.14208.1|Name=mRNA_H-elongata_contig66156.14208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
PVVGYEVFGPGQSPQLCVNLELHRFADRGVTVLQQRGPVFPGEEQAFAKE
LMLWARESGFKSILALAGADAAEGLDPTPTLGRGAIKRFRARKPPRNLPV
KPPPSCAVEEALRDAGVGVFDASGAMVDDGDRYSVLAMAPMEGDSTARGL
ATAEESGFGRDGAREEAGALEASGYAEALWRLPPLPTGTGVAGHLCREAA
LSQDGVDASPPLVLLLHFCGEGDNTPHAVSMADTVNSALGIFPESGGPSS
FSSGDFGWSSPLSWVSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038389PSMG2_sf
IPR019151Proteasome_assmbl_chaperone_2
IPR016562Proteasome_assmbl_chp_2_euk