mRNA_H-elongata_contig66134.14206.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66134.14206.1
Unique NamemRNA_H-elongata_contig66134.14206.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: D7G3Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.870e-32
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQFHRSHIGRAPNFR 201
            QEHENRFWTTV FCFSGALVFVHDSPVALGQWSP LGF+ V +FT++VHS DRQ HRS IGRAPNFR
Sbjct:   63 QEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPVLGFLFVMMFTFSVHSYDRQLHRSRIGRAPNFR 129          
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: A0A6H5K785_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K785_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.240e-25
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQ 162
            QEHENRFWTTV FCFSGALVFVHDSPVALGQWSP LGF+ V +FT++VHS DRQ
Sbjct:   63 QEHENRFWTTVAFCFSGALVFVHDSPVALGQWSPVLGFLFVMMFTFSVHSYDRQ 116          
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: A0A0P1AH66_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AH66_PLAHL)

HSP 1 Score: 83.6 bits (205), Expect = 3.500e-17
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQFHRSHIGRAPNFR 201
            QE ENRFWT   F FS A+++V DSP+A+GQWS TLG V V +FT +VH  DR  HR  I R P  +
Sbjct:   95 QEFENRFWTGTAFLFSAAVLYVKDSPLAVGQWSSTLGLVLVFIFTMSVHFFDRFLHRQEISRRPKLK 161          
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: F0WSR9_9STRA (Uncharacterized protein AlNc14C237G9414 n=2 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WSR9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.220e-16
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQFHRSHIGR 186
            QE ENRFWTT  F FS A++++ DSP+A+G+W P+LG++ VT FT  +H LDR  HR  I R
Sbjct:   97 QEFENRFWTTTAFLFSTAVMYIRDSPLAIGRWHPSLGWILVTTFTLFIHFLDRFIHRQAISR 158          
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: D0P0X3_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P0X3_PHYIT)

HSP 1 Score: 80.9 bits (198), Expect = 3.090e-16
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQFHRSHIGRAPNFR 201
            QE ENRFWT   F FS AL+++ DSP+A+GQW+ TLG V V  FT +VH  DR  HR  I R P  +
Sbjct:   82 QEFENRFWTGTAFMFSAALLYIKDSPLAVGQWNSTLGLVLVFGFTMSVHFFDRFLHRQEISRRPRLK 148          
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: A0A833SGW7_PHYIN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A833SGW7_PHYIN)

HSP 1 Score: 80.9 bits (198), Expect = 3.100e-16
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQFHRSHIGRAPNFR 201
            QE ENRFWT   F FS AL+++ DSP+A+GQW+ TLG V V  FT +VH  DR  HR  I R P  +
Sbjct:  105 QEFENRFWTGTAFMFSAALLYIKDSPLAVGQWNSTLGLVLVFGFTMSVHFFDRFLHRQEISRRPRLK 171          
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: M4C4Y7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4Y7_HYAAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.790e-16
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQFHRSHIGRAPNFR 201
            QE ENRFWT   F FS A++++ DSP+A+GQW+ TLG V V  FT +VH  DR  HR  I R P  +
Sbjct:   37 QEFENRFWTGTAFLFSAAVLYIRDSPLAVGQWNSTLGLVLVFGFTMSVHYFDRFLHRQEISRRPRLK 103          
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: A0A662X9P1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9P1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.790e-16
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQFHRSHIGRAP 192
            QE ENRFWT   F FS A++++ DSP+A+GQW+ TLG V V  FT +VH  DR  HR  I R P
Sbjct:  111 QEFENRFWTGTAFLFSAAVLYIKDSPLAVGQWNSTLGLVLVFSFTMSVHYFDRFLHRQEISRRP 174          
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: A0A2P4YCM6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCM6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.210e-16
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQFHRSHIGRAPNFR 201
            QE ENRFWT   F FS A++++ DSP+A+GQW+ TLG V V  FT +VH  DR  HR  I R P  +
Sbjct:  110 QEFENRFWTGTAFMFSAAVLYIKDSPLAVGQWNSTLGLVLVFGFTMSVHFFDRFLHRQEISRRPRLK 176          
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Match: D0N9P7_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N9P7_PHYIT)

HSP 1 Score: 79.7 bits (195), Expect = 7.860e-16
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHSLDRQFHRSHIGRAPNFR 201
            QE ENRFWT   F FS A+V++ DSP+A+GQWS +LG V V  FT +VH  DR  HR  I R P  +
Sbjct:   37 QEFENRFWTGTAFLFSAAVVYIKDSPLAVGQWSSSLGLVLVFGFTASVHYFDRFLHRQKISRRPRLK 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66134.14206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Z8_ECTSI1.870e-3283.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K785_9PHAE7.240e-2583.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0P1AH66_PLAHL3.500e-1755.22Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
F0WSR9_9STRA1.220e-1654.84Uncharacterized protein AlNc14C237G9414 n=2 Tax=Al... [more]
D0P0X3_PHYIT3.090e-1653.73Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A833SGW7_PHYIN3.100e-1653.73Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
M4C4Y7_HYAAE5.790e-1652.24Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A662X9P1_9STRA5.790e-1654.69Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A2P4YCM6_9STRA6.210e-1652.24Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
D0N9P7_PHYIT7.860e-1653.73Uncharacterized protein n=2 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66134contigH-elongata_contig66134:1699..2291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.4e-27
Seed eggNOG ortholog2880.D7G3Z8
EggNOG OGs28KJH@1,2QT0Y@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.1692255-CDS-H-elongata_contig66134:1698..18601622931050.1692255-CDS-H-elongata_contig66134:1698..1860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66134 1699..1860 +
1691679677.4990704-CDS-H-elongata_contig66134:1698..18601691679677.4990704-CDS-H-elongata_contig66134:1698..1860Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66134 1699..1860 +
1622931050.1868117-CDS-H-elongata_contig66134:2249..22911622931050.1868117-CDS-H-elongata_contig66134:2249..2291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66134 2250..2291 +
1691679677.5103247-CDS-H-elongata_contig66134:2249..22911691679677.5103247-CDS-H-elongata_contig66134:2249..2291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66134 2250..2291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66134.14206.1prot_H-elongata_contig66134.14206.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66134 1699..2291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66134.14206.1

>prot_H-elongata_contig66134.14206.1 ID=prot_H-elongata_contig66134.14206.1|Name=mRNA_H-elongata_contig66134.14206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
QEHENRFWTTVVFCFSGALVFVHDSPVALGQWSPTLGFVCVTLFTYTVHS
LDRQFHRSHIGRAPNFRS
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mRNA from alignment at H-elongata_contig66134:1699..2291+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66134.14206.1 ID=mRNA_H-elongata_contig66134.14206.1|Name=mRNA_H-elongata_contig66134.14206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=593bp|location=Sequence derived from alignment at H-elongata_contig66134:1699..2291+ (Himanthalia elongata Himel1 dioecious)
CAGGAACACGAGAACCGTTTCTGGACAACTGTGGTGTTCTGCTTCTCCGG GGCGCTGGTGTTCGTCCACGACAGTCCTGTGGCCCTTGGGCAGTGGTCGC CGACCTTGGGCTTCGTGTGCGTCACGCTGTTCACCTACACGGTGCACAGC CTCGACCGACAGGTGTGTACCGTCAGGCATTCACAAGGAGAGACGCGAAC ATATCCCCTCCTCCCCCCTTCGAGTTAGCCTACTGCACATTATGCTTCTG AGGCTAACTTTAATTAATATATTATGCTCGAGTCGTGTCTGGCCGTGGAA CGCTGGCGCTAAAGGCTGCGAGCTACACCGTCTCTCTCTCCCCCTGAAGA TTGGGTCGAACGAGCGATCGATACTCACCCGTGGTTGGGTTAGGCTTCAC CGATCGATCGATCGATTCCGCTATGGCAGGTTTCGTGTGCACATTTTTTC TACCCTCGTCCAAAATACTCCACGCCCATTTGAACATTGCATCGCGTGTC GTCCGCCCGCTGCCCACCCCTCCCCCCCCCTCCCCCGATGCTGTCCTTTA GTTCCATCGTTCGCACATAGGGCGCGCCCCGAACTTCCGTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig66134:1699..2291+

>mRNA_H-elongata_contig66134.14206.1 ID=mRNA_H-elongata_contig66134.14206.1|Name=mRNA_H-elongata_contig66134.14206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig66134:1699..2291+ (Himanthalia elongata Himel1 dioecious)
CAGGAACACGAGAACCGTTTCTGGACAACTGTGGTGTTCTGCTTCTCCGG
GGCGCTGGTGTTCGTCCACGACAGTCCTGTGGCCCTTGGGCAGTGGTCGC
CGACCTTGGGCTTCGTGTGCGTCACGCTGTTCACCTACACGGTGCACAGC
CTCGACCGACAGCAGGAACACGAGAACCGTTTCTGGACAACTGTGGTGTT
CTGCTTCTCCGGGGCGCTGGTGTTCGTCCACGACAGTCCTGTGGCCCTTG
GGCAGTGGTCGCCGACCTTGGGCTTCGTGTGCGTCACGCTGTTCACCTAC
ACGGTGCACAGCCTCGACCGACAGTTCCATCGTTCGCACATAGGGCGCGC
CCCGAACTTCCGTTCGTTCCATCGTTCGCACATAGGGCGCGCCCCGAACT
TCCGTTCG
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