mRNA_H-elongata_contig66118.14204.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66118.14204.1
Unique NamemRNA_H-elongata_contig66118.14204.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66118.14204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66118contigH-elongata_contig66118:188..912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size448
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66118.14204.1prot_H-elongata_contig66118.14204.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66118 357..912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.0287375-UTR-H-elongata_contig66118:187..3561622931050.0287375-UTR-H-elongata_contig66118:187..356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66118 188..356 +
1691679677.4281726-UTR-H-elongata_contig66118:187..3561691679677.4281726-UTR-H-elongata_contig66118:187..356Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66118 188..356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.0508018-CDS-H-elongata_contig66118:356..4971622931050.0508018-CDS-H-elongata_contig66118:356..497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66118 357..497 +
1691679677.4412317-CDS-H-elongata_contig66118:356..4971691679677.4412317-CDS-H-elongata_contig66118:356..497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66118 357..497 +
1622931050.0642126-CDS-H-elongata_contig66118:774..9121622931050.0642126-CDS-H-elongata_contig66118:774..912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66118 775..912 +
1691679677.4590535-CDS-H-elongata_contig66118:774..9121691679677.4590535-CDS-H-elongata_contig66118:774..912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66118 775..912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66118.14204.1

>prot_H-elongata_contig66118.14204.1 ID=prot_H-elongata_contig66118.14204.1|Name=mRNA_H-elongata_contig66118.14204.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MPDATSPQEHQDAVATLTSTAMEASARAVGGADRSSSAADAAGYALKEKL
AVVSGTIGDSADACEKDAEAVHRDANEAAKRISTLACTVEQEA
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mRNA from alignment at H-elongata_contig66118:188..912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66118.14204.1 ID=mRNA_H-elongata_contig66118.14204.1|Name=mRNA_H-elongata_contig66118.14204.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=725bp|location=Sequence derived from alignment at H-elongata_contig66118:188..912+ (Himanthalia elongata Himel1 dioecious)
ACGACTCTTTGAGCACTTGGGTCGTCACCATTGTAGCTGCTGTTCTGCGC
GCTGCACCATCCACAAGGCAAGGATAGAGTTATAGCGCCAGCAGCGTCTT
TCACAAAGGAGGAAACATTGCAACTCAGACTGATTTCCCACCTCTGGACT
TTGCGATTCTATCACACCCATGCCCGACGCAACGTCCCCTCAGGAGCACC
AGGATGCGGTAGCAACCCTTACGTCGACGGCCATGGAAGCGTCAGCGAGG
GCGGTGGGTGGGGCGGACCGGTCATCCAGCGCGGCCGATGCGGCGGGCTA
TGCTCTCAAGGCAAGTCGTCTCTCTCTGCTGTCTCTAATGGTCTCTGTAT
CTCTCTGTAACTGTCCATCCATTCATATATGTCTAGCCAGTCATCTAGTA
AAAGATACTAGTATACCAATATTATAGGTAAAGTCGTTTGTCGAAACCCT
CGCACGGCTCCATTTTCCTCCCGTCTCCCTTACACTGTAGCCCTGATCTT
CGCTCTGCCTTACACTGTCGAGCCTCCCCCTTCCAACGCTGTACAAACTC
ACGAACGTCACGTCACGTCTTCCCTTGGCCGCCGCAGGAAAAACTCGCAG
TGGTGTCGGGGACAATAGGCGACTCGGCCGACGCCTGCGAAAAAGATGCC
GAGGCGGTGCACAGAGACGCAAACGAGGCCGCCAAACGCATCTCGACCTT
GGCCTGCACGGTAGAACAAGAAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig66118:188..912+

>mRNA_H-elongata_contig66118.14204.1 ID=mRNA_H-elongata_contig66118.14204.1|Name=mRNA_H-elongata_contig66118.14204.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig66118:188..912+ (Himanthalia elongata Himel1 dioecious)
ATGCCCGACGCAACGTCCCCTCAGGAGCACCAGGATGCGGTAGCAACCCT
TACGTCGACGGCCATGGAAGCGTCAGCGAGGGCGGTGGGTGGGGCGGACC
GGTCATCCAGCGCGGCCGATGCGGCGGGCTATGCTCTCAAGATGCCCGAC
GCAACGTCCCCTCAGGAGCACCAGGATGCGGTAGCAACCCTTACGTCGAC
GGCCATGGAAGCGTCAGCGAGGGCGGTGGGTGGGGCGGACCGGTCATCCA
GCGCGGCCGATGCGGCGGGCTATGCTCTCAAGGAAAAACTCGCAGTGGTG
TCGGGGACAATAGGCGACTCGGCCGACGCCTGCGAAAAAGATGCCGAGGC
GGTGCACAGAGACGCAAACGAGGCCGCCAAACGCATCTCGACCTTGGCCT
GCACGGTAGAACAAGAAGCAGAAAAACTCGCAGTGGTGTCGGGGACAATA
GGCGACTCGGCCGACGCCTGCGAAAAAGATGCCGAGGCGGTGCACAGAGA
CGCAAACGAGGCCGCCAAACGCATCTCGACCTTGGCCTGCACGGTAGAAC
AAGAAGCA
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