mRNA_H-elongata_contig6607.14198.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6607.14198.1
Unique NamemRNA_H-elongata_contig6607.14198.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6607.14198.1 vs. uniprot
Match: D8LEM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM5_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 4.490e-14
Identity = 140/400 (35.00%), Postives = 167/400 (41.75%), Query Frame = 1 
Query:    1 DRWGRQRGGRKARWDKLDRQPSALKSRLRSANS----------------VREDVHLEA-EDTLVF-------SAFSTRGGRGIYGLXXXXXXXXXXXXXXXXXQNDEDHGARDLAFARVSLDRDDTTGVHHEGGD----------PHTSFP--KPYQHQQEKKQQLEEVHGTLSQESSVETDGGVGWGHGRGHHHASDA-AKTPEPPSLAWDVG------QCAIGQNAWIKANGGLPASRGSGGGGNARLSSLKSPAGGGGGLSRSGL-----------GSFRGVTSPPLHRRLSAPAAAGVGXXXGVGAASPLERRGKGLNQRYASPAAHKRGGSQGADLARLRASKSW-DAGSGSRDGDDXXXXXXXXXXXXSLFETVFKDKLPSLTPKKTPQVSTPR 1035
            DRWGRQRGGRKARWDK DRQPSA KSRLRS N                 V ED  L+A E+   F       +A +      + G                   +D   G    + A V   R   TG    GGD           HT  P  +  Q                +   +V   GG             DA A +P P + A  V         A G         G+  SR    G   R SSL+SP    GGLSR+G            GS+RG + PPLHRRLS+PA  G G               KG  QR    +     G++G   A+ +   S  DAG   R  + XXXXXXXXXXXXSLFE+VFKDKLPSLTP+K P  +TPR
Sbjct:   36 DRWGRQRGGRKARWDKWDRQPSAFKSRLRSGNFAAAAAGXXGVGLGGGVVDEDAVLDAAEEAFAFVDAATMKAAAAATAANAVLGSEGTSSDEGVGGGAGAEGDSDAATGVPACSVAVVDGGR--VTG----GGDVPPEAAAGDGAHTPSPTRRALQRXXXXXXXXXXXXPAATAAPAVLDAGGC----------TDDAVAASPAPATTATVVSTPSSARSIANGVXXXXXXXXGVSGSRSKTVGSGGRRSSLRSP----GGLSRAGSKGSGVGGGLGSGSYRG-SPPPLHRRLSSPAGVGSGK--------------KGQRQRQVGGSTAVGVGARGLGSAKKKKQASGSDAGRQGR-AEXXXXXXXXXXXXXSLFESVFKDKLPSLTPRKAPP-ATPR 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6607.14198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEM5_ECTSI4.490e-1435.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6607contigH-elongata_contig6607:2064..3107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue7.5e-16
Seed eggNOG ortholog2880.D8LEM5
EggNOG free text desc.Protein phosphatase 2A regulatory B subunit (B56 family)
EggNOG OGs28KUT@1,2QWGD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-23_002450.1
Exons1
Model size1044
Cds size1044
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.607959-CDS-H-elongata_contig6607:2063..31071622931049.607959-CDS-H-elongata_contig6607:2063..3107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6607 2064..3107 +
1691679677.2791634-CDS-H-elongata_contig6607:2063..31071691679677.2791634-CDS-H-elongata_contig6607:2063..3107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6607 2064..3107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6607.14198.1prot_H-elongata_contig6607.14198.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6607 2064..3107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6607.14198.1

>prot_H-elongata_contig6607.14198.1 ID=prot_H-elongata_contig6607.14198.1|Name=mRNA_H-elongata_contig6607.14198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=348bp
DRWGRQRGGRKARWDKLDRQPSALKSRLRSANSVREDVHLEAEDTLVFSA
FSTRGGRGIYGLGVTGVGSDDTDGDDGDNQNDEDHGARDLAFARVSLDRD
DTTGVHHEGGDPHTSFPKPYQHQQEKKQQLEEVHGTLSQESSVETDGGVG
WGHGRGHHHASDAAKTPEPPSLAWDVGQCAIGQNAWIKANGGLPASRGSG
GGGNARLSSLKSPAGGGGGLSRSGLGSFRGVTSPPLHRRLSAPAAAGVGG
GGGVGAASPLERRGKGLNQRYASPAAHKRGGSQGADLARLRASKSWDAGS
GSRDGDDDEMARTTPPPPPSLFETVFKDKLPSLTPKKTPQVSTPRQG*
back to top

mRNA from alignment at H-elongata_contig6607:2064..3107+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6607.14198.1 ID=mRNA_H-elongata_contig6607.14198.1|Name=mRNA_H-elongata_contig6607.14198.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-elongata_contig6607:2064..3107+ (Himanthalia elongata Himel1 dioecious)
GATCGATGGGGTAGACAGCGAGGCGGCAGAAAGGCCAGGTGGGACAAGCT
CGACAGACAGCCCTCCGCCCTCAAGAGCAGGCTCCGGTCGGCGAACTCCG
TGCGCGAAGACGTCCACTTGGAGGCGGAAGACACGCTGGTGTTTTCTGCT
TTTTCGACAAGAGGTGGGCGCGGAATATACGGCCTAGGAGTCACAGGCGT
TGGCAGCGACGACACTGATGGGGATGACGGTGACAATCAAAACGACGAGG
ATCACGGCGCCAGGGATCTCGCGTTCGCCAGAGTCAGTCTCGACCGGGAT
GACACGACAGGCGTTCACCACGAGGGCGGGGATCCTCATACCTCGTTCCC
GAAGCCATATCAGCACCAGCAGGAGAAAAAACAACAGCTAGAAGAAGTGC
ACGGCACCCTTTCCCAAGAATCATCCGTCGAGACTGATGGCGGCGTCGGC
TGGGGTCACGGTCGTGGTCATCATCACGCCTCTGATGCAGCAAAAACTCC
AGAGCCGCCGAGCTTAGCGTGGGACGTGGGCCAATGCGCCATCGGACAAA
ACGCGTGGATCAAGGCTAATGGTGGCCTCCCTGCGTCGCGCGGCAGTGGC
GGCGGCGGCAACGCCCGTCTATCTTCCCTGAAATCACCGGCTGGGGGTGG
CGGTGGCCTCTCGCGCTCGGGCCTCGGGAGCTTTCGGGGGGTGACGTCCC
CGCCTCTGCACCGTCGACTGAGTGCCCCAGCGGCAGCGGGGGTGGGGGGA
GGCGGTGGCGTTGGCGCCGCGTCCCCCCTCGAACGGCGCGGCAAGGGCCT
GAACCAAAGATATGCTTCCCCTGCGGCACACAAGAGAGGGGGATCGCAGG
GCGCCGATCTAGCGCGGTTGCGCGCTTCGAAGTCTTGGGACGCCGGGTCT
GGGTCGAGGGACGGTGATGATGACGAGATGGCGCGCACGACACCACCCCC
GCCCCCGAGCCTGTTCGAGACCGTATTCAAGGACAAGCTGCCGAGCCTAA
CCCCAAAGAAGACTCCGCAGGTCTCTACTCCCAGGCAAGGATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig6607:2064..3107+

>mRNA_H-elongata_contig6607.14198.1 ID=mRNA_H-elongata_contig6607.14198.1|Name=mRNA_H-elongata_contig6607.14198.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2088bp|location=Sequence derived from alignment at H-elongata_contig6607:2064..3107+ (Himanthalia elongata Himel1 dioecious)
GATCGATGGGGTAGACAGCGAGGCGGCAGAAAGGCCAGGTGGGACAAGCT
CGACAGACAGCCCTCCGCCCTCAAGAGCAGGCTCCGGTCGGCGAACTCCG
TGCGCGAAGACGTCCACTTGGAGGCGGAAGACACGCTGGTGTTTTCTGCT
TTTTCGACAAGAGGTGGGCGCGGAATATACGGCCTAGGAGTCACAGGCGT
TGGCAGCGACGACACTGATGGGGATGACGGTGACAATCAAAACGACGAGG
ATCACGGCGCCAGGGATCTCGCGTTCGCCAGAGTCAGTCTCGACCGGGAT
GACACGACAGGCGTTCACCACGAGGGCGGGGATCCTCATACCTCGTTCCC
GAAGCCATATCAGCACCAGCAGGAGAAAAAACAACAGCTAGAAGAAGTGC
ACGGCACCCTTTCCCAAGAATCATCCGTCGAGACTGATGGCGGCGTCGGC
TGGGGTCACGGTCGTGGTCATCATCACGCCTCTGATGCAGCAAAAACTCC
AGAGCCGCCGAGCTTAGCGTGGGACGTGGGCCAATGCGCCATCGGACAAA
ACGCGTGGATCAAGGCTAATGGTGGCCTCCCTGCGTCGCGCGGCAGTGGC
GGCGGCGGCAACGCCCGTCTATCTTCCCTGAAATCACCGGCTGGGGGTGG
CGGTGGCCTCTCGCGCTCGGGCCTCGGGAGCTTTCGGGGGGTGACGTCCC
CGCCTCTGCACCGTCGACTGAGTGCCCCAGCGGCAGCGGGGGTGGGGGGA
GGCGGTGGCGTTGGCGCCGCGTCCCCCCTCGAACGGCGCGGCAAGGGCCT
GAACCAAAGATATGCTTCCCCTGCGGCACACAAGAGAGGGGGATCGCAGG
GCGCCGATCTAGCGCGGTTGCGCGCTTCGAAGTCTTGGGACGCCGGGTCT
GGGTCGAGGGACGGTGATGATGACGAGATGGCGCGCACGACACCACCCCC
GCCCCCGAGCCTGTTCGAGACCGTATTCAAGGACAAGCTGCCGAGCCTAA
CCCCAAAGAAGACTCCGCAGGTCTCTACTCCCAGGCAAGGATAAGATCGA
TGGGGTAGACAGCGAGGCGGCAGAAAGGCCAGGTGGGACAAGCTCGACAG
ACAGCCCTCCGCCCTCAAGAGCAGGCTCCGGTCGGCGAACTCCGTGCGCG
AAGACGTCCACTTGGAGGCGGAAGACACGCTGGTGTTTTCTGCTTTTTCG
ACAAGAGGTGGGCGCGGAATATACGGCCTAGGAGTCACAGGCGTTGGCAG
CGACGACACTGATGGGGATGACGGTGACAATCAAAACGACGAGGATCACG
GCGCCAGGGATCTCGCGTTCGCCAGAGTCAGTCTCGACCGGGATGACACG
ACAGGCGTTCACCACGAGGGCGGGGATCCTCATACCTCGTTCCCGAAGCC
ATATCAGCACCAGCAGGAGAAAAAACAACAGCTAGAAGAAGTGCACGGCA
CCCTTTCCCAAGAATCATCCGTCGAGACTGATGGCGGCGTCGGCTGGGGT
CACGGTCGTGGTCATCATCACGCCTCTGATGCAGCAAAAACTCCAGAGCC
GCCGAGCTTAGCGTGGGACGTGGGCCAATGCGCCATCGGACAAAACGCGT
GGATCAAGGCTAATGGTGGCCTCCCTGCGTCGCGCGGCAGTGGCGGCGGC
GGCAACGCCCGTCTATCTTCCCTGAAATCACCGGCTGGGGGTGGCGGTGG
CCTCTCGCGCTCGGGCCTCGGGAGCTTTCGGGGGGTGACGTCCCCGCCTC
TGCACCGTCGACTGAGTGCCCCAGCGGCAGCGGGGGTGGGGGGAGGCGGT
GGCGTTGGCGCCGCGTCCCCCCTCGAACGGCGCGGCAAGGGCCTGAACCA
AAGATATGCTTCCCCTGCGGCACACAAGAGAGGGGGATCGCAGGGCGCCG
ATCTAGCGCGGTTGCGCGCTTCGAAGTCTTGGGACGCCGGGTCTGGGTCG
AGGGACGGTGATGATGACGAGATGGCGCGCACGACACCACCCCCGCCCCC
GAGCCTGTTCGAGACCGTATTCAAGGACAAGCTGCCGAGCCTAACCCCAA
AGAAGACTCCGCAGGTCTCTACTCCCAGGCAAGGATAA
back to top