mRNA_H-elongata_contig66066.14197.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66066.14197.1
Unique NamemRNA_H-elongata_contig66066.14197.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: A0A813ZQY9_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813ZQY9_9BILA)

HSP 1 Score: 96.7 bits (239), Expect = 6.590e-22
Identity = 47/111 (42.34%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:   28 LAVLFDTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAKGSHFCPDELLHLFALGTDNVEQEFAVVRTLTHARFCDAKELAQRVSHASQLNE 360
            L++  + K ++S QL  L+CLSH+L+Y+FRK+KT +I   LYHDL +T++ A+++ A        + L+L+ LGTD +E  F+ VRTLTH+R CD  EL  R+  + Q+ +
Sbjct:   34 LSIFVNPKLSLSIQLSNLACLSHLLLYVFRKHKTKYITNDLYHDLQSTVQDAFISTAIYQKKFSQKPLYLYQLGTDQLESLFSSVRTLTHSRNCDILELLDRLKISLQIEK 144
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BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.300e-21
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:   13 ICKPLLAVLFDTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAKGSHFCPDELLHLFALGTDNVEQEFAVVRTLTHARFCDAKELAQR 333
            I +PLL VL ++++ IS  L+GL+ ++ +L++++R  KT F PG L HDL ATIR  +  V +    CP E L+L+ +GTD +E  FA+VRTLTHA   DAKE  +R
Sbjct:   38 ITEPLLDVLLNSEEKISELLRGLARVAFLLLFVYRMKKTRFKPGQLDHDLQATIRLLFYVVLEAQVRCPRERLYLWMIGTDGLENLFAIVRTLTHASNVDAKEAIER 144
[Close]
BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: A0A4S8KRI5_DENBC (Uncharacterized protein (Fragment) n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8KRI5_DENBC)

HSP 1 Score: 66.2 bits (160), Expect = 2.120e-10
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    1 LVGVICKPLLAVLFDTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAKGSHFCPDELLHLFALGTDNVEQEFAVVRTLT 294
            ++GV  K LL        +++ QLQ LS  +H+ + LFR+ + +F+P  L+ D++  I+  Y  VA      P+  L++  LGTD +E +F +VRT+T
Sbjct:  133 ILGVFLKSLLFPYICVDLSLAEQLQHLSMAAHLGLVLFREAEKDFLPSLLFADIMMMIKNVYFCVAYAKVDNPNSSLYIILLGTDRLESQFGIVRTMT 230
[Close]
BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: A0A4S8KRS1_DENBC (Uncharacterized protein (Fragment) n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8KRS1_DENBC)

HSP 1 Score: 66.2 bits (160), Expect = 3.060e-10
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:    1 LVGVICKPLLAVLFDTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAKGSHFCPDELLHLFALGTDNVEQEFAVVRTLT 294
            ++GV  K LL        +++ QLQ LS  +H+ + LFR+ + +F+P  L+ D++  I+  Y  VA      P+  L++  LGTD +E +F +VRT+T
Sbjct:  431 ILGVFLKSLLFPYICVDLSLAEQLQHLSMAAHLGLVLFREAEKDFLPSLLFADIMMMIKNVYFCVAYAKVDNPNSSLYIILLGTDRLESQFGIVRTMT 528
[Close]
BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: A0A4S8KJL7_DENBC (Uncharacterized protein (Fragment) n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8KJL7_DENBC)

HSP 1 Score: 65.5 bits (158), Expect = 5.500e-10
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 LVGVICKPLLAVLFDTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAKGSHFCPDELLHLFALGTDNVEQEFAVVRTLT 294
            ++GV  K LL        +++ QLQ LS  +H+ + LFR  + +F+P  L+ D++  I+  Y  VA      P+  L++  LGTD +E +F +VRT+T
Sbjct:  265 ILGVFLKSLLFPYICVDLSLAEQLQHLSMAAHLGLVLFRAAEKDFLPSLLFTDIMMMIKNVYFCVAYAKVDNPNSSLYIILLGTDRLESQFGIVRTMT 362
[Close]
BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: A0A166QAC3_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166QAC3_9AGAM)

HSP 1 Score: 64.7 bits (156), Expect = 1.060e-9
Identity = 33/104 (31.73%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:   43 DTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAKGSHFCPDELLHLFALGTDNVEQEFAVVRTLTHARFCDAKELAQRVSHASQL 354
            D + ++S QL  LS   H+L+ L+R+N+T+F PG  Y+D  + I+  +  VAK     P     +   G+D +E  F   RT  H    D  +L  R S  +++
Sbjct:  493 DPEMSLSDQLTSLSAAGHMLLVLYRRNRTSFCPGQFYYDTQSFIKATFWNVAKQKLLHPAGQFFIIQGGSDRLEGSFGEYRTADHCHNIDLLQLQHRSSQIAEV 596
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BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: B0DNC9_LACBS (Predicted protein n=1 Tax=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) TaxID=486041 RepID=B0DNC9_LACBS)

HSP 1 Score: 64.3 bits (155), Expect = 1.520e-9
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1 
Query:   25 LLAVLFDTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAKGSHFCPDELLHLFALGTDNVEQEFAVVRTLT-HARFCDAKELAQRVSHA 345
            LL    DT  ++ +QL  LSC++H+++ L+ ++K +FIP   Y +L+A I+ AY  VAK     P     L  LGTD +E+ F  V+++  +    D  +LA R+  A
Sbjct:  604 LLNAYLDTSLSLHQQLVHLSCVTHLVLTLYNRDKGDFIPVQSYFNLMAMIKNAYFCVAKAQCDNPSGKFFLILLGTDGLEKIFGKVQSMVGNDTNADVLQLANRIDGA 711
[Close]
BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: A0A8H6HU96_9AGAR (Uncharacterized protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H6HU96_9AGAR)

HSP 1 Score: 62.4 bits (150), Expect = 7.310e-9
Identity = 31/97 (31.96%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:    1 LVGVICKPLLAVLFDTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAKGSHFCPDELLHLFALGTDNVEQEFAVVRTL 291
            ++G + + ++      + N+S QL+ LS  +H+L  L++    +FIP  LY D++  I+  +  VAK     PD    +  LGTD +E +F V+RT+
Sbjct:  999 ILGKLMRHIVIAYLGVELNLSEQLEHLSAAAHLLFVLYKVGGKSFIPTLLYIDIIIMIKNVFFCVAKAKADNPDSAFFIIHLGTDRLEIQFGVLRTV 1095
[Close]
BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: A0A6H5KA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA62_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.670e-7
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   13 ICKPLLAVLFDTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAK 201
            I +PLL VL   ++ IS  L+ L+ ++ +L++++R NKT FIP  LYHDL ATIR  +  V K
Sbjct:  275 ITEPLLDVLLTPEKTISELLRELARVAFLLLFVYRMNKTRFIPDQLYHDLQATIRVLFYVVLK 337
[Close]
BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Match: A0A409YJG1_9AGAR (PHD domain-containing protein n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409YJG1_9AGAR)

HSP 1 Score: 57.8 bits (138), Expect = 3.010e-7
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:   55 NISRQLQGLSCLSHVLIYLFRKNKTNFIPG*LYHDLLATIRCAYVTVAKGSHFCPDELLHLFALGTDNVEQEFAVVRTL 291
            ++  QL+ LS  +H+L+ L+R+    FIP  LY D++  I+  +  VAK     P     L  LGTD +E +F ++RT+
Sbjct:  829 SLGEQLEHLSAAAHLLLTLYRREGNKFIPTLLYVDIMIMIKNVFFCVAKAKVDTPHGRFFLILLGTDRLEIQFGILRTM 907
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66066.14197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A813ZQY9_9BILA6.590e-2242.34Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A6H5L2E6_9PHAE3.300e-2146.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4S8KRI5_DENBC2.120e-1034.69Uncharacterized protein (Fragment) n=1 Tax=Dendrot... [more]
A0A4S8KRS1_DENBC3.060e-1034.69Uncharacterized protein (Fragment) n=1 Tax=Dendrot... [more]
A0A4S8KJL7_DENBC5.500e-1034.69Uncharacterized protein (Fragment) n=1 Tax=Dendrot... [more]
A0A166QAC3_9AGAM1.060e-931.73Uncharacterized protein (Fragment) n=1 Tax=Fibular... [more]
B0DNC9_LACBS1.520e-935.19Predicted protein n=1 Tax=Laccaria bicolor (strain... [more]
A0A8H6HU96_9AGAR7.310e-931.96Uncharacterized protein n=1 Tax=Tulosesus angulatu... [more]
A0A6H5KA62_9PHAE2.670e-746.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A409YJG1_9AGAR3.010e-735.44PHD domain-containing protein n=1 Tax=Panaeolus cy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66066contigH-elongata_contig66066:1702..2061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size360
Cds size147
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.5497556-UTR-H-elongata_contig66066:1701..19141622931049.5497556-UTR-H-elongata_contig66066:1701..1914Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66066 1702..1914 -
1691679677.2544858-UTR-H-elongata_contig66066:1701..19141691679677.2544858-UTR-H-elongata_contig66066:1701..1914Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66066 1702..1914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931049.5678694-CDS-H-elongata_contig66066:1914..20611622931049.5678694-CDS-H-elongata_contig66066:1914..2061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66066 1915..2061 -
1691679677.2691348-CDS-H-elongata_contig66066:1914..20611691679677.2691348-CDS-H-elongata_contig66066:1914..2061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66066 1915..2061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66066.14197.1prot_H-elongata_contig66066.14197.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66066 1915..2061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66066.14197.1

>prot_H-elongata_contig66066.14197.1 ID=prot_H-elongata_contig66066.14197.1|Name=mRNA_H-elongata_contig66066.14197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
LVGVICKPLLAVLFDTKQNISRQLQGLSCLSHVLIYLFRKNKTNFIPG*
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mRNA from alignment at H-elongata_contig66066:1702..2061-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66066.14197.1 ID=mRNA_H-elongata_contig66066.14197.1|Name=mRNA_H-elongata_contig66066.14197.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig66066:1702..2061- (Himanthalia elongata Himel1 dioecious)
TTGGTTGGAGTTATCTGCAAGCCTCTGCTGGCCGTCTTGTTCGACACAAA
ACAAAACATTTCACGGCAGCTTCAGGGACTATCCTGCCTGTCACATGTCC
TCATCTACCTCTTTCGCAAGAACAAGACCAATTTCATCCCTGGTTAGCTC
TATCACGATCTCCTGGCCACCATTCGCTGCGCGTATGTGACTGTAGCCAA
AGGCAGTCACTTCTGCCCAGACGAGCTGTTGCACCTTTTCGCTCTAGGCA
CGGACAATGTCGAGCAGGAATTTGCCGTAGTTCGTACCCTTACTCACGCG
CGTTTCTGCGATGCGAAGGAACTCGCCCAGCGTGTTTCACACGCTTCCCA
GCTGAATGAA
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Coding sequence (CDS) from alignment at H-elongata_contig66066:1702..2061-

>mRNA_H-elongata_contig66066.14197.1 ID=mRNA_H-elongata_contig66066.14197.1|Name=mRNA_H-elongata_contig66066.14197.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig66066:1702..2061- (Himanthalia elongata Himel1 dioecious)
TTGGTTGGAGTTATCTGCAAGCCTCTGCTGGCCGTCTTGTTCGACACAAA
ACAAAACATTTCACGGCAGCTTCAGGGACTATCCTGCCTGTCACATGTCC
TCATCTACCTCTTTCGCAAGAACAAGACCAATTTCATCCCTGGTTAGTTG
GTTGGAGTTATCTGCAAGCCTCTGCTGGCCGTCTTGTTCGACACAAAACA
AAACATTTCACGGCAGCTTCAGGGACTATCCTGCCTGTCACATGTCCTCA
TCTACCTCTTTCGCAAGAACAAGACCAATTTCATCCCTGGTTAG
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