mRNA_H-elongata_contig6604.14195.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR) HSP 1 Score: 75.1 bits (183), Expect = 1.340e-13 Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 10 LPYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEVF 309
+P EVL+R D + + + L +AG VARM D+RLP +++ GE+ GKR +G KR + + AF I+P W AAQD +W ++ GA+ +
Sbjct: 812 VPDTEVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDKIKWRSAIKNGAQSY 911
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT) HSP 1 Score: 74.7 bits (182), Expect = 1.600e-13 Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 1
Query: 13 PYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEVF 309
P+ EVL R C VE+ + KR L +AG + RM D+RLP I++ GE+ G R G+P KR + + + + + + W A+D W + TG + F
Sbjct: 275 PHSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF 373
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT) HSP 1 Score: 74.7 bits (182), Expect = 1.800e-13 Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 1
Query: 13 PYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEVF 309
P+ EVL R C VE+ + KR L +AG + RM D+RLP I++ GE+ G R G+P KR + + + + + + W A+D W + TG + F
Sbjct: 561 PHSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF 659
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT) HSP 1 Score: 72.8 bits (177), Expect = 4.680e-13 Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 13 PYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEVF 309
P+ EVL R C VE+ + KR L +AG + RM D+RLP I++ GE+ G R G+P KR + + + + + + W A+D W + TG +
Sbjct: 208 PHSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGGSMI 306
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A8J9Z756_BRALA (Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z756_BRALA) HSP 1 Score: 62.8 bits (151), Expect = 1.290e-9 Identity = 32/99 (32.32%), Postives = 48/99 (48.48%), Query Frame = 1
Query: 10 LPYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEHRVTEYCTAFGIDPKCWMRAAQDAPEWHRKVETGAEV 306
+P EVL R + V + K +AG V RM D R+P +++ GE+ GKR G+P R + + + I W A D P+W V GA++
Sbjct: 89 IPDTEVLTRANMLSVHTLLEKARARWAGHVRRMDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPMDSWEVIAADRPQWRGAVHQGAQL 187
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT) HSP 1 Score: 59.3 bits (142), Expect = 4.390e-8 Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 13 PYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGGKRKRGQPAKRLEH 198
P+ EVL R C +E+ + KR L +AG + RM D+RLP I++ GE+ G R G+P KR H
Sbjct: 291 PHSEVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRTSH 352 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6604.14195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6604.14195.1 >prot_H-elongata_contig6604.14195.1 ID=prot_H-elongata_contig6604.14195.1|Name=mRNA_H-elongata_contig6604.14195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp MLPYLEVLLRTDCECVEAAVMKRILHYAGRVARMYDDRLPNIIMRGEMVGback to top mRNA from alignment at H-elongata_contig6604:168..476+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6604.14195.1 ID=mRNA_H-elongata_contig6604.14195.1|Name=mRNA_H-elongata_contig6604.14195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig6604:168..476+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6604:168..476+ >mRNA_H-elongata_contig6604.14195.1 ID=mRNA_H-elongata_contig6604.14195.1|Name=mRNA_H-elongata_contig6604.14195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig6604:168..476+ (Himanthalia elongata Himel1 dioecious)back to top |