mRNA_H-elongata_contig66019.14191.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66019.14191.1
Unique NamemRNA_H-elongata_contig66019.14191.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: A0A6H5KXN5_9PHAE (CoA carboxyltransferase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN5_9PHAE)

HSP 1 Score: 425 bits (1092), Expect = 2.130e-149
Identity = 208/232 (89.66%), Postives = 221/232 (95.26%), Query Frame = 1
Query:   25 QVIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM 720
            +VIARLVDGSRFHEFKERYGTT+VTGFGHLYGQSVGIVANNGVLFSES+LKAAHFVELCCQRGIP++FLQNITGFMVGKRYEHQGIAKDGAKLV AV+CAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAA VLAQV EKDKR  RGETLG E+EA I +P+L KFERESSPY+SS+RLWDDGVIDPADTR+VLGL+L VATK AAPRTSFGVFRM
Sbjct:   17 KVIARLVDGSRFHEFKERYGTTVVTGFGHLYGQSVGIVANNGVLFSESALKAAHFVELCCQRGIPIIFLQNITGFMVGKRYEHQGIAKDGAKLVAAVSCAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAANVLAQV-EKDKRQRRGETLGEEEEAKIKDPILNKFERESSPYYSSSRLWDDGVIDPADTRKVLGLTLHVATKDAAPRTSFGVFRM 247          
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: D7G8N5_ECTSI (Methylcrotonoyl-CoA carboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N5_ECTSI)

HSP 1 Score: 419 bits (1077), Expect = 2.300e-142
Identity = 206/232 (88.79%), Postives = 219/232 (94.40%), Query Frame = 1
Query:   25 QVIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM 720
            +VIARLVDGSRFHEFKERYGTT+VTGFGHLYGQSVGIVANNGVLFSES+LKAAHFVELCCQRGIP++FLQNITGFMVGKRYEHQGIAKDGAKLV AV+CAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAA VLAQV EKDKR   GETLG E+EA I +P+L KFERESSPY+SS+RLWDDGVIDPADTR+VLGL+L VATK AAP TSFGVFRM
Sbjct:  340 KVIARLVDGSRFHEFKERYGTTMVTGFGHLYGQSVGIVANNGVLFSESALKAAHFVELCCQRGIPIIFLQNITGFMVGKRYEHQGIAKDGAKLVAAVSCAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAANVLAQV-EKDKRERSGETLGEEEEAKIKDPILNKFERESSPYYSSSRLWDDGVIDPADTRKVLGLTLHVATKDAAPPTSFGVFRM 570          
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: A0A835Z7I2_9STRA (Methylcrotonoyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I2_9STRA)

HSP 1 Score: 359 bits (921), Expect = 1.740e-119
Identity = 177/232 (76.29%), Postives = 200/232 (86.21%), Query Frame = 1
Query:   25 QVIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM 720
            +V+AR++DGSRF EFK R+GTTIVTGFGHLYGQ VGIVANNGVLFSES+LKAAHFVELCCQRG+PL+FLQNITGFMVG+++E++GIAK GAK+VTAVACAKVPKITCVIGGSYGAGNYGMCGR+ SPRFLFMWPNARI VMG EQAA VL QV EKDKRAA+G  L  E+EA +  PLL +   ESS Y+SSARLWDDGVIDP DTRRVLG+S+  A +     T FGVFRM
Sbjct:  287 KVLARVLDGSRFSEFKARFGTTIVTGFGHLYGQQVGIVANNGVLFSESALKAAHFVELCCQRGVPLVFLQNITGFMVGRKHENEGIAKHGAKMVTAVACAKVPKITCVIGGSYGAGNYGMCGRSMSPRFLFMWPNARIGVMGAEQAANVLTQV-EKDKRAAKGLALSPEEEAAMKAPLLSRLGAESSAYYSSARLWDDGVIDPRDTRRVLGMSVAAAMQAPPEPTKFGVFRM 517          
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: A0A7S2BWJ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWJ0_9STRA)

HSP 1 Score: 345 bits (886), Expect = 8.470e-118
Identity = 168/231 (72.73%), Postives = 193/231 (83.55%), Query Frame = 1
Query:   28 VIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM 720
            VIAR+VDGSRFHEFK +YGTT+VTGF  +YGQ VGI+ANNG+LFSESSLKAAHF+ELCCQRG+PLLFLQNITGFMVG++YE++GIAK+GAKLVTAV+CA VPKIT +IGGSYGAGNYGMCGRA+SPRFLFMWPN+RISVMGGEQAA VLA  V  D    RGE    E EA    P+L K+E ESS Y+SSARLWDDGVI+P  TR  LGL+   A ++ +P T FGVFRM
Sbjct:   33 VIARIVDGSRFHEFKAQYGTTMVTGFAEIYGQRVGIIANNGILFSESSLKAAHFIELCCQRGVPLLFLQNITGFMVGQKYENEGIAKNGAKLVTAVSCASVPKITVIIGGSYGAGNYGMCGRAFSPRFLFMWPNSRISVMGGEQAAGVLA-TVHGDNLERRGEEFTAEAEAEFKAPILAKYEGESSCYYSSARLWDDGVIEPTKTRETLGLAFAAALENPSPPTKFGVFRM 262          
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: A0A7S2EAG9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EAG9_9STRA)

HSP 1 Score: 343 bits (881), Expect = 4.710e-117
Identity = 169/233 (72.53%), Postives = 199/233 (85.41%), Query Frame = 1
Query:   28 VIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAP--RTSFGVFRM 720
            V+AR++DGSRFHEFK +YG TIVTGFG +YGQ +G+VANNG+LFSESSLKAAHFVELC QRGIP+LF+QNITGFMVGK+YE++GIAK+GAKLVTAVA +KVPK+T VIGGSYGAGNYGMCGRAYSPRFL+MWPNARI VMGGEQAA VL+  V++D    +G T   E+E +  +P+LEK+ERESS Y+SSARLWDDG+IDPADTR VLG SL VA++       T FGVFRM
Sbjct:   30 VLARILDGSRFHEFKSQYGQTIVTGFGSIYGQPIGVVANNGILFSESSLKAAHFVELCSQRGIPILFVQNITGFMVGKKYENEGIAKNGAKLVTAVATSKVPKLTLVIGGSYGAGNYGMCGRAYSPRFLYMWPNARIGVMGGEQAAGVLS-TVQRDNIELKGGTWSNEEEEDFKKPILEKYERESSAYYSSARLWDDGIIDPADTRVVLGCSLAVASRVGCTPNETKFGVFRM 261          
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: K3X1F2_GLOUD (Methylcrotonoyl-CoA carboxylase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1F2_GLOUD)

HSP 1 Score: 352 bits (903), Expect = 2.230e-116
Identity = 172/232 (74.14%), Postives = 197/232 (84.91%), Query Frame = 1
Query:   25 QVIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM 720
            +VIAR+VDGS+F EFK+ YGTTIVTGF  LYG  VGI+ANNG+LFSESS+KAAHF+ELC QRGIPLLFLQNITGFMVGK+ EH GIAKDGAK+V AV+CAKVPKITC+IGGSYGAGNYGMCGRA+SPRFL+MWPNARISVMGGEQAA VLAQV ++D     G+T   E+EA   +P L+K+E+ESS YFS+ARLWDDG+IDP DTR+VLGLSL  A    A  T FGVFRM
Sbjct:  317 KVIARIVDGSKFDEFKKYYGTTIVTGFAKLYGNPVGIIANNGILFSESSVKAAHFIELCSQRGIPLLFLQNITGFMVGKKAEHGGIAKDGAKMVMAVSCAKVPKITCIIGGSYGAGNYGMCGRAFSPRFLYMWPNARISVMGGEQAAGVLAQV-QRDNLERAGKTWTAEEEAAFKQPTLDKYEKESSAYFSTARLWDDGIIDPKDTRKVLGLSLSAALNEHAQETKFGVFRM 547          
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: M4BBK0_HYAAE (Methylcrotonoyl-CoA carboxylase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BBK0_HYAAE)

HSP 1 Score: 352 bits (902), Expect = 5.660e-116
Identity = 174/232 (75.00%), Postives = 195/232 (84.05%), Query Frame = 1
Query:   25 QVIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM 720
            +VIAR+VDGSRF EFK+ YG TIVTGF  LYG  VGI+ANNG+LFSESS+KAAHF+ELCCQRGIPLLFLQNITGFMVGK+ EH GIAKDGAK+V AVA AKVPKITCVIGGSYGAGNYGMCGRA+SPRFL+MWPNARISVMGGEQAA VLAQV ++D    R ET   EDEA   +P+L+K+E ESS Y+S+ARLWDDG+IDP DTR+VLGLSL  A       T FGVFRM
Sbjct:  337 KVIARIVDGSRFDEFKKEYGATIVTGFARLYGNPVGIIANNGILFSESSVKAAHFIELCCQRGIPLLFLQNITGFMVGKKAEHGGIAKDGAKMVMAVANAKVPKITCVIGGSYGAGNYGMCGRAFSPRFLYMWPNARISVMGGEQAAGVLAQV-QRDNYERRKETWSDEDEAAFKQPILDKYEVESSAYYSTARLWDDGIIDPKDTRKVLGLSLSAALNEEPQETKFGVFRM 567          
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: A0A8K1CHG8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHG8_PYTOL)

HSP 1 Score: 351 bits (900), Expect = 1.310e-115
Identity = 171/232 (73.71%), Postives = 195/232 (84.05%), Query Frame = 1
Query:   25 QVIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM 720
            +VIAR+VDGS+F EFK+ YGTTIVTGF  LYG  VGI+ANNG+LFSESS+KAAHF+ELC QRGIPLLFLQNITGFMVGK+ EH GIAKDGAKLVTAV+CAKVPKITC+IGGSYGAGNYGMCGRA+SPRFL+MWPNARISVMGGEQAA VLAQV ++D     G+T   E+E    +P LEK+E ESS Y+S+ARLWDDG+IDP DTR++LGLSL  A       T FGVFRM
Sbjct:  342 KVIARIVDGSKFDEFKQHYGTTIVTGFARLYGNPVGIIANNGILFSESSVKAAHFIELCTQRGIPLLFLQNITGFMVGKKAEHGGIAKDGAKLVTAVSCAKVPKITCIIGGSYGAGNYGMCGRAFSPRFLYMWPNARISVMGGEQAAGVLAQV-QRDNIERAGKTWSQEEEDAFKKPTLEKYEHESSAYYSTARLWDDGIIDPKDTRKILGLSLSAALNEEPKETKFGVFRM 572          
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: A0A0P1APM1_PLAHL (Methylcrotonoyl-CoA carboxylase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APM1_PLAHL)

HSP 1 Score: 350 bits (897), Expect = 3.210e-115
Identity = 170/232 (73.28%), Postives = 196/232 (84.48%), Query Frame = 1
Query:   25 QVIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM 720
            +VIAR+VDGSR  EFK+ YGTTIVTGF  LYG  VGIVANNG+LFS+SS+KAAHF+ELCCQRGIPLLFLQNITGFMVGK+ EH GIAKDGAK+V AVA AKVPKITC+IGGSYGAGNYGMCGRA+SPRFL+MWPNARISVMGGEQAA VLAQV +++    R ET   E E    +P+L+K+++ESS Y+S+ARLWDDG+IDP DTR+VLGLSL V      P+T FGVFRM
Sbjct:  337 KVIARIVDGSRLDEFKKEYGTTIVTGFARLYGNPVGIVANNGILFSDSSVKAAHFIELCCQRGIPLLFLQNITGFMVGKKAEHGGIAKDGAKMVMAVANAKVPKITCIIGGSYGAGNYGMCGRAFSPRFLYMWPNARISVMGGEQAAGVLAQV-QRENYERRKETWSAEQETAFKQPILDKYDQESSAYYSTARLWDDGIIDPKDTRKVLGLSLSVGLHEMPPKTQFGVFRM 567          
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Match: A0A7K8GAA9_ORTSP (MCCB carboxylase (Fragment) n=6 Tax=Neognathae TaxID=8825 RepID=A0A7K8GAA9_ORTSP)

HSP 1 Score: 340 bits (871), Expect = 5.220e-115
Identity = 163/232 (70.26%), Postives = 189/232 (81.47%), Query Frame = 1
Query:   25 QVIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNGVLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAKLVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMGGEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSSARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM 720
            +VIAR+VDGSRF EFK  YG T+VTGF  ++G  VGI+ NNGVLFSES+ K  HF++LCCQR IP++FLQNITGFMVGK YE  GIAKDGAK+VTAVACA VPKIT +IGGSYGAGNYGMCGRAYSPRFL+MWPNARISVMGGEQAA VLA +  KD++A  G+ L   DEA + EP++ +FE E +PY+SSARLWDDG+IDPADTR VLGLSL  A      +T FGVFRM
Sbjct:   66 EVIARIVDGSRFDEFKALYGDTLVTGFARIFGYPVGIIGNNGVLFSESAKKGTHFIQLCCQRNIPIVFLQNITGFMVGKEYEAGGIAKDGAKMVTAVACASVPKITVIIGGSYGAGNYGMCGRAYSPRFLYMWPNARISVMGGEQAATVLATIA-KDQKAREGKQLSEADEAALKEPIIRRFEEEGNPYYSSARLWDDGIIDPADTRLVLGLSLSAALNAPTKKTEFGVFRM 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66019.14191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXN5_9PHAE2.130e-14989.66CoA carboxyltransferase C-terminal domain-containi... [more]
D7G8N5_ECTSI2.300e-14288.79Methylcrotonoyl-CoA carboxylase n=1 Tax=Ectocarpus... [more]
A0A835Z7I2_9STRA1.740e-11976.29Methylcrotonoyl-CoA carboxylase n=1 Tax=Tribonema ... [more]
A0A7S2BWJ0_9STRA8.470e-11872.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2EAG9_9STRA4.710e-11772.53Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K3X1F2_GLOUD2.230e-11674.14Methylcrotonoyl-CoA carboxylase n=1 Tax=Globispora... [more]
M4BBK0_HYAAE5.660e-11675.00Methylcrotonoyl-CoA carboxylase n=1 Tax=Hyaloperon... [more]
A0A8K1CHG8_PYTOL1.310e-11573.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1APM1_PLAHL3.210e-11573.28Methylcrotonoyl-CoA carboxylase n=1 Tax=Plasmopara... [more]
A0A7K8GAA9_ORTSP5.220e-11570.26MCCB carboxylase (Fragment) n=6 Tax=Neognathae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66019contigH-elongata_contig66019:1546..3262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score422.2
Seed ortholog evalue1.7e-115
Seed eggNOG ortholog2880.D7G8N5
KEGG rclassRC00367,RC00942
KEGG koko:K01969
KEGG ReactionR04138
KEGG Pathwayko00280,ko01100,map00280,map01100
KEGG ModuleM00036
EggNOG free text desc.CoA carboxylase activity
EggNOG OGsCOG4799@1,KOG0540@2759
EC6.4.1.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMethylcrotonoyl-CoA carboxylase beta chain
Ec32 orthologEc-22_002400.1
Exons3
Model size723
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66019.14191.1prot_H-elongata_contig66019.14191.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66019 1546..3262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931048.7883406-CDS-H-elongata_contig66019:1545..17851622931048.7883406-CDS-H-elongata_contig66019:1545..1785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66019 1546..1785 -
1691679676.9951077-CDS-H-elongata_contig66019:1545..17851691679676.9951077-CDS-H-elongata_contig66019:1545..1785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66019 1546..1785 -
1622931048.8124564-CDS-H-elongata_contig66019:1993..22241622931048.8124564-CDS-H-elongata_contig66019:1993..2224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66019 1994..2224 -
1691679677.0077229-CDS-H-elongata_contig66019:1993..22241691679677.0077229-CDS-H-elongata_contig66019:1993..2224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66019 1994..2224 -
1622931048.8560972-CDS-H-elongata_contig66019:3010..32621622931048.8560972-CDS-H-elongata_contig66019:3010..3262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66019 3011..3262 -
1691679677.0174837-CDS-H-elongata_contig66019:3010..32621691679677.0174837-CDS-H-elongata_contig66019:3010..3262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66019 3011..3262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66019.14191.1

>prot_H-elongata_contig66019.14191.1 ID=prot_H-elongata_contig66019.14191.1|Name=mRNA_H-elongata_contig66019.14191.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp
MFCRGRTSQVIARLVDGSRFHEFKERYGTTIVTGFGHLYGQSVGIVANNG
VLFSESSLKAAHFVELCCQRGIPLLFLQNITGFMVGKRYEHQGIAKDGAK
LVTAVACAKVPKITCVIGGSYGAGNYGMCGRAYSPRFLFMWPNARISVMG
GEQAAKVLAQVVEKDKRAARGETLGVEDEANIVEPLLEKFERESSPYFSS
ARLWDDGVIDPADTRRVLGLSLRVATKHAAPRTSFGVFRM*
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mRNA from alignment at H-elongata_contig66019:1546..3262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66019.14191.1 ID=mRNA_H-elongata_contig66019.14191.1|Name=mRNA_H-elongata_contig66019.14191.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1717bp|location=Sequence derived from alignment at H-elongata_contig66019:1546..3262- (Himanthalia elongata Himel1 dioecious)
ATGTTTTGCCGCGGACGGACGTCGCAGGTGATCGCGCGACTGGTCGATGG CAGTCGATTCCACGAGTTTAAAGAGCGGTACGGTACGACCATCGTGACGG GGTTTGGTCACCTATACGGCCAGAGTGTGGGGATCGTGGCGAACAACGGG GTACTGTTCTCGGAGTCGTCCCTGAAGGCCGCTCATTTCGTGGAGCTCTG CTGTCAACGGGGCATCCCGCTTCTATTCTTGCAGAACATTACGGGCTTCA TGGTGGGTGCATTGACCTGCAGAATCATTTCTTCTCGGGATGTTTTTGGA TAGTCTTTCCGTTAAACGGAGGAAGGGGATTATACAGACTTATCCCCGAG TTAAGGGAAGGCGGTGTCAAAGCGGCCTCTGCCGGTAACAGTATTGATGA GATTCAGCTTAGGTGGAGAGAATGATTGGGTCAACGCGGGAATGTACGGC CGACAGTCTCGCGAGATCAATTTTTAATTTTTTAGGTGTAAACGGGGACA AGGAAAAATATCATTTTCCCTTTTCAGCTCACCCTGAGCAAGATTGGCAA CCATATCCGGTTGATCCATACTATGGGCTAGATGTTATGCACACAAAACA TGTATATCGTAGAAAATATGATTGATCCCCCATTGGGAGGATCCATGCGC GTATATCAGAATGACTAGCATGATAGGGCCGGATTACGCGGTTACGTGCA CCTTATTAAATACACACACACTCAGTGGAATGAGTTCTGTTCGGGGAATA CTAGCCAATCACGTAAGGGGTTGGGTAGCCTCATAATCGGGAAGGACTGT TTCGATTCCGTCAACCATGAACTCGGGGGGATATTAGTAATATCACCTCC CTCCACTCATTTCGTTCAATGAGACTTGGGGGTGGATATGTGTGTTTGAG TAAGCTGCGGTATACCAGCGTAGACTGCTAGAGCTACATTATTTTTTCTT TCTCTCTTGCACACAAAGAATATAAAAATACCCCCGTCTTATAATTCCAA TACTCTGATGGAAATCCTCCCCGTTGCTTCACACGCAGGTCGGCAAGCGC TACGAGCACCAGGGGATAGCTAAGGACGGGGCCAAGCTGGTGACGGCCGT GGCCTGCGCGAAAGTTCCCAAGATTACTTGCGTCATCGGCGGAAGCTACG GCGCAGGGAACTACGGCATGTGCGGAAGGGCCTACTCGCCGCGATTCCTA TTCATGTGGCCGAACGCGCGCATCTCCGTGATGGGAGGGGAGCAAGCGGC GAAAGTCTTGGCACAGGTTGTCGACGCAGAGACAGATCGGGCGTGATGAC ATGCTTTCACGTCTTTTTCAATTGTAGACTTGATTTTATCTCTATAACGG AGACTCGTGCACTAGGGCGCCCAAGCGAAAAGACTCCGCGGAGCAAAATA TTTTATTTCCTAGCAAACCGATCCCTTCCTAAAACTTGACCCTCTAGGCT CATTTGCCGGCGGCGCAAAATCGACAGGTGGAGAAAGACAAGCGCGCGGC TCGCGGGGAAACCTTGGGGGTCGAAGATGAAGCCAATATCGTGGAGCCCC TGCTCGAAAAGTTCGAGCGTGAGAGCTCTCCCTACTTTTCTAGCGCGCGC CTTTGGGATGATGGGGTGATAGATCCCGCCGACACCCGGCGGGTTCTGGG GCTGAGCCTCCGCGTGGCAACAAAACACGCGGCTCCACGAACGTCTTTTG GAGTCTTCCGTATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig66019:1546..3262-

>mRNA_H-elongata_contig66019.14191.1 ID=mRNA_H-elongata_contig66019.14191.1|Name=mRNA_H-elongata_contig66019.14191.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig66019:1546..3262- (Himanthalia elongata Himel1 dioecious)
ATGTTTTGCCGCGGACGGACGTCGCAGGTGATCGCGCGACTGGTCGATGG
CAGTCGATTCCACGAGTTTAAAGAGCGGTACGGTACGACCATCGTGACGG
GGTTTGGTCACCTATACGGCCAGAGTGTGGGGATCGTGGCGAACAACGGG
GTACTGTTCTCGGAGTCGTCCCTGAAGGCCGCTCATTTCGTGGAGCTCTG
CTGTCAACGGGGCATCCCGCTTCTATTCTTGCAGAACATTACGGGCTTCA
TGATGTTTTGCCGCGGACGGACGTCGCAGGTGATCGCGCGACTGGTCGAT
GGCAGTCGATTCCACGAGTTTAAAGAGCGGTACGGTACGACCATCGTGAC
GGGGTTTGGTCACCTATACGGCCAGAGTGTGGGGATCGTGGCGAACAACG
GGGTACTGTTCTCGGAGTCGTCCCTGAAGGCCGCTCATTTCGTGGAGCTC
TGCTGTCAACGGGGCATCCCGCTTCTATTCTTGCAGAACATTACGGGCTT
CATGGTCGGCAAGCGCTACGAGCACCAGGGGATAGCTAAGGACGGGGCCA
AGCTGGTGACGGCCGTGGCCTGCGCGAAAGTTCCCAAGATTACTTGCGTC
ATCGGCGGAAGCTACGGCGCAGGGAACTACGGCATGTGCGGAAGGGCCTA
CTCGCCGCGATTCCTATTCATGTGGCCGAACGCGCGCATCTCCGTGATGG
GAGGGGAGCAAGCGGCGAAAGTCTTGGCACAGGTTGTCGGCAAGCGCTAC
GAGCACCAGGGGATAGCTAAGGACGGGGCCAAGCTGGTGACGGCCGTGGC
CTGCGCGAAAGTTCCCAAGATTACTTGCGTCATCGGCGGAAGCTACGGCG
CAGGGAACTACGGCATGTGCGGAAGGGCCTACTCGCCGCGATTCCTATTC
ATGTGGCCGAACGCGCGCATCTCCGTGATGGGAGGGGAGCAAGCGGCGAA
AGTCTTGGCACAGGTTGTGGAGAAAGACAAGCGCGCGGCTCGCGGGGAAA
CCTTGGGGGTCGAAGATGAAGCCAATATCGTGGAGCCCCTGCTCGAAAAG
TTCGAGCGTGAGAGCTCTCCCTACTTTTCTAGCGCGCGCCTTTGGGATGA
TGGGGTGATAGATCCCGCCGACACCCGGCGGGTTCTGGGGCTGAGCCTCC
GCGTGGCAACAAAACACGCGGCTCCACGAACGTCTTTTGGAGTCTTCCGT
ATGTAAGTGGAGAAAGACAAGCGCGCGGCTCGCGGGGAAACCTTGGGGGT
CGAAGATGAAGCCAATATCGTGGAGCCCCTGCTCGAAAAGTTCGAGCGTG
AGAGCTCTCCCTACTTTTCTAGCGCGCGCCTTTGGGATGATGGGGTGATA
GATCCCGCCGACACCCGGCGGGTTCTGGGGCTGAGCCTCCGCGTGGCAAC
AAAACACGCGGCTCCACGAACGTCTTTTGGAGTCTTCCGTATGTAA
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