mRNA_H-elongata_contig66007.14189.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig66007.14189.1
Unique NamemRNA_H-elongata_contig66007.14189.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A1X7U173_AMPQE (tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U173_AMPQE)

HSP 1 Score: 88.2 bits (217), Expect = 1.350e-18
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 RRTMGMKVVWK---KKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQVQ 240
            +RT G+   WK   K   WIS +KET S+L   +  S FPP+A+EA+ ++L RC+R+ P  QDTGGFFVA+ SKT P+ WQVQ
Sbjct:  355 KRTNGVNT-WKVLTKNGEWISSYKETPSNLLHTVHSSMFPPTALEADTYQLNRCIRIFPHQQDTGGFFVALLSKTSPLPWQVQ 436          
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: D8LLJ3_ECTSI (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ3_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.700e-16
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   64 ETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
            E  ++  R ++PSFFPP   +A+  +LERC+R+LPQDQDTGGFFVAV  KTGPI+WQ
Sbjct:  332 EVDTATTRKMIPSFFPPDEDKAKALRLERCMRMLPQDQDTGGFFVAVMVKTGPILWQ 388          
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A6H5LDC1_9PHAE (SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDC1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.490e-16
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1
Query:   64 ETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
            E  ++  R ++PSFFPP   +A+  +LERC+R+LPQDQDTGGFFV+V  KTGPI+WQ
Sbjct:  497 EVDTATTRKMIPSFFPPDEDKAKALRLERCMRMLPQDQDTGGFFVSVMVKTGPILWQ 553          
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A2T7NHK6_POMCA (tRNA (cytosine(34)-C(5))-methyltransferase n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NHK6_POMCA)

HSP 1 Score: 72.0 bits (175), Expect = 6.580e-13
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   34 KKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIW 231
            KK  WI   ++    +   I  S FPP+A EAE FKL RC+RVLP  QDTGGFF+AV  K  P+ W
Sbjct:  382 KKGEWIHSIEDVPLHMKSQITKSMFPPTAEEAERFKLHRCIRVLPHQQDTGGFFIAVLQKIQPLPW 447          
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: UPI0005CF3494 (LOW QUALITY PROTEIN: tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CF3494)

HSP 1 Score: 69.7 bits (169), Expect = 4.250e-12
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   46 WISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
            + + W++    L   I P  FPP   EAE F LERC+R+LP  QDTGGFFVAV  K  P+ W+
Sbjct:  376 YFTSWEKVPEQLQTQIRPKMFPPKPEEAEHFHLERCMRILPHHQDTGGFFVAVLVKLKPLPWE 438          
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: V4ABW0_LOTGI (tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4ABW0_LOTGI)

HSP 1 Score: 69.3 bits (168), Expect = 5.790e-12
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   22 VVWK---KKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIW 231
              WK   K+ +W  ++ +    L   I  S FPP+  EAEV +LE+CVR+LP  Q+TGGFF+AVF KT  + W
Sbjct:  340 TTWKVMSKEGTWYDKFDDLPQLLTNQIRHSMFPPTPEEAEVMQLEKCVRILPHHQNTGGFFIAVFQKTKTLPW 412          
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A6P3XKD6_DINQU (tRNA (cytosine(34)-C(5))-methyltransferase n=2 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3XKD6_DINQU)

HSP 1 Score: 69.3 bits (168), Expect = 5.840e-12
Identity = 31/63 (49.21%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   46 WISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
            + + W+E        I P  FPP A EA  F LERC+R+LP  QDTGGFFVAV  K  P+ W+
Sbjct:  378 YYNAWEEVPEQWQTQIRPKMFPPPADEASKFHLERCMRILPHHQDTGGFFVAVLEKVKPLPWE 440          
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: B3RJG2_TRIAD (tRNA (cytosine(34)-C(5))-methyltransferase n=2 Tax=Trichoplax TaxID=10227 RepID=B3RJG2_TRIAD)

HSP 1 Score: 68.9 bits (167), Expect = 7.940e-12
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    1 RRTMGMKVVWK---KKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIW 231
            +R  GM   WK   K+ +W + + +   S    I PS FPPS  EA+   L+RC+R+LPQDQ+TGGFFVAV  K   + W
Sbjct:  342 KRRSGMNT-WKVLSKQGNWYNNFSDVPVSDSAMIKPSMFPPSESEAQEMHLDRCLRILPQDQNTGGFFVAVLQKVDHLTW 420          
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A8E0SA22_9TREM (tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0SA22_9TREM)

HSP 1 Score: 68.6 bits (166), Expect = 1.090e-11
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   25 VWKKKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQVQ 240
            V  +K +W  R+++  +SL   I PS FPP  V      LERC+RVLP DQ+TGGFF+AV  K  P+ W  Q
Sbjct:  382 VMTRKGAWFERFEDVPASLHSNIRPSMFPPPNVSE--LHLERCMRVLPHDQNTGGFFIAVLEKIAPLPWLKQ 451          
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Match: A0A6L5DHL3_9INSE (tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DHL3_9INSE)

HSP 1 Score: 68.2 bits (165), Expect = 1.480e-11
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   49 ISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVRVLPQDQDTGGFFVAVFSKTGPIIWQ 234
             + ++E   +L   I P  FPP+  +A  F L+RCVR+LP  QDTGGFFVAVF K GP+ W+
Sbjct:  364 FNSFEEVPENLHTQIRPHLFPPTPDKAAEFHLKRCVRILPHMQDTGGFFVAVFEKHGPLPWE 425          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig66007.14189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7U173_AMPQE1.350e-1851.81tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax... [more]
D8LLJ3_ECTSI3.700e-1661.40SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A6H5LDC1_9PHAE9.490e-1659.65SAM_MT_RSMB_NOP domain-containing protein n=1 Tax=... [more]
A0A2T7NHK6_POMCA6.580e-1351.52tRNA (cytosine(34)-C(5))-methyltransferase n=2 Tax... [more]
UPI0005CF34944.250e-1249.21LOW QUALITY PROTEIN: tRNA (cytosine(34)-C(5))-meth... [more]
V4ABW0_LOTGI5.790e-1245.21tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax... [more]
A0A6P3XKD6_DINQU5.840e-1249.21tRNA (cytosine(34)-C(5))-methyltransferase n=2 Tax... [more]
B3RJG2_TRIAD7.940e-1245.00tRNA (cytosine(34)-C(5))-methyltransferase n=2 Tax... [more]
A0A8E0SA22_9TREM1.090e-1147.22tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax... [more]
A0A6L5DHL3_9INSE1.480e-1150.00tRNA (cytosine(34)-C(5))-methyltransferase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig66007contigH-elongata_contig66007:442..1330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score88.6
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog400682.PAC_15712448
Preferred nameNSUN2
KEGG koko:K15335
GOsGO:0000003,GO:0000049,GO:0000075,GO:0001510,GO:0001942,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005856,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008544,GO:0008757,GO:0009451,GO:0009888,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0019953,GO:0021700,GO:0022402,GO:0022404,GO:0022405,GO:0022412,GO:0022414,GO:0030154,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033313,GO:0033391,GO:0034470,GO:0034641,GO:0034660,GO:0035770,GO:0036464,GO:0042303,GO:0042633,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043588,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045786,GO:0046483,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048519,GO:0048523,GO:0048609,GO:0048731,GO:0048820,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0051321,GO:0051704,GO:0051726,GO:0060429,GO:0065007,GO:0070013,GO:0071695,GO:0071704,GO:0090304,GO:0097159,GO:0098773,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1903046,GO:1990904
EggNOG free text desc.Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
EggNOG OGs38F5P@33154,3BEZD@33208,COG0144@1,KOG2198@2759
EC2.1.1.203
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig66007.14189.1prot_H-elongata_contig66007.14189.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig66007 451..1330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931048.5467649-UTR-H-elongata_contig66007:441..4501622931048.5467649-UTR-H-elongata_contig66007:441..450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66007 442..450 +
1691679676.8753674-UTR-H-elongata_contig66007:441..4501691679676.8753674-UTR-H-elongata_contig66007:441..450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig66007 442..450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931048.5590396-CDS-H-elongata_contig66007:450..5301622931048.5590396-CDS-H-elongata_contig66007:450..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66007 451..530 +
1691679676.8905313-CDS-H-elongata_contig66007:450..5301691679676.8905313-CDS-H-elongata_contig66007:450..530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66007 451..530 +
1622931048.5719702-CDS-H-elongata_contig66007:1179..13301622931048.5719702-CDS-H-elongata_contig66007:1179..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66007 1180..1330 +
1691679676.9001684-CDS-H-elongata_contig66007:1179..13301691679676.9001684-CDS-H-elongata_contig66007:1179..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig66007 1180..1330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig66007.14189.1

>prot_H-elongata_contig66007.14189.1 ID=prot_H-elongata_contig66007.14189.1|Name=mRNA_H-elongata_contig66007.14189.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MGMKVVWKKKESWISRWKETGSSLGRPILPSFFPPSAVEAEVFKLERCVR
VLPQDQDTGGFFVAVFSKTGPIIWQVQ
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mRNA from alignment at H-elongata_contig66007:442..1330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig66007.14189.1 ID=mRNA_H-elongata_contig66007.14189.1|Name=mRNA_H-elongata_contig66007.14189.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=889bp|location=Sequence derived from alignment at H-elongata_contig66007:442..1330+ (Himanthalia elongata Himel1 dioecious)
CGCAGAACGATGGGGATGAAGGTCGTGTGGAAGAAAAAGGAAAGCTGGAT ATCGAGATGGAAGGAGACGGGGAGTTCCCTTGGCCGGCCGTGGCGTCGGA TACTCCGTTGCAGGACGCGGTCAAGGCCGGGTTGAGGCATCATCCGTCGT TTGCGGAAAAAGACGATGGCACCTCTCGCAAGTGAGTGTTTGCGGCCGGG TCTGGCTGCTGTGGTATCGCCCACGATTTAGCGAGCTGTTCTCCTTCGGG GTGGGTGTTCGTGTTGTCGGCATCGCCGTCGTTTACCTTCACCCGCCGCT GGGTACACTCCATGGGCGGTACTCTCTTACGGTGACTACCAGCAGACACA TAAACGATGACAGTCCCAAGGGCGATACACAGTGAGCAAGGCATTTGATC TCCTCTTACAGCGCGAGATCAATGAAGACGAATTTGAAAGACGTATCTGT AGACGCAGTGAGAGTCGATCCGACCAGGATACTCGTAAGGTGTTTCCGCA GCTTCGGCGTCAGCCCGCGCGTGGACTCGCAGGAGGTGGACGATTGAAGA CTATTCAAAAATAATCCCGGATAATTATGGGGATGGAGAAATTGGGCCAA GGTCCAGATCTACCTCCCCTTTCCCTCCTCCCTCTTCCCCCATAATATAT GCGGTGCTTTTGCTGACGGCGCGGTCGTTCCACCCACCCCGCGATTCATT CGCGCGCGCACTCTGTTTCCCCGAATTCGACCGAGAAGAATCCTGCCTAG CTTTTTCCCGCCTTCTGCCGTGGAAGCTGAGGTGTTCAAGCTCGAGCGGT GCGTGCGGGTGCTTCCTCAGGATCAGGACACTGGAGGCTTTTTTGTCGCC GTCTTTTCAAAGACGGGCCCCATCATCTGGCAGGTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig66007:442..1330+

>mRNA_H-elongata_contig66007.14189.1 ID=mRNA_H-elongata_contig66007.14189.1|Name=mRNA_H-elongata_contig66007.14189.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig66007:442..1330+ (Himanthalia elongata Himel1 dioecious)
ATGGGGATGAAGGTCGTGTGGAAGAAAAAGGAAAGCTGGATATCGAGATG
GAAGGAGACGGGGAGTTCCCTTGGCCGGCCATGGGGATGAAGGTCGTGTG
GAAGAAAAAGGAAAGCTGGATATCGAGATGGAAGGAGACGGGGAGTTCCC
TTGGCCGGCCAATCCTGCCTAGCTTTTTCCCGCCTTCTGCCGTGGAAGCT
GAGGTGTTCAAGCTCGAGCGGTGCGTGCGGGTGCTTCCTCAGGATCAGGA
CACTGGAGGCTTTTTTGTCGCCGTCTTTTCAAAGACGGGCCCCATCATCT
GGCAGGTACAGAATCCTGCCTAGCTTTTTCCCGCCTTCTGCCGTGGAAGC
TGAGGTGTTCAAGCTCGAGCGGTGCGTGCGGGTGCTTCCTCAGGATCAGG
ACACTGGAGGCTTTTTTGTCGCCGTCTTTTCAAAGACGGGCCCCATCATC
TGGCAGGTACAG
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