mRNA_H-elongata_contig660.14187.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: D7FQX9_ECTSI (Exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX9_ECTSI) HSP 1 Score: 350 bits (899), Expect = 2.700e-103 Identity = 176/242 (72.73%), Postives = 200/242 (82.64%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANSPLTLCNWKNSMVTCQPRAPINEICVL---SVVPTSSRG 842
MGI GLL LKSVTY HISEYRG GVDAYCWLHRGAFSCG ELCTGVAT+KYV FCMKRVNL+ HG++P+MVFDGASLP+K +LERRRQR+ ARSKG+ ALAAGEAGAAA HFSKAV VTHDMAF L+K LR++ VEL+VAPYEADAQLA+LSR G VD V++EDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAAN+PL+L NWKNSM ++C+L +P+S +G
Sbjct: 1 MGITGLLPFLKSVTYPTHISEYRGLKAGVDAYCWLHRGAFSCGMELCTGVATDKYVAFCMKRVNLLLHHGIQPVMVFDGASLPIKRSINLERRRQRETARSKGEAALAAGEAGAAAQHFSKAVGVTHDMAFLLMKALRQAGVELVVAPYEADAQLAFLSRTGAVDVVLSEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFL--------DLCLLVGCDYIPSSVKG 234
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: A0A6H5JK90_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK90_9PHAE) HSP 1 Score: 270 bits (689), Expect = 4.930e-78 Identity = 135/182 (74.18%), Postives = 150/182 (82.42%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKV 671
MGI GLL LKSVTY HISEYRG GVDAYCWLHRGAFSCG ELCTGVAT+KYV FCMKRVNL+ HG++P+MVFDGASLP+K LERRRQR++ARSKG+ GAAA HFSKAV VTHDMAF L+K LR++ VELIVAPYEADAQLA+LSR G VD V++EDSDCLPYGCKKV
Sbjct: 1 MGITGLLPFLKSVTYPTHISEYRGLKAGVDAYCWLHRGAFSCGMELCTGVATDKYVAFCMKRVNLLLHHGIQPVMVFDGASLPIKRRITLERRRQRESARSKGEAXXXXXXXGAAAQHFSKAVGVTHDMAFHLMKALRQAGVELIVAPYEADAQLAFLSRTGAVDVVLSEDSDCLPYGCKKV 182
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: W7TNX5_9STRA (Exonuclease 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNX5_9STRA) HSP 1 Score: 244 bits (623), Expect = 2.710e-68 Identity = 121/215 (56.28%), Postives = 152/215 (70.70%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANSPLTLCNWKNSM 770
MGI GLL LKSVT+ VH+ EY+G G+DA+CWLHRGAF+C TEL G T+KY+ FCM+RV +++++G+ P MVFDGAS+P K + HL RR R AR+K G+ G A F KAV +TH+MA+ LIK L+ + V +VAPYEADAQLAYL+R GVVD VI+EDSD LPYGC +VLFK+D EG QEI+ RNLA N W +M
Sbjct: 1 MGIAGLLPLLKSVTHTVHLREYQGMMAGIDAFCWLHRGAFTCCTELVLGKTTDKYIRFCMERVRILQENGITPFMVFDGASIPAKRDLHLSRRAARTEARAKALAVHEEGQIGQARTLFQKAVIITHEMAYELIKCLQEANVRYMVAPYEADAQLAYLARKGVVDLVISEDSDTLPYGCPRVLFKLDKEGRAQEIERRNLALNEDYDFEGWTENM 215
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: A0A836CAX1_9STRA (Exonuclease 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX1_9STRA) HSP 1 Score: 243 bits (621), Expect = 2.850e-68 Identity = 115/215 (53.49%), Postives = 160/215 (74.42%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANSPLTLCNWKNSM 770
MGI GLL LKS+T+ VH+ + G TVGVDAYCWLHRGA+SC TE+C G T+K+V FCM+R+ L+ HGV P +VFDGA LP+K + RR R A +K + A+AAGE AA H++++VA+TH++A I+ L R ++ +VAPYEADAQLA++S+ G++DA+ITEDSDCLP+ CK++LFK++N+G QEI+ R+L++N +L W SM
Sbjct: 1 MGISGLLQTLKSITHPVHVRDLEGLTVGVDAYCWLHRGAYSCSTEICRGEFTDKFVRFCMRRIELLLSHGVTPWVVFDGAPLPMKHGVNKARRDARAANLAKAEAAMAAGEPIAAQQHYARSVAITHELARMFIRSLARRGIKFVVAPYEADAQLAFMSQQGLIDAIITEDSDCLPFCCKRMLFKLENDGSAQEIRARDLSSNENPSLAGWTYSM 215
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: A0A6A7G944_9CRUS (Exonuclease 1 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G944_9CRUS) HSP 1 Score: 233 bits (594), Expect = 8.870e-66 Identity = 122/231 (52.81%), Postives = 156/231 (67.53%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANSPLTLCNWKNSMVTCQPRAPINEICVLS 818
MGI GLL L+S+ VHIS Y+ VGVD YCWLH+G +SC T+LC G AT++Y+ FC+KRV L+ H V P+M+FDG LP K EK ER +R A + KG +LA G A AA + F AV VT MA LIK+L+ VE IVAPYEAD+QLA+LS+ + VI+EDSD L +GCK+VLFKMD +GHG+EI+L+NL A + + NW + M I E+CVLS
Sbjct: 1 MGIQGLLPLLRSIEDSVHISHYKNQRVGVDTYCWLHKGVYSCSTDLCLGRATDRYIEFCLKRVRLLLHHRVIPVMIFDGGKLPQKMEKEKERESKRAAYKEKGLMSLAEGNATAANNCFQHAVDVTPLMASKLIKKLKEMDVECIVAPYEADSQLAFLSKTDQIQCVISEDSDLLTFGCKRVLFKMDEQGHGKEIRLKNLGAVTDVNFVNWSHEM--------IQEMCVLS 223
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: D8RZD7_SELML (Exonuclease 1 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RZD7_SELML) HSP 1 Score: 221 bits (562), Expect = 1.460e-59 Identity = 114/231 (49.35%), Postives = 150/231 (64.94%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANSPLTLCNWKNSMVTCQPRAPINEICVLS 818
MGI GLL ALKS+T ++ EY G V VD Y WLH+ AFSC ++C G AT ++ +CM RVNL+R HG+KP++VFDG SLP+K E+ +R R R+ + A+G AA H+ KAV +T ++A LI LRR VE IV+PYEADAQ+A+L+ GVVDAVITEDSD + YGC K+LFKMD G G E+Q +L N L L ++ M+ E+C+LS
Sbjct: 1 MGIQGLLPALKSITTSTNVKEYSGMRVAVDTYSWLHKAAFSCSKDICDGRATASFLNYCMHRVNLLRHHGIKPLLVFDGGSLPMKAEQEEKRSRAREEHLKLARECEASGNHAAAYDHYQKAVDITPEVAHQLILVLRRENVEYIVSPYEADAQMAFLALRGVVDAVITEDSDLVAYGCPKILFKMDKNGQGFELQYADLVKNRDLNLTSFTKRMML--------EMCILS 223
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: UPI000D1C6787 (exonuclease 1 n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C6787) HSP 1 Score: 221 bits (562), Expect = 2.370e-57 Identity = 114/231 (49.35%), Postives = 150/231 (64.94%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANSPLTLCNWKNSMVTCQPRAPINEICVLS 818
MGI GLL ALKS+T ++ EY G V VD Y WLH+ AFSC ++C G AT ++ +CM RVNL+R HG+KP++VFDG SLP+K E+ +R R R+ + A+G AA H+ KAV +T ++A LI LRR VE IV+PYEADAQ+A+L+ GVVDAVITEDSD + YGC K+LFKMD G G E+Q +L N L L ++ M+ E+C+LS
Sbjct: 1 MGIQGLLPALKSITTSTNVKEYSGMRVAVDTYSWLHKAAFSCSKDICDGRATASFLNYCMHRVNLLRHHGIKPLLVFDGGSLPMKAEQEEKRSRAREEHLKLARECEASGNHAAAYDHYQKAVDITPEVAHQLILVLRRENVEYIVSPYEADAQMAFLALRGVVDAVITEDSDLVAYGCPKILFKMDKNGQGFELQYADLVKNRDLNLTSFTKRMML--------EMCILS 223
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: A0A8K1CG03_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG03_PYTOL) HSP 1 Score: 207 bits (527), Expect = 4.330e-57 Identity = 101/217 (46.54%), Postives = 144/217 (66.36%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANSPLTLCNWKNSMVT 776
MG+ GLL LKSV +VH+++Y+G VG+DA WL++G +SC ++ G T+ Y+ FC++++ L ++H + PI VFDGA LP K E++ R R R ++K L G+ A F+KAV+VT+DM LI LRR ++ VAPYEADAQLAYLSR ++D VI+EDSDC+PYGC+ VLFK+ +G E++ R+L AN L+ W MV+
Sbjct: 1 MGVQGLLPMLKSVMDQVHVAKYKGKRVGIDASGWLYKGCYSCAMDVVLGRDTDAYLNFCLQQIKLFQEHEITPIFVFDGAPLPAKAEQNASRNRTRSMWKTKAMRILEDGDEAGAVTAFNKAVSVTNDMVMKLIAILRRMEIQYYVAPYEADAQLAYLSRSKIIDVVISEDSDCIPYGCRTVLFKITADGWASELKRRSLGANEDLSFVGWTEEMVS 217
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: A0A0L0D5E5_THETB (Exonuclease 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D5E5_THETB) HSP 1 Score: 218 bits (555), Expect = 8.220e-57 Identity = 116/213 (54.46%), Postives = 141/213 (66.20%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANSPLTLCNWKN 764
MGIPGLL AL+ + VH ++ G TVGVD YCWLHRG + C LC G T+ YV F RV ++R HGV P++VFDGASLP KG RR +R A R+KG+ LA G A F KA VT +MA A+I ++ VE IVAPYEADAQLA+L+R GVVDAVITEDSD L YG ++V+FKMD G G EI NL+A+S L L W +
Sbjct: 1 MGIPGLLQALRGASTEVHAAQLAGLTVGVDTYCWLHRGGYGCARRLCLGEPTDMYVRFVEFRVEMLRHHGVTPVLVFDGASLPSKGATDAGRRTRRAAMRAKGEALLADGNHAKADSCFQKAFEVTAEMAAAVISAMQAQGVECIVAPYEADAQLAWLARNGVVDAVITEDSDLLVYGVERVIFKMDRLGAGVEINAANLSASSSLDLHGWSH 213
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Match: A0A7S0QPV1_9CRYP (Exonuclease 1 (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPV1_9CRYP) HSP 1 Score: 210 bits (534), Expect = 2.680e-56 Identity = 107/213 (50.23%), Postives = 140/213 (65.73%), Query Frame = 3
Query: 126 MGIPGLLIALKSVTYRVHISEYRGFTVGVDAYCWLHRGAFSCGTELCTGVATEKYVTFCMKRVNLMRQHGVKPIMVFDGASLPLKGEKHLERRRQRDAARSKGQTALAAGEAGAAAHHFSKAVAVTHDMAFALIKELRRSRVELIVAPYEADAQLAYLSRYGVVDAVITEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANSPLTLCNWKN 764
MGI GLL L ++ H+S Y+G V VD Y WLHRGA+SC ELCTG T+KY+T+C+ RV L+ HGV P+M+FDGA LP K R+ R+ ++KG AL + AA +F +AV +T MA LIK LR+ +VE IVAP+EADAQLAYL+ G V AVI+EDSD + +G V+FKMD EGHG+E + + L A L L W++
Sbjct: 1 MGISGLLPVLGNIMESKHVSVYKGMKVAVDTYGWLHRGAYSCSLELCTGAPTDKYITYCIDRVKLLLHHGVTPVMIFDGADLPSKKGTETNRKSSREEFKAKGLQALRSDNRAAAMEYFQRAVDITPRMAHRLIKALRKIKVECIVAPHEADAQLAYLNLKGYVQAVISEDSDIVAFGADTVMFKMDREGHGREYRRKLLGACDKLRLAGWEH 213 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig660.14187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig660.14187.1 >prot_H-elongata_contig660.14187.1 ID=prot_H-elongata_contig660.14187.1|Name=mRNA_H-elongata_contig660.14187.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=714bp MAFSVWQSTVHLMPLGQTAKDGGNLDFLGFHLSSEVVKGVAYGHLHPNTHback to top mRNA from alignment at H-elongata_contig660:3179..10564+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig660.14187.1 ID=mRNA_H-elongata_contig660.14187.1|Name=mRNA_H-elongata_contig660.14187.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7386bp|location=Sequence derived from alignment at H-elongata_contig660:3179..10564+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig660:3179..10564+ >mRNA_H-elongata_contig660.14187.1 ID=mRNA_H-elongata_contig660.14187.1|Name=mRNA_H-elongata_contig660.14187.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4284bp|location=Sequence derived from alignment at H-elongata_contig660:3179..10564+ (Himanthalia elongata Himel1 dioecious)back to top |