mRNA_H-elongata_contig6599.14185.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6599.14185.1
Unique NamemRNA_H-elongata_contig6599.14185.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.640e-57
Identity = 91/136 (66.91%), Postives = 102/136 (75.00%), Query Frame = 1 
Query:    1 MSFGVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV 396
            MSFGVQE SW D REC  WIS SW+ RPNNGSII     IL+LDDFKCH+ E FIA L++  NT VI IPGG T  +QPLDRMLNKQ+KR LRGKYTAY+A AV D   GKLKPP   +VSTWCKK W +ITP+ V
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIIQQRLCILVLDDFKCHKGEGFIAPLKRDANTIVIFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWESITPETV 136
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.080e-57
Identity = 90/134 (67.16%), Postives = 104/134 (77.61%), Query Frame = 1 
Query:    1 MSFGVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPD 390
            MSFGVQE SWCD REC LWI +SW+ RPNNGSI+     IL+LDDFKCH+D+ FIA L++  NT VI IPGGLT  +QPLDRMLNKQ+KR LRG YTA+TAKA  DP  GKL PPG   V+TWCK  WA+ITP+
Sbjct:  337 MSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPE 470
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5L467_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L467_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 4.420e-57
Identity = 89/136 (65.44%), Postives = 101/136 (74.26%), Query Frame = 1 
Query:    1 MSFGVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV 396
            MSFGVQE SW D REC  WIS SW  RPNNGSI+     IL+LDDFKCH+DE+FIA L+   NT VI IPGGL   +QPLDRMLNKQ+KR LRGKYTAY+A AV D   GK KPP   +VSTWCK+ W +ITP+ V
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWNLRPNNGSIVQQRPCILVLDDFKCHKDESFIAALKNDANTIVIFIPGGLAPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKQKPPERGVVSTWCKEEWESITPETV 136
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.580e-56
Identity = 90/136 (66.18%), Postives = 105/136 (77.21%), Query Frame = 1 
Query:    1 MSFGVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV 396
            MSFGVQE SW D REC  WIS SW+ RPNNGSI+     IL+LDDFKCH+DE +IA L++  NT VI+IPGGLT  +QPLDRMLNKQ+KR LRGKYTAY+A AV D   GKLKPP   +VSTWCK+ W +ITP+ V
Sbjct:  217 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETV 352
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.740e-56
Identity = 89/136 (65.44%), Postives = 104/136 (76.47%), Query Frame = 1 
Query:    1 MSFGVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV 396
            MSFGVQE SWCD RE  LWI +SW+ RPNNGS++     IL+LDDFKCH+D+ FIA L++  NT VI IPGGLT  +QPLDRMLNKQ+KR LRG YTA+TAKA  DP  GKL PPG   V+TWCK  WA+ITP+ V
Sbjct:  330 MSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETV 465
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 4.790e-56
Identity = 87/136 (63.97%), Postives = 103/136 (75.74%), Query Frame = 1 
Query:    1 MSFGVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV 396
            MSFGVQ  SW D REC  WIS SW+ RPNNGSI+     IL+LDDFKCH+DE FIA L++  NT +I IPGG+T  +QPLDR+LNKQ+KR LRGKYTAY+A AV D   GKLKPP   +VSTWCK+ W +ITP+ V
Sbjct:   78 MSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETV 213
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.540e-55
Identity = 90/136 (66.18%), Postives = 104/136 (76.47%), Query Frame = 1 
Query:    1 MSFGVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV 396
            MSFGVQE SWCD REC LWI +SW+ RPNNGSI+     IL+LDDFKCH+D+ FIA L++  NT VI IPGGL    QPLDRMLNKQ+KR LRG YTA+TAKA  DP  GKL PPG   V+TWCK  WA+ITP++V
Sbjct:  371 MSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLVPPGRGAVATWCKNAWASITPEIV 506
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 3.640e-55
Identity = 87/136 (63.97%), Postives = 101/136 (74.26%), Query Frame = 1 
Query:    1 MSFGVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV 396
            MSFGVQE SW D REC  WIS SW+FRPNNGSI+     IL+LDDFKC +DE FIA L++  NT  I IPGGLT  +QPLDR+LNKQ+KR LRGKYTAY+A AV D   GKLKPP   +VSTWC + W +I P+ V
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYTAYSASAVADARSGKLKPPERGVVSTWCTEAWESIIPETV 136
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.580e-54
Identity = 88/136 (64.71%), Postives = 101/136 (74.26%), Query Frame = 1 
Query:    1 MSFGVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV 396
            MSFGVQE SW D REC  WIS SW+ RPNNGSI+     IL+LDD KCH+ E FIA L++  NT VI IPGGLT  +QPLDRMLNKQ+KR LRGKYTAY+  AV D   GKLKPP   +VSTWCK+ W +ITP+ V
Sbjct:   98 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDVKCHKYEGFIAALKRDANTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWESITPETV 233
[Close]
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.010e-54
Identity = 88/133 (66.17%), Postives = 99/133 (74.44%), Query Frame = 1 
Query:   10 GVQENSWCDARECTLWISESWRFRPNNGSIIT----ILMLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAVDDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV 396
            GVQE SWCD REC LWI +SW+ RPNNGSI+     IL+LDDFKCH+D+ FIA L K  NT VI IPGGLT  +QPLDRMLNKQ+KR LRG YTA TAKA  DP  G L PPG   V+TWCK  WA+ITP+ V
Sbjct:  370 GVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDPKTGNLAPPGRGAVATWCKNAWASITPETV 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6599.14185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBJ7_9PHAE1.640e-5766.91DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE2.080e-5767.16DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L467_9PHAE4.420e-5765.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE2.580e-5666.18DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE2.740e-5665.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE4.790e-5663.97DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE2.540e-5566.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8W0_9PHAE3.640e-5563.97DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQK9_9PHAE1.580e-5464.71DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE2.010e-5466.17DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6599contigH-elongata_contig6599:7092..7499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.683762-CDS-H-elongata_contig6599:7091..71951622931047.683762-CDS-H-elongata_contig6599:7091..7195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6599 7092..7195 +
1691679676.3870945-CDS-H-elongata_contig6599:7091..71951691679676.3870945-CDS-H-elongata_contig6599:7091..7195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6599 7092..7195 +
1622931047.7019448-CDS-H-elongata_contig6599:7207..74991622931047.7019448-CDS-H-elongata_contig6599:7207..7499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6599 7208..7499 +
1691679676.404517-CDS-H-elongata_contig6599:7207..74991691679676.404517-CDS-H-elongata_contig6599:7207..7499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6599 7208..7499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6599.14185.1prot_H-elongata_contig6599.14185.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6599 7092..7499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6599.14185.1

>prot_H-elongata_contig6599.14185.1 ID=prot_H-elongata_contig6599.14185.1|Name=mRNA_H-elongata_contig6599.14185.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MSFGVQENSWCDARECTLWISESWRFRPNNGSIITILMLDDFKCHRDEAF
IADLRKRCNTSVILIPGGLTSFVQPLDRMLNKQIKRQLRGKYTAYTAKAV
DDPTMGKLKPPGNEMVSTWCKKVWAAITPDVV
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mRNA from alignment at H-elongata_contig6599:7092..7499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6599.14185.1 ID=mRNA_H-elongata_contig6599.14185.1|Name=mRNA_H-elongata_contig6599.14185.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig6599:7092..7499+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGTGCAC
CCTTTGGATCTCGGAGAGCTGGAGGTTTCGCCCCAACAACGGAAGCATTA
TCACGTAGCGCCCGAGCATCCTGATGTTGGACGACTTCAAATGCCACCGT
GACGAGGCCTTCATTGCTGACCTCCGGAAGAGGTGCAACACCAGCGTCAT
CCTGATCCCGGGTGGGTTGACTTCTTTCGTCCAGCCACTGGACCGCATGC
TCAACAAGCAGATAAAGCGGCAACTGCGGGGGAAGTACACCGCCTACACC
GCCAAAGCGGTTGACGACCCAACTATGGGCAAGCTAAAGCCGCCGGGTAA
TGAGATGGTGTCCACGTGGTGCAAGAAGGTGTGGGCAGCCATCACCCCCG
ACGTGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig6599:7092..7499+

>mRNA_H-elongata_contig6599.14185.1 ID=mRNA_H-elongata_contig6599.14185.1|Name=mRNA_H-elongata_contig6599.14185.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig6599:7092..7499+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGTGCAC
CCTTTGGATCTCGGAGAGCTGGAGGTTTCGCCCCAACAACGGAAGCATTA
TCACATGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGT
GCACCCTTTGGATCTCGGAGAGCTGGAGGTTTCGCCCCAACAACGGAAGC
ATTATCACCATCCTGATGTTGGACGACTTCAAATGCCACCGTGACGAGGC
CTTCATTGCTGACCTCCGGAAGAGGTGCAACACCAGCGTCATCCTGATCC
CGGGTGGGTTGACTTCTTTCGTCCAGCCACTGGACCGCATGCTCAACAAG
CAGATAAAGCGGCAACTGCGGGGGAAGTACACCGCCTACACCGCCAAAGC
GGTTGACGACCCAACTATGGGCAAGCTAAAGCCGCCGGGTAATGAGATGG
TGTCCACGTGGTGCAAGAAGGTGTGGGCAGCCATCACCCCCGACGTGGTC
CATCCTGATGTTGGACGACTTCAAATGCCACCGTGACGAGGCCTTCATTG
CTGACCTCCGGAAGAGGTGCAACACCAGCGTCATCCTGATCCCGGGTGGG
TTGACTTCTTTCGTCCAGCCACTGGACCGCATGCTCAACAAGCAGATAAA
GCGGCAACTGCGGGGGAAGTACACCGCCTACACCGCCAAAGCGGTTGACG
ACCCAACTATGGGCAAGCTAAAGCCGCCGGGTAATGAGATGGTGTCCACG
TGGTGCAAGAAGGTGTGGGCAGCCATCACCCCCGACGTGGTC
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