mRNA_H-elongata_contig65983.14184.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65983.14184.1
Unique NamemRNA_H-elongata_contig65983.14184.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65983.14184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65983contigH-elongata_contig65983:1172..1939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65983.14184.1prot_H-elongata_contig65983.14184.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65983 1287..1670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.576369-UTR-H-elongata_contig65983:1171..12861622931047.576369-UTR-H-elongata_contig65983:1171..1286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65983 1172..1286 +
1691679676.3472626-UTR-H-elongata_contig65983:1171..12861691679676.3472626-UTR-H-elongata_contig65983:1171..1286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65983 1172..1286 +
1622931047.6129448-UTR-H-elongata_contig65983:1670..19391622931047.6129448-UTR-H-elongata_contig65983:1670..1939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65983 1671..1939 +
1691679676.3660483-UTR-H-elongata_contig65983:1670..19391691679676.3660483-UTR-H-elongata_contig65983:1670..1939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65983 1671..1939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.5939608-CDS-H-elongata_contig65983:1286..16701622931047.5939608-CDS-H-elongata_contig65983:1286..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65983 1287..1670 +
1691679676.3563774-CDS-H-elongata_contig65983:1286..16701691679676.3563774-CDS-H-elongata_contig65983:1286..1670Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65983 1287..1670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65983.14184.1

>prot_H-elongata_contig65983.14184.1 ID=prot_H-elongata_contig65983.14184.1|Name=mRNA_H-elongata_contig65983.14184.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
MAELKVATAASTTIGTLDTATLSTGNTACTSPSATPEVQEAAHIEVAVEG
GGESHANQATTTHDGALWPTGLEVSSPVPERAAGKADATSVASTAKSPSC
MSEIGRCCLTAVCVGSAIGVFLLARRA*
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mRNA from alignment at H-elongata_contig65983:1172..1939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65983.14184.1 ID=mRNA_H-elongata_contig65983.14184.1|Name=mRNA_H-elongata_contig65983.14184.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig65983:1172..1939+ (Himanthalia elongata Himel1 dioecious)
TACCACTGCCAGCTTCGAAGAAGTAAAAGATACAGAGCATGACGAAGTGG
CAGCACAAGGTTCAGGCGCGGATCACGTACCCGAGGCCATTGAGAGCGGT
AAAGTGGACAACGCTATGGCGGAGCTGAAGGTTGCCACCGCTGCTTCTAC
CACCATTGGAACCCTCGACACCGCCACCCTTTCTACTGGCAACACTGCAT
GCACATCTCCGTCCGCTACGCCAGAAGTGCAGGAGGCAGCACACATCGAG
GTTGCCGTGGAGGGAGGAGGAGAATCTCACGCAAATCAGGCCACCACAAC
ACATGATGGCGCTCTTTGGCCAACAGGGCTCGAAGTTTCTTCTCCAGTGC
CCGAGAGAGCGGCTGGAAAAGCTGACGCTACTAGTGTGGCTTCCACCGCT
AAGAGTCCTAGCTGCATGTCTGAAATCGGCCGCTGCTGCTTGACTGCCGT
TTGTGTGGGGTCGGCAATTGGGGTGTTCTTGCTCGCTCGCAGGGCGTGAT
GCGCAACTTTTATTTTCATACTCGAGGCGCGCGAGTCGGCCGGGATTCGT
ACCACTCCTGGCTGTATATTGTAGTTGTAATGGTGTCGCTAGAAGAGGGG
GGTTATATTTTCATCTAAAGGGAAATATTTCTTTGGCATTTTTTGCTAGG
ACAAGACATAACATCGTACTTCGCATATACACTACGTACATAAGTCAATA
ATAATGTGTGGACTTCAAACTAATAGAGTATAGCGAGTGTTCGTGATTTT
ATTTAGGGTCGTTAACCG
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Coding sequence (CDS) from alignment at H-elongata_contig65983:1172..1939+

>mRNA_H-elongata_contig65983.14184.1 ID=mRNA_H-elongata_contig65983.14184.1|Name=mRNA_H-elongata_contig65983.14184.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig65983:1172..1939+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGAGCTGAAGGTTGCCACCGCTGCTTCTACCACCATTGGAACCCT
CGACACCGCCACCCTTTCTACTGGCAACACTGCATGCACATCTCCGTCCG
CTACGCCAGAAGTGCAGGAGGCAGCACACATCGAGGTTGCCGTGGAGGGA
GGAGGAGAATCTCACGCAAATCAGGCCACCACAACACATGATGGCGCTCT
TTGGCCAACAGGGCTCGAAGTTTCTTCTCCAGTGCCCGAGAGAGCGGCTG
GAAAAGCTGACGCTACTAGTGTGGCTTCCACCGCTAAGAGTCCTAGCTGC
ATGTCTGAAATCGGCCGCTGCTGCTTGACTGCCGTTTGTGTGGGGTCGGC
AATTGGGGTGTTCTTGCTCGCTCGCAGGGCGTGAATGGCGGAGCTGAAGG
TTGCCACCGCTGCTTCTACCACCATTGGAACCCTCGACACCGCCACCCTT
TCTACTGGCAACACTGCATGCACATCTCCGTCCGCTACGCCAGAAGTGCA
GGAGGCAGCACACATCGAGGTTGCCGTGGAGGGAGGAGGAGAATCTCACG
CAAATCAGGCCACCACAACACATGATGGCGCTCTTTGGCCAACAGGGCTC
GAAGTTTCTTCTCCAGTGCCCGAGAGAGCGGCTGGAAAAGCTGACGCTAC
TAGTGTGGCTTCCACCGCTAAGAGTCCTAGCTGCATGTCTGAAATCGGCC
GCTGCTGCTTGACTGCCGTTTGTGTGGGGTCGGCAATTGGGGTGTTCTTG
CTCGCTCGCAGGGCGTGA
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