mRNA_H-elongata_contig65947.14180.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65947.14180.1
Unique NamemRNA_H-elongata_contig65947.14180.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65947.14180.1 vs. uniprot
Match: A0A6H5KYC8_9PHAE (RNase III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYC8_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 3.290e-83
Identity = 168/317 (53.00%), Postives = 206/317 (64.98%), Query Frame = 1 
Query:    1 PHLRTGQGQPVRGTKILADCFEAVLGAVYVDAGGCSDLEPIHGILARVIPSYEREHG----RRPPQNFHPSEHXXXXXXXXXXXNIADAHAPPESPRPRAKEATKLMNLAHRITQMARQGMTANQSGDLESNGAARGQVSSPPRMS-----AQPSPQEVVREFDERLRSFERNSLRRGSLSYATSAFVEDFGAGVANFFQDAASD-PDKSGLLDDVLAGSSMLRKHFVDAPPGAERVVMEVVLVSSEVRLQYFSAVEHLMINVLR-QGGDRERS---ALRLIRSAPDGGATVALLSNLIVDSATSLLFSSRQRAALS 909
            P+LR G GQPV GTKILADCFEAVLGAVYVDAGGCSDLEPIH ILARVIPSY+ +      R+PP   HP  H               A  PP  P P A+   KLMNLAHR+TQ+A++     + G   +    +G   + P +S     +   P EVVREFD RLR F+ N LR G+LS+++ AF   FG   A FF   A+  P++  LLD VL GSSMLRKHF  APPGAERVVMEVVLV SE+RLQ F+ VE L+ NVL+ QGG  E +    LRLIRSAP G AT+A LS+++ ++AT+LL ++ QRA +S
Sbjct:  108 PYLRIGHGQPVGGTKILADCFEAVLGAVYVDAGGCSDLEPIHAILARVIPSYKHDRRLQVPRQPPHPRHPHSHPHG------------AMEPP--PGPPAEGPRKLMNLAHRLTQIAKRDADRVEGGGGRAAQPMQGDAPASPPLSRAANGSDRDPLEVVREFDGRLRDFQGNVLRGGALSFSSRAFAGAFGEDEARFFSAVATGCPERCALLDSVLDGSSMLRKHFDGAPPGAERVVMEVVLVPSELRLQTFTVVEFLLNNVLQPQGGSGEPADNPVLRLIRSAPHGDATIAFLSSIVTETATNLLLNAHQRATIS 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65947.14180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYC8_9PHAE3.290e-8353.00RNase III domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65947contigH-elongata_contig65947:303..2601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue4.4e-71
Seed eggNOG ortholog2880.D8LTJ8
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG1817@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNAseIII
Ec32 orthologEc-02_005870.1
Exons5
Model size975
Cds size975
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65947.14180.1prot_H-elongata_contig65947.14180.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65947 303..2601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.1879401-CDS-H-elongata_contig65947:302..3781622931047.1879401-CDS-H-elongata_contig65947:302..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 303..378 +
1691679676.2030137-CDS-H-elongata_contig65947:302..3781691679676.2030137-CDS-H-elongata_contig65947:302..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 303..378 +
1622931047.2085245-CDS-H-elongata_contig65947:646..8931622931047.2085245-CDS-H-elongata_contig65947:646..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 647..893 +
1691679676.2160141-CDS-H-elongata_contig65947:646..8931691679676.2160141-CDS-H-elongata_contig65947:646..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 647..893 +
1622931047.2229536-CDS-H-elongata_contig65947:1231..13551622931047.2229536-CDS-H-elongata_contig65947:1231..1355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 1232..1355 +
1691679676.224302-CDS-H-elongata_contig65947:1231..13551691679676.224302-CDS-H-elongata_contig65947:1231..1355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 1232..1355 +
1622931047.2360306-CDS-H-elongata_contig65947:1723..19691622931047.2360306-CDS-H-elongata_contig65947:1723..1969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 1724..1969 +
1691679676.2328422-CDS-H-elongata_contig65947:1723..19691691679676.2328422-CDS-H-elongata_contig65947:1723..1969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 1724..1969 +
1622931047.2560778-CDS-H-elongata_contig65947:2319..26011622931047.2560778-CDS-H-elongata_contig65947:2319..2601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 2320..2601 +
1691679676.2411726-CDS-H-elongata_contig65947:2319..26011691679676.2411726-CDS-H-elongata_contig65947:2319..2601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65947 2320..2601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65947.14180.1

>prot_H-elongata_contig65947.14180.1 ID=prot_H-elongata_contig65947.14180.1|Name=mRNA_H-elongata_contig65947.14180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp
PHLRTGQGQPVRGTKILADCFEAVLGAVYVDAGGCSDLEPIHGILARVIP
SYEREHGRRPPQNFHPSEHHHHRHHHHPHHNIADAHAPPESPRPRAKEAT
KLMNLAHRITQMARQGMTANQSGDLESNGAARGQVSSPPRMSAQPSPQEV
VREFDERLRSFERNSLRRGSLSYATSAFVEDFGAGVANFFQDAASDPDKS
GLLDDVLAGSSMLRKHFVDAPPGAERVVMEVVLVSSEVRLQYFSAVEHLM
INVLRQGGDRERSALRLIRSAPDGGATVALLSNLIVDSATSLLFSSRQRA
ALSPAQPPSHTHVPIPSPASQPPPP
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mRNA from alignment at H-elongata_contig65947:303..2601+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65947.14180.1 ID=mRNA_H-elongata_contig65947.14180.1|Name=mRNA_H-elongata_contig65947.14180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2299bp|location=Sequence derived from alignment at H-elongata_contig65947:303..2601+ (Himanthalia elongata Himel1 dioecious)
CCGCATCTCCGAACCGGTCAAGGACAGCCCGTCAGAGGGACGAAGATCCT
CGCCGACTGTTTCGAAGCCGTCTTAGGTGAGGGAGGGGCATCGCGAGAGA
AAGTCTGGAGACTATCATCGTCTGCAGTAAATAATTCGCTTGCTCTGGGC
AAAATATACTCGGAAGAACGATTACGTGACGATGGCAATAAACCGTGTCA
TTAAGGTTGGGGTGGAAATATGGTAGTCGCTTGGTTCGAGCCAAGATAGC
TGCGAGGCGTTGACTTCTTAAACATGGGTGTAATCTGCTGAACGACGCAA
GAATCGCAGGGACCGATACTTCCGCTCTCGGTTATTATGCCAAGGTGCTG
TGTACGTTGACGCTGGAGGATGTTCCGACCTCGAGCCCATCCACGGTATC
CTGGCCAGGGTGATCCCGTCATACGAACGTGAGCACGGGAGGCGACCGCC
GCAGAATTTCCACCCATCGGAACATCATCATCATCGTCATCATCATCACC
CTCACCACAATATCGCGGATGCACATGCGCCGCCTGAGTCACCGAGGCCG
AGGGCGAAGGAGGCGACCAAGCTGATGAACCTAGCCCATAGGTGCGTGGG
TCGCCCCTCGCAGAGTTTACCGATTTGCGCGGTCCCCGAAGCGGCAGACG
CAGGTCATCTCTTGTACAGTTCCCCACGAGCTCCCGAGCTTGAGGAAGAA
TATATCAGGGTGTCTTGACGCTGAGTCGTACTCGCTTGATCACCAGGGAC
CCCAAGACCCCCGAGTGATTTTCCCTTTAAAAGGCACAAGCAAGCCCACG
ATGGAAGCTTACGGAGACGGTGAAAAATACAGAAGAGTGGCGTTTCGCGT
GTCACTCGCCTCGTCTCGATTCTTCAACTTGACGCCCGCGGTGTTATAAA
ACCTCCGTGCTACGTTATTTTTTTCGCAGAATCACACAGATGGCCAGGCA
GGGCATGACAGCGAACCAATCGGGAGACCTGGAATCGAATGGCGCTGCCC
GTGGCCAGGTGTCGTCGCCTCCCCGAATGAGTGCACAGCCCAGCCCGCAG
GAGGTGCGCGACACCACGCTATTCCCTCTATTACACACGTGTTGGTGAAG
AAGTCGTGGTAGAATTATGTAGATTGACCAGCTTGAAAAGAATATCGCTC
CCCCGTCGATTGTCGGCAAGGCGCATGGTGGTGCAGCTTTGAGCGATCAC
CACTTGTTTTCCTGAGACGAGGCATTGCCAGTTATCTGTGATGGAGGCGA
TTGCGGGACCAATTTGCCGGTTTGGTCTCGTTGGGTGAGTGTGTGAGTGT
GTGAGTTTGTAGCATTAGTGACACGCCAAAACGAATGTTCTCCGCTGTGC
CTCTAATCCTCGATTATCTGTTTGGTCTTTCACTCACGAATTTCATTTTT
AATTTCGCTTGACGCCAAAAGGTCGTGCGCGAGTTCGATGAGCGCCTCCG
CAGCTTCGAAAGAAACTCTCTCCGAAGAGGTTCGCTAAGCTATGCCACCA
GTGCCTTCGTCGAAGACTTCGGCGCGGGCGTGGCAAATTTTTTCCAAGAT
GCCGCCAGTGACCCCGACAAATCCGGGTTGCTTGATGATGTCTTAGCTGG
ATCGTCCATGCTTCGGAAACACTTTGTCGATGCGCCACCTGGAGCCGAGC
GCGTCGTCATGGAAGTGGTGGGTGTGCGAATCTTACTTATGTCGGAGTGA
CGTGACCCCGTCGCGCATCGTGCTGTTTCAATGGAAGGCAATATCATTTT
CAGATCGTGCGCACGCCAATGCTTTATATATTGTTGCTTCGATTGATATA
GTATAGAAGCTGTAGTATAGAGAGTCATGCGCGACTACGTTCGTTCGTTG
TTTGTTGTCAACCCTTTCATCATCCTCCCATGCAAAGATCCCATATATCG
CGACTTCCAACTCCTTCGCCGATGGATGAGTAATTAAAGGTGTGTGTGGG
GGGGGAGGGGGCACAGCAAACCCTGACGTTAAATCTCTTCCACCTTGCCG
TCGGGTTCGTTGCTCAGGTTCTAGTTTCCTCGGAGGTTCGCTTGCAGTAC
TTCTCTGCGGTGGAGCATCTCATGATCAATGTGCTACGTCAGGGCGGCGA
TCGGGAACGAAGCGCGCTGCGCTTGATCCGATCGGCTCCGGACGGCGGCG
CCACTGTCGCCCTCCTTTCCAACTTGATCGTCGACAGTGCCACCAGCTTG
CTCTTTTCCAGCCGTCAGAGGGCCGCCTTATCACCAGCGCAGCCACCATC
ACACACACACGTTCCGATACCATCGCCAGCATCGCAACCGCCACCTCCT
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Coding sequence (CDS) from alignment at H-elongata_contig65947:303..2601+

>mRNA_H-elongata_contig65947.14180.1 ID=mRNA_H-elongata_contig65947.14180.1|Name=mRNA_H-elongata_contig65947.14180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at H-elongata_contig65947:303..2601+ (Himanthalia elongata Himel1 dioecious)
CCGCATCTCCGAACCGGTCAAGGACAGCCCGTCAGAGGGACGAAGATCCT
CGCCGACTGTTTCGAAGCCGTCTTAGCCGCATCTCCGAACCGGTCAAGGA
CAGCCCGTCAGAGGGACGAAGATCCTCGCCGACTGTTTCGAAGCCGTCTT
AGGTGCTGTGTACGTTGACGCTGGAGGATGTTCCGACCTCGAGCCCATCC
ACGGTATCCTGGCCAGGGTGATCCCGTCATACGAACGTGAGCACGGGAGG
CGACCGCCGCAGAATTTCCACCCATCGGAACATCATCATCATCGTCATCA
TCATCACCCTCACCACAATATCGCGGATGCACATGCGCCGCCTGAGTCAC
CGAGGCCGAGGGCGAAGGAGGCGACCAAGCTGATGAACCTAGCCCATAGG
TGCTGTGTACGTTGACGCTGGAGGATGTTCCGACCTCGAGCCCATCCACG
GTATCCTGGCCAGGGTGATCCCGTCATACGAACGTGAGCACGGGAGGCGA
CCGCCGCAGAATTTCCACCCATCGGAACATCATCATCATCGTCATCATCA
TCACCCTCACCACAATATCGCGGATGCACATGCGCCGCCTGAGTCACCGA
GGCCGAGGGCGAAGGAGGCGACCAAGCTGATGAACCTAGCCCATAGAATC
ACACAGATGGCCAGGCAGGGCATGACAGCGAACCAATCGGGAGACCTGGA
ATCGAATGGCGCTGCCCGTGGCCAGGTGTCGTCGCCTCCCCGAATGAGTG
CACAGCCCAGCCCGCAGGAGAATCACACAGATGGCCAGGCAGGGCATGAC
AGCGAACCAATCGGGAGACCTGGAATCGAATGGCGCTGCCCGTGGCCAGG
TGTCGTCGCCTCCCCGAATGAGTGCACAGCCCAGCCCGCAGGAGGTCGTG
CGCGAGTTCGATGAGCGCCTCCGCAGCTTCGAAAGAAACTCTCTCCGAAG
AGGTTCGCTAAGCTATGCCACCAGTGCCTTCGTCGAAGACTTCGGCGCGG
GCGTGGCAAATTTTTTCCAAGATGCCGCCAGTGACCCCGACAAATCCGGG
TTGCTTGATGATGTCTTAGCTGGATCGTCCATGCTTCGGAAACACTTTGT
CGATGCGCCACCTGGAGCCGAGCGCGTCGTCATGGAAGTGGTCGTGCGCG
AGTTCGATGAGCGCCTCCGCAGCTTCGAAAGAAACTCTCTCCGAAGAGGT
TCGCTAAGCTATGCCACCAGTGCCTTCGTCGAAGACTTCGGCGCGGGCGT
GGCAAATTTTTTCCAAGATGCCGCCAGTGACCCCGACAAATCCGGGTTGC
TTGATGATGTCTTAGCTGGATCGTCCATGCTTCGGAAACACTTTGTCGAT
GCGCCACCTGGAGCCGAGCGCGTCGTCATGGAAGTGGTTCTAGTTTCCTC
GGAGGTTCGCTTGCAGTACTTCTCTGCGGTGGAGCATCTCATGATCAATG
TGCTACGTCAGGGCGGCGATCGGGAACGAAGCGCGCTGCGCTTGATCCGA
TCGGCTCCGGACGGCGGCGCCACTGTCGCCCTCCTTTCCAACTTGATCGT
CGACAGTGCCACCAGCTTGCTCTTTTCCAGCCGTCAGAGGGCCGCCTTAT
CACCAGCGCAGCCACCATCACACACACACGTTCCGATACCATCGCCAGCA
TCGCAACCGCCACCTCCTGTTCTAGTTTCCTCGGAGGTTCGCTTGCAGTA
CTTCTCTGCGGTGGAGCATCTCATGATCAATGTGCTACGTCAGGGCGGCG
ATCGGGAACGAAGCGCGCTGCGCTTGATCCGATCGGCTCCGGACGGCGGC
GCCACTGTCGCCCTCCTTTCCAACTTGATCGTCGACAGTGCCACCAGCTT
GCTCTTTTCCAGCCGTCAGAGGGCCGCCTTATCACCAGCGCAGCCACCAT
CACACACACACGTTCCGATACCATCGCCAGCATCGCAACCGCCACCTCCT
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