prot_H-elongata_contig118343.1417.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig118343.1417.1
Unique Nameprot_H-elongata_contig118343.1417.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length49
Homology
BLAST of mRNA_H-elongata_contig118343.1417.1 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.090e-20
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    1 LCSPCEGKYKRRNYCPKCGVTFVDDDNTVKAVGCSACEFWVHAACEGLS 49
            LCSPC  KYK RNYCPKCGVT+ + DN V+A+GC+ACEFWVHA+CEGLS
Sbjct: 1177 LCSPCLDKYKERNYCPKCGVTYDEHDNMVQAIGCAACEFWVHASCEGLS 1225          
BLAST of mRNA_H-elongata_contig118343.1417.1 vs. uniprot
Match: A0A6H5KG36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG36_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.090e-20
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 0
Query:    1 LCSPCEGKYKRRNYCPKCGVTFVDDDNTVKAVGCSACEFWVHAACEGLS 49
            LCSPC  KYK RNYCPKCGVT+ + DN V+A+GC+ACEFWVHA+CEGLS
Sbjct: 1427 LCSPCLDKYKERNYCPKCGVTYDEHDNMVQAIGCAACEFWVHASCEGLS 1475          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118343.1417.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHU3_ECTSI4.090e-2075.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG36_9PHAE4.090e-2075.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 13..49
e-value: 3.0E-11
score: 44.7
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 11..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118343contigH-elongata_contig118343:210..356 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118343.1417.1mRNA_H-elongata_contig118343.1417.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig118343 210..356 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig118343.1417.1 ID=prot_H-elongata_contig118343.1417.1|Name=mRNA_H-elongata_contig118343.1417.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
LCSPCEGKYKRRNYCPKCGVTFVDDDNTVKAVGCSACEFWVHAACEGLS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD