mRNA_H-elongata_contig65895.14173.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65895.14173.1
Unique NamemRNA_H-elongata_contig65895.14173.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.630e-32
Identity = 63/126 (50.00%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
            C   I GIQ   ICCS SCG CGG GC SR GG + CC G + A    CS    APC+ +   E   C  G+ G+QQ DVCCS +CG+CGG GC+ R GG+ +CC G +  SG  CS    APCVV
Sbjct:  145 CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN---EVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVV 267          
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.760e-30
Identity = 66/142 (46.48%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVVDEE*GGPT*STEESHP 444
            C   I GIQ   ICCS  CG CGG GC SR GG + CC G + A    CS    APC+ +   E   C  G+ G+QQ DVCCS +CG+CGG GC+ R GG+ +CC G +  SG  CS    APCVV     GP  + E + P
Sbjct:  106 CDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN---EVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVVT----GPAFTPEPTVP 240          
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 8.170e-30
Identity = 60/126 (47.62%), Postives = 73/126 (57.94%), Query Frame = 1
Query:   19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
            C  DI GIQS  +CCS SCG CGG GC  R GG + CC G + A    CS    APC+  P+     C   + G+Q  DVCCS +CG+CGG GC+ R GG+ SCC G +  SG  CS    APC+ 
Sbjct:    2 CDGDIVGIQSSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMTVPM-----CDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGSESCCGGGVRASGRYCSITGEAPCMT 122          
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.720e-29
Identity = 62/140 (44.29%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPI--------------IEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
            C   I GIQS  +CCS SCG CGG GC  R GG + CC G + A    CS    APC+  P               +E   C  G+ G+Q  DVCCS +CG+CGG GCS R GG+ SCC G +  SG  CS    APC+ 
Sbjct:  239 CDGGIVGIQSSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDGGSESCCGGGVRGSGRYCSVTGEAPCMT 378          
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.110e-29
Identity = 59/140 (42.14%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPI--------------IEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
            C   I GIQ++ +CCS SCG CGG GC  R GG   CC G + A   LC+    APC+  P               +E   C  G+ G+Q  +VCCS +CG+CGG GCS R GG+ +CC G ++ SG LC+    APC+ 
Sbjct:  235 CDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDACCGGGVTASGRLCAVTGEAPCIT 374          
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 7.180e-29
Identity = 63/152 (41.45%), Postives = 77/152 (50.66%), Query Frame = 1
Query:   19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPI--------------IEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVVDEE*GGPT*STE 432
            C   I GIQ+  +CCS SCG CGG GC  R GG   CC G + A    CS    APC+  P               +E   C   + G+Q  DVCCS +CG+CGG GCS R GG+ +CC G +  SG  CS    APC+      GP  +TE
Sbjct:  180 CEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCMT-----GPAPTTE 326          
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 5.230e-28
Identity = 62/140 (44.29%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPII--------------EASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
            C   I GIQS  +CC+ SCG CGG GC  R GG   CC G + A    CS    APC+  P                E   C  G+ G+Q  DVCCS +CG+CGG GC+ R GGA +CC G +  SG  CS    APCVV
Sbjct:  136 CDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGEDACCGGGVRASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTEEVPMCDGGIVGIQSSDVCCSLSCGSCGGTGCTVRDGGADACCGGGVRASGRDCSVTGEAPCVV 275          
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 5.510e-28
Identity = 58/126 (46.03%), Postives = 71/126 (56.35%), Query Frame = 1
Query:   19 CGNDIPGIQSEGICCSDSCGECGGKGCGSRPGGPQKCCLGYIAAMNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGCSRRWGGASSCCVGTISKSGVLCSELEAAPCVV 396
            C   I GIQ+  +CCS SCG CGG GC  R GG   CC G + A    CS    APC+  P+     C  G+ G+Q  DVCCS +CG+C G GCS R GG+ +CC G +  SG  CS    APC+ 
Sbjct:   46 CDGGIVGIQTSDVCCSASCGSCGGTGCSGRDGGSGACCGGGVRASGRYCSVTGEAPCMTVPM-----CDGGIVGIQASDVCCSASCGSCAGTGCSGRDGGSGACCGGGVQASGRYCSVTGEAPCMT 166          
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.680e-27
Identity = 70/134 (52.24%), Postives = 80/134 (59.70%), Query Frame = 1
Query:   16 TCGNDIPGIQSEG--ICCSDSCGECGGKGCGSRPG-GPQKCCLGYIAAMNVLCSEINAAPCVIDPI-IEASTCSNGLAGVQQGDVCCSETC-GTCGGKGCSRRWG--GASSCCVGTISKSGVLCSELEAAPCVV 396
            TC N I GI+     ICC  +CG CGG GCG+  G     CC   IA +N LCS  N APCV+DP    ASTC NGLAGVQ G VCC+E C G CGG+GC    G  GA  CC  TI  +GV C E   APC++
Sbjct:  176 TCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIM 309          
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 8.240e-24
Identity = 62/149 (41.61%), Postives = 82/149 (55.03%), Query Frame = 1
Query:   16 TCGNDIPGIQSEGICCSDSCGECGGKGCGSRPG--GPQKCCLGYIAAMN--VLCSEINAAPCV--------IDPIIEA-------STCSNGLAGVQQGDVCCSETCGTCGGKGCSR--RWGGASSCCVGTISKSGVLCSELEAAPCVVD 399
            TC N IPG+    +CC ++CG+CGG+GCG+  G  G   CC   I   +  V C E   APCV        ++P  +        STCSNG+AG Q G +CC E CG CGG GC      GG+ +CC  TI  +GV+C E   APC+++
Sbjct:  291 TCSNGIPGVSDGDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCGE---APCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGE---APCIIE 433          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65895.14173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5D5_ECTSI1.630e-3250.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3T6_ECTSI2.760e-3046.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTV1_9PHAE8.170e-3047.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G4E0_ECTSI1.720e-2944.29N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5JWJ0_9PHAE4.110e-2942.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3Y1_9PHAE7.180e-2941.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVC9_9PHAE5.230e-2844.29AMOP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G3U7_ECTSI5.510e-2846.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7R2_9PHAE1.680e-2752.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZM1_ECTSI8.240e-2441.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65895contigH-elongata_contig65895:2454..3250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue4.7e-12
Seed eggNOG ortholog2880.D7FY01
KEGG koko:K13023
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01002
Hectar predicted targeting categoryother localisation
Exons3
Model size490
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65895.14173.1prot_H-elongata_contig65895.14173.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65895 2536..3100 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931046.0883906-UTR-H-elongata_contig65895:2453..25351622931046.0883906-UTR-H-elongata_contig65895:2453..2535Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65895 2454..2535 -
1691679675.7084212-UTR-H-elongata_contig65895:2453..25351691679675.7084212-UTR-H-elongata_contig65895:2453..2535Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65895 2454..2535 -
1622931046.158529-UTR-H-elongata_contig65895:3100..32501622931046.158529-UTR-H-elongata_contig65895:3100..3250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65895 3101..3250 -
1691679675.760106-UTR-H-elongata_contig65895:3100..32501691679675.760106-UTR-H-elongata_contig65895:3100..3250Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65895 3101..3250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931046.1040905-CDS-H-elongata_contig65895:2535..25401622931046.1040905-CDS-H-elongata_contig65895:2535..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65895 2536..2540 -
1691679675.7180598-CDS-H-elongata_contig65895:2535..25401691679675.7180598-CDS-H-elongata_contig65895:2535..2540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65895 2536..2540 -
1622931046.1218307-CDS-H-elongata_contig65895:2679..28711622931046.1218307-CDS-H-elongata_contig65895:2679..2871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65895 2680..2871 -
1691679675.731918-CDS-H-elongata_contig65895:2679..28711691679675.731918-CDS-H-elongata_contig65895:2679..2871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65895 2680..2871 -
1622931046.1425564-CDS-H-elongata_contig65895:3039..31001622931046.1425564-CDS-H-elongata_contig65895:3039..3100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65895 3040..3100 -
1691679675.7472074-CDS-H-elongata_contig65895:3039..31001691679675.7472074-CDS-H-elongata_contig65895:3039..3100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65895 3040..3100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65895.14173.1

>prot_H-elongata_contig65895.14173.1 ID=prot_H-elongata_contig65895.14173.1|Name=mRNA_H-elongata_contig65895.14173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MNVLCSEINAAPCVIDPIIEASTCSNGLAGVQQGDVCCSETCGTCGGKGC
SRRWGGASSCCVGTISKSGVLCSELEAAPCVVDEE*
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mRNA from alignment at H-elongata_contig65895:2454..3250-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65895.14173.1 ID=mRNA_H-elongata_contig65895.14173.1|Name=mRNA_H-elongata_contig65895.14173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=797bp|location=Sequence derived from alignment at H-elongata_contig65895:2454..3250- (Himanthalia elongata Himel1 dioecious)
GCGAGCTCAGGAGACACATGTGGAAACGACATTCCTGGCATTCAGTCGGA AGGTATCTGCTGCTCGGATTCGTGCGGCGAGTGTGGCGGGAAGGGCTGCG GCAGTCGCCCGGGTGGACCTCAAAAATGCTGCCTCGGCTACATCGCCGCC ATGAATGTGCTTTGCAGCGAAATAAATGCCGCCCCTTGCGTCATCGACCC GATAATTGAAGGTTTGTGCTTCAAAGTCGGTCTTACTGGTTAAGTCTATC TGTCCAGAAGGGCGATATGCCCAACGATGCCGAGATCCAAGTCATTCGTT CCATTCTGCCTTCGACATTTCCATCTCTTCTTCACCTTGTGTTTTATCGT GGTCGATGCCCGCCTTGTTGCCTCAACAGCGAGTACCTGTAGTAACGGGC TCGCTGGTGTGCAGCAAGGCGATGTGTGCTGTTCTGAAACCTGTGGGACC TGTGGTGGAAAAGGCTGCAGCCGGCGCTGGGGAGGCGCGAGTTCATGTTG TGTGGGTACCATTTCCAAGAGCGGGGTGCTATGCAGCGAGTTGGAAGCCG CCCCCTGCGTCGTCGATGAGGGTGAGCATTTTTCTAGAATAGAGCAATTC CAGATAATTTCTTGGCAAGCACAGGGAGTCGGCTGCTGCAGCATGTCATC TTGTTTTGGTCAATTTCGTTTCCGATGCCCTGCCCTCCTTGCCCACCTGC AACAACACAGAGTGAGGAGGACCAACTTAATCCACAGAAGAAAGCCACCC AGAGAGGAGGGATTTTGCCTTCCATCGCCTGTGCGCGGAGATTTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig65895:2454..3250-

>mRNA_H-elongata_contig65895.14173.1 ID=mRNA_H-elongata_contig65895.14173.1|Name=mRNA_H-elongata_contig65895.14173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig65895:2454..3250- (Himanthalia elongata Himel1 dioecious)
ATGAATGTGCTTTGCAGCGAAATAAATGCCGCCCCTTGCGTCATCGACCC
GATAATTGAAGATGAATGTGCTTTGCAGCGAAATAAATGCCGCCCCTTGC
GTCATCGACCCGATAATTGAAGCGAGTACCTGTAGTAACGGGCTCGCTGG
TGTGCAGCAAGGCGATGTGTGCTGTTCTGAAACCTGTGGGACCTGTGGTG
GAAAAGGCTGCAGCCGGCGCTGGGGAGGCGCGAGTTCATGTTGTGTGGGT
ACCATTTCCAAGAGCGGGGTGCTATGCAGCGAGTTGGAAGCCGCCCCCTG
CGTCGTCGATGAGGCGAGTACCTGTAGTAACGGGCTCGCTGGTGTGCAGC
AAGGCGATGTGTGCTGTTCTGAAACCTGTGGGACCTGTGGTGGAAAAGGC
TGCAGCCGGCGCTGGGGAGGCGCGAGTTCATGTTGTGTGGGTACCATTTC
CAAGAGCGGGGTGCTATGCAGCGAGTTGGAAGCCGCCCCCTGCGTCGTCG
ATGAGGAGTGAAGTGA
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