mRNA_H-elongata_contig65816.14168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65816.14168.1
Unique NamemRNA_H-elongata_contig65816.14168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65816.14168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65816contigH-elongata_contig65816:1801..2438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size640
Cds size636
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.727378-CDS-H-elongata_contig65816:1800..24361622931045.727378-CDS-H-elongata_contig65816:1800..2436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65816 1801..2436 +
1691679675.5681267-CDS-H-elongata_contig65816:1800..24361691679675.5681267-CDS-H-elongata_contig65816:1800..2436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65816 1801..2436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65816.14168.1prot_H-elongata_contig65816.14168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65816 1801..2436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65816.14168.1

>prot_H-elongata_contig65816.14168.1 ID=prot_H-elongata_contig65816.14168.1|Name=mRNA_H-elongata_contig65816.14168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
DPEDGAKFRESYLPHITARGPSVTVGTESGAEIAVDSLKGAIGVTADGAP
GEPGHRLMDSSDSSDGSDSSEESDSSDGSIKPGDAAAPVATFAAVATTAV
TSTPRKGLSKEIRSTGSSEAVTHVNDFPLFEGGYDNFVAWKKPFLMVAKQ
FNIFDALTSGVDIPVADVDKSVHQLQEEGFSAEDIDTHLAAWNTLSRTIK
AKDDQGILHRMA
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mRNA from alignment at H-elongata_contig65816:1801..2438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65816.14168.1 ID=mRNA_H-elongata_contig65816.14168.1|Name=mRNA_H-elongata_contig65816.14168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=638bp|location=Sequence derived from alignment at H-elongata_contig65816:1801..2438+ (Himanthalia elongata Himel1 dioecious)
GACCCTGAAGACGGCGCAAAGTTCAGGGAGTCATATCTGCCTCATATTAC
TGCACGTGGACCTAGCGTTACGGTGGGTACTGAGAGCGGTGCTGAGATTG
CAGTGGATAGTCTCAAGGGCGCTATAGGTGTCACCGCTGACGGGGCGCCC
GGGGAACCTGGTCACCGACTGATGGACTCGAGTGATTCTAGCGACGGGTC
TGATTCCAGCGAGGAGTCTGATTCGAGTGATGGATCTATCAAACCCGGGG
ATGCTGCCGCTCCTGTTGCTACTTTTGCTGCCGTTGCTACAACAGCTGTT
ACGTCCACTCCTCGAAAGGGCTTATCAAAAGAAATCCGTAGTACGGGCTC
GAGTGAGGCAGTGACGCATGTCAACGACTTCCCTCTTTTTGAGGGAGGGT
ATGATAACTTCGTGGCGTGGAAGAAACCCTTCCTCATGGTGGCGAAGCAG
TTCAATATCTTCGACGCGCTTACGAGCGGCGTCGACATCCCCGTGGCCGA
CGTGGATAAGTCGGTGCATCAACTACAAGAAGAAGGGTTTAGCGCCGAGG
ATATCGACACCCATCTCGCGGCTTGGAACACCCTCTCCAGGACCATCAAG
GCCAAGGACGACCAGGGCATTCTGCACCGTATGGCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig65816:1801..2438+

>mRNA_H-elongata_contig65816.14168.1 ID=mRNA_H-elongata_contig65816.14168.1|Name=mRNA_H-elongata_contig65816.14168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig65816:1801..2438+ (Himanthalia elongata Himel1 dioecious)
GACCCTGAAGACGGCGCAAAGTTCAGGGAGTCATATCTGCCTCATATTAC
TGCACGTGGACCTAGCGTTACGGTGGGTACTGAGAGCGGTGCTGAGATTG
CAGTGGATAGTCTCAAGGGCGCTATAGGTGTCACCGCTGACGGGGCGCCC
GGGGAACCTGGTCACCGACTGATGGACTCGAGTGATTCTAGCGACGGGTC
TGATTCCAGCGAGGAGTCTGATTCGAGTGATGGATCTATCAAACCCGGGG
ATGCTGCCGCTCCTGTTGCTACTTTTGCTGCCGTTGCTACAACAGCTGTT
ACGTCCACTCCTCGAAAGGGCTTATCAAAAGAAATCCGTAGTACGGGCTC
GAGTGAGGCAGTGACGCATGTCAACGACTTCCCTCTTTTTGAGGGAGGGT
ATGATAACTTCGTGGCGTGGAAGAAACCCTTCCTCATGGTGGCGAAGCAG
TTCAATATCTTCGACGCGCTTACGAGCGGCGTCGACATCCCCGTGGCCGA
CGTGGATAAGTCGGTGCATCAACTACAAGAAGAAGGGTTTAGCGCCGAGG
ATATCGACACCCATCTCGCGGCTTGGAACACCCTCTCCAGGACCATCAAG
GCCAAGGACGACCAGGGCATTCTGCACCGTATGGCCGACCCTGAAGACGG
CGCAAAGTTCAGGGAGTCATATCTGCCTCATATTACTGCACGTGGACCTA
GCGTTACGGTGGGTACTGAGAGCGGTGCTGAGATTGCAGTGGATAGTCTC
AAGGGCGCTATAGGTGTCACCGCTGACGGGGCGCCCGGGGAACCTGGTCA
CCGACTGATGGACTCGAGTGATTCTAGCGACGGGTCTGATTCCAGCGAGG
AGTCTGATTCGAGTGATGGATCTATCAAACCCGGGGATGCTGCCGCTCCT
GTTGCTACTTTTGCTGCCGTTGCTACAACAGCTGTTACGTCCACTCCTCG
AAAGGGCTTATCAAAAGAAATCCGTAGTACGGGCTCGAGTGAGGCAGTGA
CGCATGTCAACGACTTCCCTCTTTTTGAGGGAGGGTATGATAACTTCGTG
GCGTGGAAGAAACCCTTCCTCATGGTGGCGAAGCAGTTCAATATCTTCGA
CGCGCTTACGAGCGGCGTCGACATCCCCGTGGCCGACGTGGATAAGTCGG
TGCATCAACTACAAGAAGAAGGGTTTAGCGCCGAGGATATCGACACCCAT
CTCGCGGCTTGGAACACCCTCTCCAGGACCATCAAGGCCAAGGACGACCA
GGGCATTCTGCACCGTATGGCC
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