mRNA_H-elongata_contig65802.14166.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65802.14166.1
Unique NamemRNA_H-elongata_contig65802.14166.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: D8LKP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.420e-38
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    4 QEGELNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGL 246
            +EGELNPALRFANVTFWWS +CG+QWL+   + E YILEQP LRF+DLATMAKVSVL+LDEKYHGWYLHCRSPY +A   +
Sbjct:  290 EEGELNPALRFANVTFWWSLICGLQWLVACLITERYILEQPELRFVDLATMAKVSVLVLDEKYHGWYLHCRSPYPRADVAM 370          
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: A0A835Z317_9STRA (Transmembrane protein 67-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z317_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.560e-21
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   16 LNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGL 246
            LN ALRFAN TF+W      QWL  W + E Y+ E P    +DLAT+AKVS+L+LDE +HGWY+HCRSPY +A   +
Sbjct:  273 LNAALRFANTTFFWLAFGAAQWLWRWAVGERYLGEPPEQLLVDLATLAKVSILVLDEPFHGWYVHCRSPYPRADVPM 349          
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: A0A1W0A6X7_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6X7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.680e-21
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    7 EGELNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGL 246
            +G  N  LRFANV FWW  +   QWL  W + E +I E   L+FID+ T+AKVS ++LDE+YHG+YLHCRSPY+ A   +
Sbjct:  665 KGSANEYLRFANVFFWWLVLTLSQWLWRWLIYERWITEPKHLKFIDVCTLAKVSCILLDEEYHGYYLHCRSPYAFADGTM 744          
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: A0A1V9ZL78_9STRA (Transmembrane protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZL78_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.060e-20
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   10 GELNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGL 246
            G  N  LRFANV FWW  +   QWL  W + E ++ E   L+FIDL T+AKVS ++LDE YHG+YLHCRSPY+ A   +
Sbjct:  708 GPPNEYLRFANVAFWWLVLVVSQWLWRWLIYERWVSEPRHLKFIDLCTLAKVSCVLLDEAYHGYYLHCRSPYAFADTSM 786          
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: A0A0P1AW11_PLAHL (Meckelin isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AW11_PLAHL)

HSP 1 Score: 93.6 bits (231), Expect = 1.980e-20
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 AQEGELNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGLG 249
            A E  LNP LRFANVT WW  +   Q L  W + E YI E     FIDL T++K+S++ LDE YHG+YLHCRSP++ A   +G
Sbjct:  762 AAEEHLNPYLRFANVTIWWLLISMCQRLWKWMIFERYIEEPREQLFIDLCTISKISLIFLDETYHGFYLHCRSPHAFADGSMG 844          
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: A0A812RAQ2_9DINO (Tmem67 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RAQ2_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 6.870e-20
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   16 LNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGL 246
            +NPAL+FAN  FWW  +   Q+++ WG+LE ++ E P LR++DL T+AK+S++ L  KY G+YLHC +PY  A   +
Sbjct:  644 INPALQFANNAFWWYVIAISQYILVWGILERFVSEPPTLRYLDLCTVAKISIICLPHKYAGFYLHCDAPYEFADCTM 720          
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: T0S4L0_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S4L0_SAPDV)

HSP 1 Score: 91.7 bits (226), Expect = 9.380e-20
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   10 GELNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGL 246
            G  N  LRFANV  WW+ +   QWL  W + E +I E   L F+DL T+AKVS ++LDE YHG+YLHCRSPY+ A   +
Sbjct:  727 GAPNEYLRFANVVAWWTVLTASQWLWRWLIYERWISEPRHLLFLDLCTLAKVSCVLLDEAYHGYYLHCRSPYAFADGSM 805          
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: G4YU91_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YU91_PHYSP)

HSP 1 Score: 91.3 bits (225), Expect = 1.280e-19
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 AQEGELNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGL 246
            A +G++NP LRFANV+ WW  +   Q L  WG+ E YI E     FIDL T++KVS   LDE YHG+YLHCRSP+  A   +
Sbjct:  646 ADDGQVNPYLRFANVSIWWLLIWVGQRLWKWGIYERYIDEPREQLFIDLCTVSKVSCFFLDETYHGFYLHCRSPHPFADGSM 727          
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: A0A067C9X5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C9X5_SAPPC)

HSP 1 Score: 90.9 bits (224), Expect = 1.750e-19
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   10 GELNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGL 246
            G  N  LRFANV  WW  +   QWL  W + E +I E   L F+DL T+AKVS ++LDE YHG+YLHCRSPY+ A   +
Sbjct:  700 GAPNEYLRFANVVAWWVVLTASQWLWRWLIYERWIAEPRHLLFLDLCTLAKVSCVLLDEAYHGYYLHCRSPYAFADGSM 778          
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Match: W2RCF9_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2RCF9_PHYPN)

HSP 1 Score: 89.4 bits (220), Expect = 6.050e-19
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 AQEGELNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLATMAKVSVLILDEKYHGWYLHCRSPYSKASAGL 246
            A + +LNP LRFANV+ WW FV   Q L  W + E YI E     FIDL T++KVS L LDE YHG+YLHCRSP+  A   +
Sbjct:  581 AADLQLNPYLRFANVSIWWLFVYVGQRLWKWMIFERYIDEPREQLFIDLCTVSKVSCLFLDETYHGFYLHCRSPHPFADGSM 662          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65802.14166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP1_ECTSI2.420e-3875.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z317_9STRA1.560e-2154.55Transmembrane protein 67-domain-containing protein... [more]
A0A1W0A6X7_9STRA5.680e-2152.50Transmembrane protein n=1 Tax=Thraustotheca clavat... [more]
A0A1V9ZL78_9STRA1.060e-2053.16Transmembrane protein n=1 Tax=Achlya hypogyna TaxI... [more]
A0A0P1AW11_PLAHL1.980e-2051.81Meckelin isoform x1 n=1 Tax=Plasmopara halstedii T... [more]
A0A812RAQ2_9DINO6.870e-2046.75Tmem67 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
T0S4L0_SAPDV9.380e-2051.90Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]
G4YU91_PHYSP1.280e-1951.22Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A067C9X5_SAPPC1.750e-1951.90Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
W2RCF9_PHYPN6.050e-1953.66Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65802contigH-elongata_contig65802:1923..2669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue3.6e-33
Seed eggNOG ortholog2880.D8LKP1
Preferred nameTMEM67
KEGG koko:K13525,ko:K19348
KEGG TC3.A.16.1
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00400,M00403
GOsGO:0001763,GO:0002009,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0005929,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007507,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009799,GO:0009855,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010639,GO:0010824,GO:0010826,GO:0010948,GO:0012505,GO:0012506,GO:0015630,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019941,GO:0022008,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030433,GO:0030659,GO:0031005,GO:0031090,GO:0031253,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032886,GO:0032991,GO:0033043,GO:0033554,GO:0034976,GO:0035239,GO:0035295,GO:0035845,GO:0035869,GO:0036038,GO:0036503,GO:0042175,GO:0042176,GO:0042221,GO:0042461,GO:0042995,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043632,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045724,GO:0045732,GO:0045786,GO:0045862,GO:0046530,GO:0046605,GO:0046606,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051493,GO:0051494,GO:0051603,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0051787,GO:0060170,GO:0060255,GO:0060271,GO:0060429,GO:0060491,GO:0060562,GO:0061136,GO:0061138,GO:0065007,GO:0070507,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0097708,GO:0097711,GO:0098588,GO:0098590,GO:0098827,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0140056,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1902017,GO:1902115,GO:1902117,GO:1902855,GO:1902857,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905515,GO:1905897,GO:1905898
EggNOG free text desc.negative regulation of centrosome duplication
EggNOG OGsKOG4611@1,KOG4611@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036,ko04131,ko04147
Hectar predicted targeting categorysignal peptide
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.5500112-CDS-H-elongata_contig65802:1922..20561622931045.5500112-CDS-H-elongata_contig65802:1922..2056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 1923..2056 +
1691679675.4902093-CDS-H-elongata_contig65802:1922..20561691679675.4902093-CDS-H-elongata_contig65802:1922..2056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 1923..2056 +
1622931045.5719259-CDS-H-elongata_contig65802:2554..26691622931045.5719259-CDS-H-elongata_contig65802:2554..2669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 2555..2669 +
1691679675.5050733-CDS-H-elongata_contig65802:2554..26691691679675.5050733-CDS-H-elongata_contig65802:2554..2669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65802 2555..2669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65802.14166.1prot_H-elongata_contig65802.14166.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65802 1923..2669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65802.14166.1

>prot_H-elongata_contig65802.14166.1 ID=prot_H-elongata_contig65802.14166.1|Name=mRNA_H-elongata_contig65802.14166.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
AQEGELNPALRFANVTFWWSFVCGMQWLITWGLLEPYILEQPALRFIDLA
TMAKVSVLILDEKYHGWYLHCRSPYSKASAGLG
back to top

mRNA from alignment at H-elongata_contig65802:1923..2669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65802.14166.1 ID=mRNA_H-elongata_contig65802.14166.1|Name=mRNA_H-elongata_contig65802.14166.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig65802:1923..2669+ (Himanthalia elongata Himel1 dioecious)
GCCCAGGAGGGGGAACTCAACCCAGCCCTTCGTTTCGCGAATGTCACTTT CTGGTGGAGCTTCGTCTGCGGCATGCAGTGGTTGATAACGTGGGGGTTGT TAGAGCCGTACATTCTCGAGCAGCCGGCGTTGAGGTGCGCATATACGCCG AACTCGTGTGTGCAACATATCCTTCTACAAGGGAAGTACTGCGTAAAGAT CTCGCTCATTCGGGGTTAACCGCCCGTCCATTGACAGTCTTTTTAAGGGG TTGAGCTTGAGCAGCTAAGAGAAAACGCGCCCCCTCCTCCCCCTGGGTAG AGTCGACGTGTCAGATGTGTGGCCATTTCAATCTCATTCAACCCTTTTTC GTCGATGTTATGTTAATCATATACATACATATGCTTTCTATATAGCAGCA AGACGATAAATGGACCTAGCCCTAAGAAACTCAGAGGGTGCATATGTTCT TTTTTCTGCTCTCTAACAGCTGCGATATAAAATTATGCGATGTTCGATTA TACGCTTATGAGAATATTCGATATTCGATATTCAATTTACGGTATGATTT ATTCGATTATGCTATGCTCGATATGCTACACACACTATGCGACAATCGAT GTGCGATATTCGATACTATGTTATATTCGAAGGTTCATTGATCTTGCTAC GATGGCGAAGGTGTCCGTTCTCATCCTGGACGAGAAGTACCACGGCTGGT ACCTCCATTGCCGCAGCCCTTATTCCAAGGCGAGCGCTGGACTAGGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig65802:1923..2669+

>mRNA_H-elongata_contig65802.14166.1 ID=mRNA_H-elongata_contig65802.14166.1|Name=mRNA_H-elongata_contig65802.14166.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig65802:1923..2669+ (Himanthalia elongata Himel1 dioecious)
GCCCAGGAGGGGGAACTCAACCCAGCCCTTCGTTTCGCGAATGTCACTTT
CTGGTGGAGCTTCGTCTGCGGCATGCAGTGGTTGATAACGTGGGGGTTGT
TAGAGCCGTACATTCTCGAGCAGCCGGCGTTGAGGCCCAGGAGGGGGAAC
TCAACCCAGCCCTTCGTTTCGCGAATGTCACTTTCTGGTGGAGCTTCGTC
TGCGGCATGCAGTGGTTGATAACGTGGGGGTTGTTAGAGCCGTACATTCT
CGAGCAGCCGGCGTTGAGGTTCATTGATCTTGCTACGATGGCGAAGGTGT
CCGTTCTCATCCTGGACGAGAAGTACCACGGCTGGTACCTCCATTGCCGC
AGCCCTTATTCCAAGGCGAGCGCTGGACTAGGCGTTCATTGATCTTGCTA
CGATGGCGAAGGTGTCCGTTCTCATCCTGGACGAGAAGTACCACGGCTGG
TACCTCCATTGCCGCAGCCCTTATTCCAAGGCGAGCGCTGGACTAGGC
back to top