mRNA_H-elongata_contig65797.14164.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65797.14164.1
Unique NamemRNA_H-elongata_contig65797.14164.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65797.14164.1 vs. uniprot
Match: D7FT29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT29_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 6.990e-56
Identity = 107/193 (55.44%), Postives = 122/193 (63.21%), Query Frame = 1 
Query:    1 MGYFLLLDATDQSITVCWEREAGVSTEAVQMKR----ADDG--------DGAE-----------------------------WTTLSDSLATSALRKRKLPPGTAYVFRRRSRQEQVREWGPWSEASEPFTTLSEGVKQQPPPAVKLREAGALVMEWTSVPEASGYEVQMSASGTRWETIAPSFGSTLLRKKG 456
            M  FLLLDATDQ+IT+CWER   VS E VQMK     A+D         DG+E                             W TLS SL +SALRK+KL PGT YVFRRR+R+++  EWGPWS+ SEPF TLSEG  Q   PAVKLREAGALVMEW +VP ASGYE+QMS SG+ W T+  SFGSTLLRKKG
Sbjct:    1 MATFLLLDATDQAITLCWERGPDVSVEEVQMKMKTTPANDQQRQQQEVKDGSEVGNEVAPSSGSXXXXXXXXXXXXXXXXXDWVTLSKSLGSSALRKKKLAPGTEYVFRRRARKQEEEEWGPWSKTSEPFRTLSEGEMQPSAPAVKLREAGALVMEWPAVPSASGYEIQMSTSGSEWCTLTASFGSTLLRKKG 193
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BLAST of mRNA_H-elongata_contig65797.14164.1 vs. uniprot
Match: A0A835YMB1_9STRA (Thioredoxin-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMB1_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.190e-18
Identity = 58/153 (37.91%), Postives = 84/153 (54.90%), Query Frame = 1 
Query:   13 LLLDATDQSITVCWEREAGVSTEAVQMKRADDGDGAEWTTLSDSLATSALRKRKLPPGTAYVFRRRSRQEQVREWGPWSEASEPFTTLSEGVKQ-QPPPAVKLREAGALVMEWTSVPEASGYEVQMS----ASGTRWETIAPSFGSTLLRKKG 456
            +LLDA   +++V W  E G +    Q++      G EWT LS +L ++ LRK+ L PG  Y FR R+  + + E G  SEASE FTTLSEG  + Q  P +   EA AL ++W +V     YE+QM+         W T+A +  + + +KKG
Sbjct:    5 VLLDAGADTLSVHWRAEKGAALYEAQLEDTSSSPG-EWTLLSSTLQSTRLRKKNLVPGRTYRFRVRA-IDSLGESGRLSEASEAFTTLSEGTNRIQESPQMVRSEAEALTVQWKAVDACEAYELQMALWVEGEALAWTTVAAAVKAPIAKKKG 155
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BLAST of mRNA_H-elongata_contig65797.14164.1 vs. uniprot
Match: A0A7S4K6K6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6K6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.920e-15
Identity = 57/157 (36.31%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:   13 LLLDATDQSITVCWEREAGVSTEAVQMKRADDGD-GAEWTTLSDSLATSALRKRKLPPGTAYVFRRRSRQEQVREWGPWSEASEPFTTLSEGVKQQPPPAVKLREAGALVMEW---TSVPEAS----GYEVQMSAS--GTRWETIAPSFGSTLLRKK 453
            +LLDATD S+TV W   AG     +Q +R  D + G ++ TLS++L ++  RKR LPP +A+ FR RS      EW    E+    T   + ++ + P A       A+V  W   T   EA     GYE+QM  +  G  W T+AP  G   +RKK
Sbjct:    6 VLLDATDDSLTVSWPSVAGADRYVLQYRRESDSEEGGDYETLSENLKSTQARKRNLPPESAFSFRARSSSGADGEWIGHEESFRLLTAAEQALRMEAPTATADGNQAAVV-RWKAPTGGAEAGTSVDGYELQMRENDGGRGWCTVAPRLGGIEVRKK 161
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BLAST of mRNA_H-elongata_contig65797.14164.1 vs. uniprot
Match: L1IDF0_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IDF0_GUITC)

HSP 1 Score: 71.6 bits (174), Expect = 7.000e-12
Identity = 43/152 (28.29%), Postives = 77/152 (50.66%), Query Frame = 1 
Query:    1 MGYFLLLDATDQSITVCWEREAGVSTEAVQMKRADDGDGAEWTTLSDSLATSALRKRKLPPGTAYVFRRRSRQEQVREWGPWSEASEPFTTLSEGVKQQPPPAVKLREAGALVMEWTSVPEASGYEVQM-SASGTRWETIAPSFGSTLLRKK 453
            M + ++ D   +++T+ W +        VQ+K+ + GD   +TT+SDSL ++ +RK+ L P T Y  R R R     +W  + E     T   + VK+   P V  R+  ++ ++W + P+   Y V++ S     W TI+    + ++RKK
Sbjct:    1 MQWCVVHDVEAEAVTLSWSKVPNAVKYEVQIKQEEGGD---FTTISDSLTSTLVRKKNLKPNTEYFARVRHRD--ALDWSGFCEPVSFHTLAGQDVKRLEHPQVVSRDGESITLQWPTAPDCESYTVEIRSDKDPTWRTISDHLKNNIVRKK 147
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BLAST of mRNA_H-elongata_contig65797.14164.1 vs. uniprot
Match: A0A7S0E8P9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E8P9_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 6.750e-9
Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:   85 VQMKRADDGDGAEWTTLSDSLATSALRKRKLPPGTAYVFRRRSRQEQVREWGPWSEASEPFTTLSEG-VKQQPPPAVKLREAGALVMEWTSVPEASGYEVQM-SASGTRWETIAPSFGSTLLRKK 453
            VQ+K+ D GD   +TT+SDSL ++ +RK+ L P T Y  R R R     +W  + E   PF TL+   V +   P +  ++A +L ++W +VP+   Y V+M S     W  I+    + ++RKK
Sbjct:    6 VQIKQEDGGD---FTTISDSLTSTLVRKKNLKPNTQYFARVRHRD--ALDWSNFCEPV-PFQTLTGAEVNRLENPKIVSKDAESLTVQWPTVPDCESYTVEMRSDKEPLWRPISDHLKNNIVRKK 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65797.14164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FT29_ECTSI6.990e-5655.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMB1_9STRA1.190e-1837.91Thioredoxin-like-domain-containing protein n=1 Tax... [more]
A0A7S4K6K6_9STRA1.920e-1536.31Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
L1IDF0_GUITC7.000e-1228.29Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S0E8P9_9CRYP6.750e-934.40Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65797contigH-elongata_contig65797:218..1981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue3.9e-46
Seed eggNOG ortholog2880.D7FT29
KEGG koko:K17609
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
EC1.8.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-04_002600.1
Exons3
Model size456
Cds size456
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65797.14164.1prot_H-elongata_contig65797.14164.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65797 218..1981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.2990956-CDS-H-elongata_contig65797:217..3341622931045.2990956-CDS-H-elongata_contig65797:217..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65797 218..334 -
1691679675.421624-CDS-H-elongata_contig65797:217..3341691679675.421624-CDS-H-elongata_contig65797:217..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65797 218..334 -
1622931045.312855-CDS-H-elongata_contig65797:935..10431622931045.312855-CDS-H-elongata_contig65797:935..1043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65797 936..1043 -
1691679675.4341254-CDS-H-elongata_contig65797:935..10431691679675.4341254-CDS-H-elongata_contig65797:935..1043Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65797 936..1043 -
1622931045.3294022-CDS-H-elongata_contig65797:1750..19811622931045.3294022-CDS-H-elongata_contig65797:1750..1981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65797 1751..1981 -
1691679675.4443634-CDS-H-elongata_contig65797:1750..19811691679675.4443634-CDS-H-elongata_contig65797:1750..1981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65797 1751..1981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65797.14164.1

>prot_H-elongata_contig65797.14164.1 ID=prot_H-elongata_contig65797.14164.1|Name=mRNA_H-elongata_contig65797.14164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MGYFLLLDATDQSITVCWEREAGVSTEAVQMKRADDGDGAEWTTLSDSLA
TSALRKRKLPPGTAYVFRRRSRQEQVREWGPWSEASEPFTTLSEGVKQQP
PPAVKLREAGALVMEWTSVPEASGYEVQMSASGTRWETIAPSFGSTLLRK
KG
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mRNA from alignment at H-elongata_contig65797:218..1981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65797.14164.1 ID=mRNA_H-elongata_contig65797.14164.1|Name=mRNA_H-elongata_contig65797.14164.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1764bp|location=Sequence derived from alignment at H-elongata_contig65797:218..1981- (Himanthalia elongata Himel1 dioecious)
ATGGGATATTTCTTACTCCTGGATGCCACGGACCAATCCATCACCGTTTG
CTGGGAGCGTGAGGCGGGCGTATCGACAGAAGCGGTGCAGATGAAGCGGG
CTGATGACGGCGACGGCGCCGAGTGGACAACCCTCTCCGACAGCCTCGCC
ACCAGCGCCCTGCGAAAAAGAAAACTCCCCCCGGGGACCGCTTACGTCTT
CCGTCGGCGTTCGAGACAGGAACAGGTACGAGTCAGGCCGCTGATGATTT
TTCACCAGGCAGTGAAAACAGCCAAGATACCGTCCGTCACCAAGTATTTA
TCATCCCACCTCTCTATAACAATTAATTCTGCCTTGTTAGTCTACAGCCA
GCATACCGCGGCTATTTTCTCTGTCGCCTTCGTTGAAGATCGAGGTCGCG
AAATTCCTCCTAAAATCGCTCTATGACCAAGCTTTTCGGGGGTTCCGGAC
CCCCCCCACCCATCCATCTTCGCCCTTGAGTTGCATCTCCTACAGACAAT
CGACTATATAGCTCTTCCCCGAGCTTGACACTCTAACCGCGATCTCGGCG
CTTCTTGGGTTTTAAGAGTGGAACTCCTGTAGTGTAAGGCAAAAAAGACC
TTCGAGGTGTGTAGATGGTAACCCTGTCGCCGACCAGATGGCGATGTGAT
GCGCCAACCAAAGGCCAATGAACCGCTAACGTGCCGGAGTTGCGTGAAAC
GTTTCACCGCCGGTATCATATCGAGTCGGCAAGGAAGGTCCAAGAGAAGC
ATATAGGGGGACATGACTCGAGAGGCCACACAAGGTGGTGGAAATCCCTT
TCACGTCCTCCTTGCGGTCTCCTGGACTCGACTTGTTCCTTTGTCGATTA
TAAAAATGAACCTATATTTATCATGTCCAGATTCCTCTTGTCCTTTATAT
ACATACTATATACGGATGCGCGCTCGTAATTTATCCAGGAATGGGGCCCT
TGGTCTGAAGCGTCCGAGCCGTTCACGACGCTCTCCGAAGGCGTAAAGCA
ACAACCTCCTCCAGCGGTGAAGCTTCGAGAGGCGGGTGCCCTCGTGGTGA
GAGGAGCCAAGCGAAGGCGGTAGCAGTCACGAAGTCCACTCTTTTCTGCG
TTGTTGTCGTCTCGCTTCGGCGTTTTTTTTGGGGCCCCGCGAGCGGTTGT
GCCACCTCCTCGGGGGAATGCCAGCGCAAATCACCTCTTCGCCGACCCTC
TCGCTACCTCGGTACAGGTGGTGTGTTGCTCTATTAGTAACTGTAGTCAC
CTTCGTCCATCTGTGTAGCCGCCGTAACGGCTGCTGCCTAGGGAGAGAAG
CAACGATCGGCAATAATATATACATAGATGTGTATACTTCTATATATATA
GAGAGAGAAAGGTAACTGCTGCCCCGGAACCAGCAAGAAAGCCGCAGAAC
GCACAGTATTCTCGGCTGCGACCAAGAGCCGCGGCGTGCTCCACAGCTGC
ACCCTCCCGACACGGACAAGGCTATCTCTTGCCACTATCATCGCATCCCG
GCACTCTATCCAGTTACACCGCGGCCATATTTTTTCGTGCCGCGCCCTGC
CCCGCCTCTCTGCCCTTTCGCCGATGCCTCCAAAACACGGCGGACGACTG
AACGCGTCGGGTGACCGACCTCAATGGGTGGGCTATCTCTCTCCCAGATG
GAGTGGACGTCGGTTCCCGAGGCGAGCGGATACGAGGTTCAGATGAGCGC
GTCGGGCACACGGTGGGAGACAATCGCCCCCTCCTTTGGGTCAACGCTCC
TACGCAAGAAAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig65797:218..1981-

>mRNA_H-elongata_contig65797.14164.1 ID=mRNA_H-elongata_contig65797.14164.1|Name=mRNA_H-elongata_contig65797.14164.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig65797:218..1981- (Himanthalia elongata Himel1 dioecious)
ATGGGATATTTCTTACTCCTGGATGCCACGGACCAATCCATCACCGTTTG
CTGGGAGCGTGAGGCGGGCGTATCGACAGAAGCGGTGCAGATGAAGCGGG
CTGATGACGGCGACGGCGCCGAGTGGACAACCCTCTCCGACAGCCTCGCC
ACCAGCGCCCTGCGAAAAAGAAAACTCCCCCCGGGGACCGCTTACGTCTT
CCGTCGGCGTTCGAGACAGGAACAGGTACGAATGGGATATTTCTTACTCC
TGGATGCCACGGACCAATCCATCACCGTTTGCTGGGAGCGTGAGGCGGGC
GTATCGACAGAAGCGGTGCAGATGAAGCGGGCTGATGACGGCGACGGCGC
CGAGTGGACAACCCTCTCCGACAGCCTCGCCACCAGCGCCCTGCGAAAAA
GAAAACTCCCCCCGGGGACCGCTTACGTCTTCCGTCGGCGTTCGAGACAG
GAACAGGTACGAGAATGGGGCCCTTGGTCTGAAGCGTCCGAGCCGTTCAC
GACGCTCTCCGAAGGCGTAAAGCAACAACCTCCTCCAGCGGTGAAGCTTC
GAGAGGCGGGTGCCCTCGTGGAATGGGGCCCTTGGTCTGAAGCGTCCGAG
CCGTTCACGACGCTCTCCGAAGGCGTAAAGCAACAACCTCCTCCAGCGGT
GAAGCTTCGAGAGGCGGGTGCCCTCGTGATGGAGTGGACGTCGGTTCCCG
AGGCGAGCGGATACGAGGTTCAGATGAGCGCGTCGGGCACACGGTGGGAG
ACAATCGCCCCCTCCTTTGGGTCAACGCTCCTACGCAAGAAAGGTATGGA
GTGGACGTCGGTTCCCGAGGCGAGCGGATACGAGGTTCAGATGAGCGCGT
CGGGCACACGGTGGGAGACAATCGCCCCCTCCTTTGGGTCAACGCTCCTA
CGCAAGAAAGGT
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