mRNA_H-elongata_contig65784.14163.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65784.14163.1
Unique NamemRNA_H-elongata_contig65784.14163.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: D8LGP1_ECTSI (MutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP1_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.820e-25
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFALQV 174
            +ALVDAG+RVALTTHYTQLKELAA D RFGVSAMQFVDGRPTYRL+KGAVGESFALQV
Sbjct:  485 EALVDAGSRVALTTHYTQLKELAATDERFGVSAMQFVDGRPTYRLIKGAVGESFALQV 542
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: A0A6H5JAB7_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.370e-21
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFAL 168
            +ALVDAG+RVALTTHYTQLKELAA D RFGVSAMQFVDGRPTYRL+KGAV E   L
Sbjct:  583 EALVDAGSRVALTTHYTQLKELAATDERFGVSAMQFVDGRPTYRLIKGAVAERLEL 638
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: A0A835YZI9_9STRA (Muts protein-like protein 1B muts-like ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.880e-20
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFALQV 174
            +AL+D+GARVALTTHY QLKELAA D RF V+AMQFV+GRPTYRL+ GA+GESFAL V
Sbjct:  495 EALLDSGARVALTTHYLQLKELAAGDARFKVAAMQFVEGRPTYRLMAGAIGESFALAV 552
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: A0A7S3LC47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LC47_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.490e-18
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFALQV 174
            +ALVD G+RVA+TTHY QLK+LAA D+RF V  MQFV+GRPTY+L+ G VGESFAL V
Sbjct:   36 EALVDTGSRVAITTHYMQLKQLAAADKRFAVGGMQFVNGRPTYKLLPGTVGESFALAV 93
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: A0A7S1BBM6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBM6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.970e-17
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFALQV 174
            + L++AGARVA+TTH+ +LK+LAA D RF V+ MQFVDGRPTYRL  GAVGESFAL V
Sbjct:  474 EELLEAGARVAVTTHFLELKQLAASDHRFAVAGMQFVDGRPTYRLQPGAVGESFALAV 531
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: A0A1Z5KRL6_FISSO (DNA mismatch repair protein MutS2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRL6_FISSO)

HSP 1 Score: 84.0 bits (206), Expect = 1.980e-17
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFALQVGPHV 186
            +AL++ G+RVA+TTHYTQLK+LA  D RF V+ MQFV GRPTY+L+ G VGESFAL V   V
Sbjct:  631 EALLETGSRVAITTHYTQLKQLAVADERFAVAGMQFVRGRPTYKLLPGTVGESFALSVAERV 692
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: A0A7S0A271_9STRA (Hypothetical protein n=2 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A271_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.350e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFALQV 174
            +ALVD GARVA+TTHY +LK+LA+ D RF V+ M+FV+ RPTYRL+ G +GESFAL V
Sbjct:   39 EALVDVGARVAITTHYLELKQLASSDTRFSVAGMEFVNNRPTYRLIPGQIGESFALSV 96
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: B7G4P6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4P6_PHATC)

HSP 1 Score: 82.0 bits (201), Expect = 9.400e-17
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFALQV 174
            +A+++ GARVA+TTHY QLK+LAA D RF V+ MQFV GRPTY+L+ G VGESFAL V
Sbjct:  672 EAILETGARVAITTHYMQLKQLAASDDRFSVAGMQFVQGRPTYKLLPGTVGESFALAV 729
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: A0A7S1V4Y0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4Y0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.260e-16
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFALQV 174
            +A+V+ GARV +TTH+ QLK+LAA D RF V AMQF+ GRPTY+L  GAVGESFAL V
Sbjct:  419 EAMVETGARVVITTHFLQLKQLAAGDPRFNVGAMQFIGGRPTYKLELGAVGESFALSV 476
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BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Match: A0A4D9D3J8_9STRA (Smr domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.270e-16
Identity = 37/58 (63.79%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAVGESFALQV 174
            +AL++ GARVA+TTHY QLKELA +D RF V AM+F++G+PTYR  +GA+GES+AL+V
Sbjct:  542 EALLETGARVAITTHYLQLKELAQKDDRFTVGAMEFLNGKPTYRFREGAIGESYALEV 599
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65784.14163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP1_ECTSI2.820e-2591.38MutS protein homolog 1B MutS-like ATPases involved... [more]
A0A6H5JAB7_9PHAE4.370e-2183.93DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A835YZI9_9STRA9.880e-2077.59Muts protein-like protein 1B muts-like ATPase n=1 ... [more]
A0A7S3LC47_9STRA3.490e-1870.69Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S1BBM6_9STRA1.970e-1770.69Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5KRL6_FISSO1.980e-1764.52DNA mismatch repair protein MutS2 n=2 Tax=Fistulif... [more]
A0A7S0A271_9STRA8.350e-1765.52Hypothetical protein n=2 Tax=Rhizosolenia setigera... [more]
B7G4P6_PHATC9.400e-1767.24Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1V4Y0_9STRA3.260e-1667.24Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A4D9D3J8_9STRA3.270e-1663.79Smr domain-containing protein n=2 Tax=Monodopsidac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65784contigH-elongata_contig65784:2309..2494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D8LGP1
KEGG koko:K07456
KEGG Pathwayko03430,map03430
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.DNA mismatch repair protein
EggNOG OGs2QRQR@2759,COG1193@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931045.2551246-CDS-H-elongata_contig65784:2308..24941622931045.2551246-CDS-H-elongata_contig65784:2308..2494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65784 2309..2494 +
1691679675.3984723-CDS-H-elongata_contig65784:2308..24941691679675.3984723-CDS-H-elongata_contig65784:2308..2494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65784 2309..2494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65784.14163.1prot_H-elongata_contig65784.14163.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65784 2309..2494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65784.14163.1

>prot_H-elongata_contig65784.14163.1 ID=prot_H-elongata_contig65784.14163.1|Name=mRNA_H-elongata_contig65784.14163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
QALVDAGARVALTTHYTQLKELAARDRRFGVSAMQFVDGRPTYRLVKGAV
GESFALQVGPHV
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mRNA from alignment at H-elongata_contig65784:2309..2494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65784.14163.1 ID=mRNA_H-elongata_contig65784.14163.1|Name=mRNA_H-elongata_contig65784.14163.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig65784:2309..2494+ (Himanthalia elongata Himel1 dioecious)
CAGGCGTTGGTCGATGCCGGTGCACGCGTGGCTTTAACAACGCACTACAC
GCAGCTCAAGGAGCTAGCGGCGAGGGATCGTCGCTTTGGCGTGTCGGCGA
TGCAGTTCGTGGACGGCCGTCCCACGTACCGCCTCGTCAAGGGGGCCGTG
GGGGAATCCTTTGCCCTGCAGGTTGGTCCTCACGTT
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Coding sequence (CDS) from alignment at H-elongata_contig65784:2309..2494+

>mRNA_H-elongata_contig65784.14163.1 ID=mRNA_H-elongata_contig65784.14163.1|Name=mRNA_H-elongata_contig65784.14163.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig65784:2309..2494+ (Himanthalia elongata Himel1 dioecious)
CAGGCGTTGGTCGATGCCGGTGCACGCGTGGCTTTAACAACGCACTACAC
GCAGCTCAAGGAGCTAGCGGCGAGGGATCGTCGCTTTGGCGTGTCGGCGA
TGCAGTTCGTGGACGGCCGTCCCACGTACCGCCTCGTCAAGGGGGCCGTG
GGGGAATCCTTTGCCCTGCAGGTTGGTCCTCACGTTCAGGCGTTGGTCGA
TGCCGGTGCACGCGTGGCTTTAACAACGCACTACACGCAGCTCAAGGAGC
TAGCGGCGAGGGATCGTCGCTTTGGCGTGTCGGCGATGCAGTTCGTGGAC
GGCCGTCCCACGTACCGCCTCGTCAAGGGGGCCGTGGGGGAATCCTTTGC
CCTGCAGGTTGGTCCTCACGTT
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