mRNA_H-elongata_contig118342.1416.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118342.1416.1
Unique NamemRNA_H-elongata_contig118342.1416.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118342.1416.1 vs. uniprot
Match: D8LLL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL9_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 3.570e-51
Identity = 86/116 (74.14%), Postives = 92/116 (79.31%), Query Frame = 1 
Query:    1 QDFMAVNLTHGELRRRLLTVDKMPFDAWRQVEESMGKEAAKRFADSGITGVTPGKVRDAKCLHAHVADALMRGRGANAIGHRTLELLATRGVQADGGDRCREQCDYRVREAADGWR 348
            +DFMAVNL HG LRRRL+T DKM       VEE++GKE A RF DSGITGVTPGKVRDAKCLHAHVADALMRGR ANAIG  TLELL  RGV+ DGGDRC EQC+Y V E AD WR
Sbjct:   65 EDFMAVNLAHGMLRRRLVTPDKMGL-----VEETIGKEGAGRFLDSGITGVTPGKVRDAKCLHAHVADALMRGRSANAIGRATLELLEARGVRTDGGDRCSEQCNYLVEETADSWR 175
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BLAST of mRNA_H-elongata_contig118342.1416.1 vs. uniprot
Match: A0A6H5L3F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F4_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.200e-48
Identity = 84/116 (72.41%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    1 QDFMAVNLTHGELRRRLLTVDKMPFDAWRQVEESMGKEAAKRFADSGITGVTPGKVRDAKCLHAHVADALMRGRGANAIGHRTLELLATRGVQADGGDRCREQCDYRVREAADGWR 348
            +DFMAVNL HG LRRRL+T +K+       VEE++GKE A+RF DSGITGVT GKVRDAKCLHAHVADALMRGR ANAIG  TLELL  RGV+ DGGDRC EQC+YRV E AD WR
Sbjct:  221 EDFMAVNLAHGMLRRRLVTPEKLGM-----VEETIGKEGAERFLDSGITGVTTGKVRDAKCLHAHVADALMRGRSANAIGRATLELLEARGVRTDGGDRCSEQCNYRVEETADSWR 331
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BLAST of mRNA_H-elongata_contig118342.1416.1 vs. uniprot
Match: A0A8J2S7V2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7V2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.790e-15
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:   16 VNLTHGELRRRLLTVDKMPFDAWRQVEESMGKEAAKRFADSGITGVTPGKVRDAKCLHAHVADALMRGRGANAIGHRTLELLATRGVQADGGDRCREQCDYRVREAADGWR 348
            VN  H   R+ ++  + +      + E  +G +  +R  DSGITG+TP K+ D KCLHA +AD L+     NA+G + LE L  RGV   G ++C EQC   V    DGWR
Sbjct:  124 VNERHAVTRKSMVQGEALA-----RAEARLGADTVRRVLDSGITGLTPSKLDDVKCLHAQLADELLSRD--NAVGKKVLEGLEARGVDPTGSEKCGEQCSGCV----DGWR 223
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BLAST of mRNA_H-elongata_contig118342.1416.1 vs. uniprot
Match: A0A7S2ASG1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ASG1_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.780e-12
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:  106 GKEAAKRFADSGITGVTPGKVRDAKCLHAHVADALMRGRG-------ANAIGHRTLELLATRGVQAD--GGDRCREQCDYRVREAADGWR 348
            G E A+ F +SGI G++P K+ D KCLHAH+AD L+RG         A A+  R + L  T   Q    G  +C +QCD+   E    W+
Sbjct:   25 GSEGAQAFMNSGIAGMSPSKLDDVKCLHAHLADYLLRGSTNKIGNHVATALSERNVGLAGTEEAQTSSCGSGKCCDQCDWGRAETESSWK 114
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BLAST of mRNA_H-elongata_contig118342.1416.1 vs. uniprot
Match: A0A7S0GR68_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GR68_MICPS)

HSP 1 Score: 62.8 bits (151), Expect = 2.230e-10
Identity = 34/68 (50.00%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:  109 KEAAKRFADSGITGVTPGKVRDAKCLHAHVADALMRGRGANAIGHRTLELLATRGVQADGGDRCREQC 312
            K +AKR    G  G         KCLHAHV DAL+RGR ANAIGH  LE LA  GV+ +G   C   C
Sbjct:   40 KTSAKREDGGGWRG------NGVKCLHAHVGDALVRGRAANAIGHVVLEKLARDGVETNGSAECWRAC 101
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BLAST of mRNA_H-elongata_contig118342.1416.1 vs. uniprot
Match: A4SB46_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4SB46_OSTLU)

HSP 1 Score: 57.8 bits (138), Expect = 1.570e-7
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  178 KCLHAHVADALMRGRGANAIGHRTLELLATR-GVQADGGDRCREQCDYRVREA 333
            KCLHAH+AD L+RGRG NA+G   L++L TR GV  DG   C  +C   V E+
Sbjct:  197 KCLHAHIADTLVRGRGKNAVGAFALDVLRTRRGVDVDGTPECWRRCAPGVAES 249
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BLAST of mRNA_H-elongata_contig118342.1416.1 vs. uniprot
Match: A0A096PAX5_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PAX5_OSTTA)

HSP 1 Score: 56.6 bits (135), Expect = 2.520e-7
Identity = 34/85 (40.00%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:   76 DAWRQVEESMGKEAAKRFADSGITGVTPGKVRDAK------CLHAHVADALMRGRGANAIGHRTLELLATRGVQADGGDRCREQC 312
            DA R   ES    A      +G+ GVT   VR AK      CLHAH+AD L+RGRG N +G    + L  RG   +G + C  +C
Sbjct:  112 DAARDGPESDAGRADFIVNHTGLVGVTLRDVRRAKTWKIVKCLHAHLADFLVRGRGKNPVGGLVYDSLVERGFPVNGTETCARRC 196
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BLAST of mRNA_H-elongata_contig118342.1416.1 vs. uniprot
Match: A0A7S4SSG3_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SSG3_9DINO)

HSP 1 Score: 51.2 bits (121), Expect = 4.480e-5
Identity = 29/86 (33.72%), Postives = 42/86 (48.84%), Query Frame = 1 
Query:   91 VEESMGKEAAKRFADSGITGVTPGKVRDAKCLHAHVADALMRGRGANAIGHRTLELLATRGVQADGGDRCREQCDYRVREAADGWR 348
            V    G++       +G+  + P   +D KCLHA VAD L+RG G N I  + L  +  +G+  +G D C + CD  V      WR
Sbjct:  219 VRAHYGEQTFAVAMGAGLASMRPDS-KDVKCLHAQVADELVRG-GGNLIALQALRDIEDQGILPEGTDECCDNCDVHVPLEQARWR 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118342.1416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LLL9_ECTSI3.570e-5174.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3F4_9PHAE1.200e-4872.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2S7V2_9STRA3.790e-1539.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2ASG1_9STRA9.780e-1238.89Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0GR68_MICPS2.230e-1050.00Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A4SB46_OSTLU1.570e-752.83Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A096PAX5_OSTTA2.520e-740.00Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
A0A7S4SSG3_9DINO4.480e-533.72Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118342contigH-elongata_contig118342:640..1746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue2.1e-39
Seed eggNOG ortholog2880.D8LLL9
EggNOG free text desc.Protein of unknown function (DUF501)
EggNOG OGs2C2QW@1,2SDB4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF501
Ec32 orthologEc-04_005280.1
Exons3
Model size351
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118342.1416.1prot_H-elongata_contig118342.1416.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118342 649..1746 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.9710555-UTR-H-elongata_contig118342:639..6481622929690.9710555-UTR-H-elongata_contig118342:639..648Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118342 640..648 +
1691679120.3970528-UTR-H-elongata_contig118342:639..6481691679120.3970528-UTR-H-elongata_contig118342:639..648Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118342 640..648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.9893303-CDS-H-elongata_contig118342:648..7151622929690.9893303-CDS-H-elongata_contig118342:648..715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118342 649..715 +
1691679120.4192128-CDS-H-elongata_contig118342:648..7151691679120.4192128-CDS-H-elongata_contig118342:648..715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118342 649..715 +
1622929691.0061238-CDS-H-elongata_contig118342:836..9251622929691.0061238-CDS-H-elongata_contig118342:836..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118342 837..925 +
1691679120.4271615-CDS-H-elongata_contig118342:836..9251691679120.4271615-CDS-H-elongata_contig118342:836..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118342 837..925 +
1622929691.0188568-CDS-H-elongata_contig118342:1560..17461622929691.0188568-CDS-H-elongata_contig118342:1560..1746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118342 1561..1746 +
1691679120.4394407-CDS-H-elongata_contig118342:1560..17461691679120.4394407-CDS-H-elongata_contig118342:1560..1746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118342 1561..1746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118342.1416.1

>prot_H-elongata_contig118342.1416.1 ID=prot_H-elongata_contig118342.1416.1|Name=mRNA_H-elongata_contig118342.1416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MAVNLTHGELRRRLLTVDKMPFDAWRQVEESMGKEAAKRFADSGITGVTP
GKVRDAKCLHAHVADALMRGRGANAIGHRTLELLATRGVQADGGDRCREQ
CDYRVREAADGWR*
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mRNA from alignment at H-elongata_contig118342:640..1746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118342.1416.1 ID=mRNA_H-elongata_contig118342.1416.1|Name=mRNA_H-elongata_contig118342.1416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1107bp|location=Sequence derived from alignment at H-elongata_contig118342:640..1746+ (Himanthalia elongata Himel1 dioecious)
CAGGATTTCATGGCGGTAAACCTTACCCACGGCGAGCTTCGGCGCCGGCT
GTTGACGGTTGACAAGATGCCCTTCGGTTGACAAGATGCCCTTCGGTTGA
CAAGATGCGACAGGTGGAAGAGATGCCCTTCGGTTGACAAGATGCCCTTC
GGTTGACAAGATGCGACAGGTGGAAGAGATGCCCTTCGGTTGACAAGATG
CATGGCGACAGGTGGAAGAAAGCATGGGCAAGGAGGCCGCCAAGCGCTTC
GCCGACAGCGGCATCACGGGGGTAACGCCTGGGAAGGTGATCGCGCGCGC
GCGCCTCGGTTTCCTTCTGACACCGCTTCCCGGCGTCTCTTGTCGTCTCG
AGCGACGTGCTAGAACAGAACATGACAAGAGAGGGTGAATCGAAAGCGGT
GACATGTGGCGGAGGAAAAGGCGGTACATGCTTCCTAGGCGCTCTGTGTC
GATGGGAAGGACAGAAAAAAACGTCGCACAACCACGTTGACGAACCGGTA
TCCATCCGTGACATCCCGTATCCCCAAATCGCCAGATGTTGCTTCTCTAT
CGGCATTACCTATTTGCCCCCCCCCTCCCCCGCATTCCGCATCCCGCCGG
TTGCTCGCCTCTGTCTATACCGCAAGAGACCGAGTTTCGTTTGGGGGAAT
GTGAGGCACGTTAGGTTCGCCCCCTTTGAGGGGAAATAGAGTTTCTTGCT
ATGGTTGCATGCTACCACTACTACTACTACTACTACTACCATTATTACTA
CTACTACTACTATTACTACTACTACTACTACTACTACTACTACTACTATT
ACTACTACTACTACTACTACTGCTACTCTTTGCGATTGTCCGACTGTTCA
CCTTTCTCCCTCTCTCTCTCCCCTCTCTATATATTATATCTCGCCATCTC
CCGTCGATCGCTTGGTCTCAGGTGAGGGACGCCAAGTGTCTCCACGCGCA
CGTGGCCGATGCTCTCATGCGCGGCCGAGGAGCGAATGCGATAGGACATA
GGACGCTCGAGCTGTTGGCGACGCGCGGGGTGCAGGCGGACGGCGGCGAT
CGGTGCCGCGAGCAGTGCGACTATCGCGTCCGGGAAGCCGCGGACGGGTG
GAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig118342:640..1746+

>mRNA_H-elongata_contig118342.1416.1 ID=mRNA_H-elongata_contig118342.1416.1|Name=mRNA_H-elongata_contig118342.1416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig118342:640..1746+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTAAACCTTACCCACGGCGAGCTTCGGCGCCGGCTGTTGACGGT
TGACAAGATGCCCTTCGATGGCGGTAAACCTTACCCACGGCGAGCTTCGG
CGCCGGCTGTTGACGGTTGACAAGATGCCCTTCGATGCATGGCGACAGGT
GGAAGAAAGCATGGGCAAGGAGGCCGCCAAGCGCTTCGCCGACAGCGGCA
TCACGGGGGTAACGCCTGGGAAGATGCATGGCGACAGGTGGAAGAAAGCA
TGGGCAAGGAGGCCGCCAAGCGCTTCGCCGACAGCGGCATCACGGGGGTA
ACGCCTGGGAAGGTGAGGGACGCCAAGTGTCTCCACGCGCACGTGGCCGA
TGCTCTCATGCGCGGCCGAGGAGCGAATGCGATAGGACATAGGACGCTCG
AGCTGTTGGCGACGCGCGGGGTGCAGGCGGACGGCGGCGATCGGTGCCGC
GAGCAGTGCGACTATCGCGTCCGGGAAGCCGCGGACGGGTGGAGGTGAGT
GAGGGACGCCAAGTGTCTCCACGCGCACGTGGCCGATGCTCTCATGCGCG
GCCGAGGAGCGAATGCGATAGGACATAGGACGCTCGAGCTGTTGGCGACG
CGCGGGGTGCAGGCGGACGGCGGCGATCGGTGCCGCGAGCAGTGCGACTA
TCGCGTCCGGGAAGCCGCGGACGGGTGGAGGTGA
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