mRNA_H-elongata_contig65765.14159.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65765.14159.1
Unique NamemRNA_H-elongata_contig65765.14159.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65765.14159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65765contigH-elongata_contig65765:1380..2222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size603
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65765.14159.1prot_H-elongata_contig65765.14159.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65765 1398..2012 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.889808-UTR-H-elongata_contig65765:1379..13971622931044.889808-UTR-H-elongata_contig65765:1379..1397Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65765 1380..1397 -
1691679675.2423444-UTR-H-elongata_contig65765:1379..13971691679675.2423444-UTR-H-elongata_contig65765:1379..1397Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65765 1380..1397 -
1622931044.944162-UTR-H-elongata_contig65765:2012..22221622931044.944162-UTR-H-elongata_contig65765:2012..2222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65765 2013..2222 -
1691679675.274338-UTR-H-elongata_contig65765:2012..22221691679675.274338-UTR-H-elongata_contig65765:2012..2222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65765 2013..2222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.9056528-CDS-H-elongata_contig65765:1397..16631622931044.9056528-CDS-H-elongata_contig65765:1397..1663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65765 1398..1663 -
1691679675.2512708-CDS-H-elongata_contig65765:1397..16631691679675.2512708-CDS-H-elongata_contig65765:1397..1663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65765 1398..1663 -
1622931044.9233027-CDS-H-elongata_contig65765:1903..20121622931044.9233027-CDS-H-elongata_contig65765:1903..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65765 1904..2012 -
1691679675.2661386-CDS-H-elongata_contig65765:1903..20121691679675.2661386-CDS-H-elongata_contig65765:1903..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65765 1904..2012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65765.14159.1

>prot_H-elongata_contig65765.14159.1 ID=prot_H-elongata_contig65765.14159.1|Name=mRNA_H-elongata_contig65765.14159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MTSMTRPCFTVVHSLINTKHTQKACRPNGCHLDLIYWNFVFLKVSLFAMI
KPYPAASCGKIKVKVEVTVTVRVINTCFIRNTRTQEAKPQRCRLKVNYQR
CQASRLSVKGLGCPRTKHPLSPGI*
back to top

mRNA from alignment at H-elongata_contig65765:1380..2222-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65765.14159.1 ID=mRNA_H-elongata_contig65765.14159.1|Name=mRNA_H-elongata_contig65765.14159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig65765:1380..2222- (Himanthalia elongata Himel1 dioecious)
TTTCTTTATTTATTTTTCCCTGTTCAGCAGACCACGAGCGGGATTGGCCG
TGTAAAGTAGTTTTTCGGGTTGGCAACCAATGCGCTGAATGTGAGAAACA
ACAACAACTGTAGAGAGTATGTCCCCTTTGTCAAGAATGGTCAGAGGTTT
TCGTAACAAATACCGGTATCATTGATTCCCCAGTCAGACGACCGATTCGA
GTAGATTAGAATGACCAGCATGACAAGGCCGTGTTTCACAGTTGTGCACA
GCTTAATAAATACCAAGCACACGCAAAAAGCATGCAGACCTAACGGTTGC
CACCTCGATCTTATCTACTGTGAACGGTGATAAGCGAGAGCAGCAACCGG
CATCACCATGTCATGTAAATAAATAACCCTAACCCTACAGAAGAATCTGT
AAATAATACGATGGTACTACTACTTTCACTACCGAAACAACCCTAACCCT
ACCGTAAAGTAATGAGAGTCGATGAGACTGGGCAATGAGTCCATGGGATT
TCAGTCTTTTCTAAAGAGAATAAATGGGAATTATGGAAACTGATTCAGAA
CCCATGAAGGGAACTTCGTTTTTCTGAAAGTGAGCCTCTTCGCCATGATC
AAACCGTACCCTGCCGCGTCATGTGGTAAGATTAAAGTTAAAGTTGAAGT
TACGGTTACGGTTAGGGTTATTAATACATGTTTCATTCGTAACACACGAA
CTCAGGAAGCTAAACCTCAAAGATGTCGGTTGAAGGTCAACTATCAACGC
TGTCAAGCGTCAAGGTTGTCTGTCAAGGGGTTGGGCTGTCCTAGGACGAA
ACATCCCCTATCCCCTGGTATATAACGCCTCATTATATATATA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig65765:1380..2222-

>mRNA_H-elongata_contig65765.14159.1 ID=mRNA_H-elongata_contig65765.14159.1|Name=mRNA_H-elongata_contig65765.14159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig65765:1380..2222- (Himanthalia elongata Himel1 dioecious)
ATGACCAGCATGACAAGGCCGTGTTTCACAGTTGTGCACAGCTTAATAAA
TACCAAGCACACGCAAAAAGCATGCAGACCTAACGGTTGCCACCTCGATC
TTATCTACTATGACCAGCATGACAAGGCCGTGTTTCACAGTTGTGCACAG
CTTAATAAATACCAAGCACACGCAAAAAGCATGCAGACCTAACGGTTGCC
ACCTCGATCTTATCTACTGGAACTTCGTTTTTCTGAAAGTGAGCCTCTTC
GCCATGATCAAACCGTACCCTGCCGCGTCATGTGGTAAGATTAAAGTTAA
AGTTGAAGTTACGGTTACGGTTAGGGTTATTAATACATGTTTCATTCGTA
ACACACGAACTCAGGAAGCTAAACCTCAAAGATGTCGGTTGAAGGTCAAC
TATCAACGCTGTCAAGCGTCAAGGTTGTCTGTCAAGGGGTTGGGCTGTCC
TAGGACGAAACATCCCCTATCCCCTGGTATATAAGGAACTTCGTTTTTCT
GAAAGTGAGCCTCTTCGCCATGATCAAACCGTACCCTGCCGCGTCATGTG
GTAAGATTAAAGTTAAAGTTGAAGTTACGGTTACGGTTAGGGTTATTAAT
ACATGTTTCATTCGTAACACACGAACTCAGGAAGCTAAACCTCAAAGATG
TCGGTTGAAGGTCAACTATCAACGCTGTCAAGCGTCAAGGTTGTCTGTCA
AGGGGTTGGGCTGTCCTAGGACGAAACATCCCCTATCCCCTGGTATATAA
back to top