mRNA_H-elongata_contig65738.14158.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65738.14158.1
Unique NamemRNA_H-elongata_contig65738.14158.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65738.14158.1 vs. uniprot
Match: A0A6H5JI95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI95_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.010e-24
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 2 
Query:  968 PEVTEALASLEKAEAVVGIDLPSQDKGPPDADATCVLCPVPRGAFLRADKGNGTVAWCHCLCALSKGLLIEDRIV 1192
            PEV  A A+LE+AE  VG+DLPS DKGPPDA+A C+LC VPRGA LRA++G   +AWCHCLCA SKGLLIEDR+V
Sbjct:  833 PEVAAARAALEEAEECVGVDLPSLDKGPPDAEADCILCHVPRGALLRAERGTKGLAWCHCLCAFSKGLLIEDRVV 907
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BLAST of mRNA_H-elongata_contig65738.14158.1 vs. uniprot
Match: D7FWF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF0_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 6.160e-24
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 2 
Query:  968 PEVTEALASLEKAEAVVGIDLPSQDKGPPDADATCVLCPVPRGAFLRADKGNGTVAWCHCLCALSKGLLIEDRIV 1192
            PEV+ A A+LE+AE  VG+DLPS DKGPPDA+A C+LC VPRGA LRA++G   + WCHCLCA SKGLLIEDR+V
Sbjct:  348 PEVSAARAALEEAEECVGVDLPSLDKGPPDAEADCILCHVPRGALLRAERGTKGLGWCHCLCAFSKGLLIEDRVV 422
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65738.14158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI95_9PHAE5.010e-2470.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWF0_ECTSI6.160e-2469.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65738contigH-elongata_contig65738:139..2557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, FYVE/PHD-type
Ec32 orthologEc-09_003920.2
Exons3
Model size1552
Cds size1170
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65738.14158.1prot_H-elongata_contig65738.14158.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65738 763..2526 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.7203953-UTR-H-elongata_contig65738:138..2871622931044.7203953-UTR-H-elongata_contig65738:138..287Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65738 139..287 -
1691679675.1826162-UTR-H-elongata_contig65738:138..2871691679675.1826162-UTR-H-elongata_contig65738:138..287Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65738 139..287 -
1622931044.733947-UTR-H-elongata_contig65738:560..7621622931044.733947-UTR-H-elongata_contig65738:560..762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65738 561..762 -
1691679675.1946833-UTR-H-elongata_contig65738:560..7621691679675.1946833-UTR-H-elongata_contig65738:560..762Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65738 561..762 -
1622931044.8553786-UTR-H-elongata_contig65738:2526..25571622931044.8553786-UTR-H-elongata_contig65738:2526..2557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65738 2527..2557 -
1691679675.2294164-UTR-H-elongata_contig65738:2526..25571691679675.2294164-UTR-H-elongata_contig65738:2526..2557Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65738 2527..2557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931044.7475197-CDS-H-elongata_contig65738:762..7741622931044.7475197-CDS-H-elongata_contig65738:762..774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65738 763..774 -
1691679675.2079678-CDS-H-elongata_contig65738:762..7741691679675.2079678-CDS-H-elongata_contig65738:762..774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65738 763..774 -
1622931044.763432-CDS-H-elongata_contig65738:1368..25261622931044.763432-CDS-H-elongata_contig65738:1368..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65738 1369..2526 -
1691679675.2198591-CDS-H-elongata_contig65738:1368..25261691679675.2198591-CDS-H-elongata_contig65738:1368..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65738 1369..2526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65738.14158.1

>prot_H-elongata_contig65738.14158.1 ID=prot_H-elongata_contig65738.14158.1|Name=mRNA_H-elongata_contig65738.14158.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=390bp
MIDGVVAGERARAGTACKPNGHLRLDVTTTSGEKMPEALFSPAEKEALEK
GEWAPTSSPAVETAPVVLDNVEAGWDMAVVAAAAGVTMVKEKTAVGRGGP
HHTDSGSAFANGARLDYLPNGFVTADGRNELRRGTPAPLAHLSPSGSEGT
ADATKARAEAKMKVNVLKRGGHHAKKRSWDEISTQVNGGCAGAIAASGRT
AAVAGVESEIIGLRRQHSSGMPGTAEEAAASLSLAAEAAISSRNARSLSP
ARVVRHPVACGKKRSSMSSVTARSKAAAESKYHRGGGSGDNHDTMALTKH
RLLERATAFAGVPEVTEALASLEKAEAVVGIDLPSQDKGPPDADATCVLC
PVPRGAFLRADKGNGTVAWCHCLCALSKGLLIEDRIVAA*
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mRNA from alignment at H-elongata_contig65738:139..2557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65738.14158.1 ID=mRNA_H-elongata_contig65738.14158.1|Name=mRNA_H-elongata_contig65738.14158.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2419bp|location=Sequence derived from alignment at H-elongata_contig65738:139..2557- (Himanthalia elongata Himel1 dioecious)
CGAAGCAGTGGGGGTTGGAGCGGGAACGGGAATGATAGATGGGGTGGTCG
CCGGAGAACGAGCGAGAGCAGGGACTGCTTGCAAGCCAAACGGTCATTTA
CGACTGGACGTAACAACAACTTCGGGAGAGAAAATGCCCGAGGCGCTCTT
CTCCCCGGCGGAGAAGGAGGCTTTGGAGAAGGGAGAGTGGGCCCCGACCT
CGTCGCCTGCGGTCGAGACGGCGCCCGTAGTGTTGGATAATGTTGAGGCC
GGGTGGGATATGGCCGTGGTGGCGGCGGCGGCGGGGGTGACGATGGTGAA
AGAGAAGACGGCGGTGGGACGTGGAGGCCCTCATCATACGGACAGCGGAA
GCGCGTTCGCGAACGGCGCGCGGTTGGACTATCTGCCTAACGGGTTCGTC
ACGGCGGATGGAAGAAATGAACTTCGTCGTGGCACTCCGGCTCCGCTGGC
GCATCTGTCACCTTCGGGAAGCGAGGGGACTGCGGACGCCACAAAGGCTC
GGGCGGAGGCGAAGATGAAAGTGAACGTGCTCAAGCGCGGCGGGCACCAT
GCCAAGAAGCGTAGCTGGGACGAAATTTCCACGCAGGTGAACGGCGGATG
CGCAGGTGCAATAGCCGCGAGTGGAAGAACGGCGGCGGTGGCAGGTGTAG
AAAGCGAAATCATTGGATTGCGTAGGCAGCATAGTTCGGGGATGCCCGGA
ACAGCCGAAGAAGCAGCAGCGTCGTTGTCACTAGCGGCGGAGGCGGCAAT
TTCCTCCAGAAACGCTCGATCCCTTTCTCCAGCTAGAGTTGTCCGACACC
CCGTGGCTTGTGGTAAGAAGCGGTCATCGATGTCGTCAGTGACAGCACGA
TCGAAAGCTGCAGCCGAGAGCAAGTACCATCGTGGCGGTGGCAGCGGTGA
TAATCACGACACGATGGCGCTCACAAAGCACCGCTTGCTCGAGCGCGCTA
CCGCGTTCGCGGGCGTTCCGGAGGTCACGGAGGCGTTGGCCTCCCTCGAG
AAGGCGGAGGCGGTGGTCGGCATCGACCTGCCTTCGCAGGACAAAGGCCC
CCCCGACGCCGACGCCACATGTGTTTTATGTCCGGTGCCGCGGGGGGCCT
TCCTGAGGGCAGACAAGGGCAATGGAACCGTGGCGTGGTGCCACTGCCTG
TGTGCGCTCTCGAAGGGGCTCTTGATCGAAGACAGAATCGTCAAGGTGAG
TCAGTACCAGGAAGGCAAACGAGGTCGGGTTGGTGTGGTTTGGTGTACCC
TTTTACGGTGAGGGTGGGCTTCATCGTGGAAGCTGCGCCGATGCCGGTCG
GCTTCCCTCTCCCGCTTCTTGGTGGGGTTAGCATTATAAATACCTGGTAC
GAAATATAAAGTGTTGTTTGTACCGTAGGACGAGTCATTGGATACCGTAG
GACCGCGCGTCCTGGCTTGAAAGCTGAGCGCACCTCTATTTGTGATGTGG
TCGTGAATTATGTTTTCCCTAACCTATGCGTTGCGTCGAGTTCTCATTCT
TGGGACAACCTGAACCCCATGCGCGCCCGCTCGCCAGGCCTCACTTTTGT
CTTATTCGTTGACTTGCGAAAATATGATGAGTTTCCGTCTACATGGACGG
AAAATGTAAAACTATATATATATATATATATATATATATAGCCATCCCCC
CCGCCCCCCCTTTGTCGTATATAATTTGTCATATCAATACTTCCCTTCCT
ATTTCTACGGCTGCTGCAACTGAAGACGAAGGGTCACATCAAGGGCGGGG
GTGGGACCTGCAGCAAGTGCCGCAAAGGCCCAGGTGGCGGCTTGATCCTC
TGTTCCAAGGAGGGCTGCACTTCGTCTTTCCACCCTACTTGCGGCAAGCT
CTGGGGGGGAAGCGCCGTGCGAGGCCCCCACCTGCACCCGGATGAATGGA
TCGCGCGATGTCGAAGACACGCCGAGCCTACCCCGCATGAGGGAGACCAC
GGGTACAATCCGGTCACGGCCCTCATGCCCGTCAAGGAAGTTTATAAGTG
AGTGGCAGAGCGAGGTCTGCGGGAGGTTTATAGCTCGTAGCAATGTGACA
AAATGTTGGCTCTGGTATTGAATAAAAAAACGCGAAACAAAAACTAAATA
AAAATAAAAACAAATATTCGATTCTAAGACTTGTTTTTCATTTTTCAAAA
GCGCCAAGCAGTCATGTTTTTTTTTGTCCTCATGTCGGGACACATGCAAC
ACTGGCCTTTTTGTCGACGTTTTTCTTTGAGAAATCTCTGTCTCTTTACT
TCAAACTCTCGTTCAAGCAGGACGTCTGCGAGGGCCACCGTGAAGGGTTC
CGCCTTGTTAGATGCTCCGTGCCGGGGTCGAGAGTCTGCGCCAGAGTCCG
GGCCAGGGGGCAGTGGGGGGAGTTCGAGCGGGTACAGAGTGGATAAGGAA
ATATTGAAATACCGGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig65738:139..2557-

>mRNA_H-elongata_contig65738.14158.1 ID=mRNA_H-elongata_contig65738.14158.1|Name=mRNA_H-elongata_contig65738.14158.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2340bp|location=Sequence derived from alignment at H-elongata_contig65738:139..2557- (Himanthalia elongata Himel1 dioecious)
ATGATAGATGGGGTGGTCGCCGGAGAACGAGCGAGAGCAGGGACTGCTTG
CAAGCCAAACGGTCATTTACGACTGGACGTAACAACAACTTCGGGAGAGA
AAATGCCCGAGGCGCTCTTCTCCCCGGCGGAGAAGGAGGCTTTGGAGAAG
GGAGAGTGGGCCCCGACCTCGTCGCCTGCGGTCGAGACGGCGCCCGTAGT
GTTGGATAATGTTGAGGCCGGGTGGGATATGGCCGTGGTGGCGGCGGCGG
CGGGGGTGACGATGGTGAAAGAGAAGACGGCGGTGGGACGTGGAGGCCCT
CATCATACGGACAGCGGAAGCGCGTTCGCGAACGGCGCGCGGTTGGACTA
TCTGCCTAACGGGTTCGTCACGGCGGATGGAAGAAATGAACTTCGTCGTG
GCACTCCGGCTCCGCTGGCGCATCTGTCACCTTCGGGAAGCGAGGGGACT
GCGGACGCCACAAAGGCTCGGGCGGAGGCGAAGATGAAAGTGAACGTGCT
CAAGCGCGGCGGGCACCATGCCAAGAAGCGTAGCTGGGACGAAATTTCCA
CGCAGGTGAACGGCGGATGCGCAGGTGCAATAGCCGCGAGTGGAAGAACG
GCGGCGGTGGCAGGTGTAGAAAGCGAAATCATTGGATTGCGTAGGCAGCA
TAGTTCGGGGATGCCCGGAACAGCCGAAGAAGCAGCAGCGTCGTTGTCAC
TAGCGGCGGAGGCGGCAATTTCCTCCAGAAACGCTCGATCCCTTTCTCCA
GCTAGAGTTGTCCGACACCCCGTGGCTTGTGGTAAGAAGCGGTCATCGAT
GTCGTCAGTGACAGCACGATCGAAAGCTGCAGCCGAGAGCAAGTACCATC
GTGGCGGTGGCAGCGGTGATAATCACGACACGATGGCGCTCACAAAGCAC
CGCTTGCTCGAGCGCGCTACCGCGTTCGCGGGCGTTCCGGAGGTCACGGA
GGCGTTGGCCTCCCTCGAGAAGGCGGAGGCGGTGGTCGGCATCGACCTGC
CTTCGCAGGACAAAGGCCCCCCCGACGCCGACGCCACATGTGTTTTATGT
CCGGTGCCGCGGGGGGCCTTCCTGAGGGCAGACAAGGGCAATGGAACCGT
GGCGTGGTGCCACTGCCTGTGTGCGCTCTCGAAGGGGCTCTTGATCGAAG
ACAGAATCATGATAGATGGGGTGGTCGCCGGAGAACGAGCGAGAGCAGGG
ACTGCTTGCAAGCCAAACGGTCATTTACGACTGGACGTAACAACAACTTC
GGGAGAGAAAATGCCCGAGGCGCTCTTCTCCCCGGCGGAGAAGGAGGCTT
TGGAGAAGGGAGAGTGGGCCCCGACCTCGTCGCCTGCGGTCGAGACGGCG
CCCGTAGTGTTGGATAATGTTGAGGCCGGGTGGGATATGGCCGTGGTGGC
GGCGGCGGCGGGGGTGACGATGGTGAAAGAGAAGACGGCGGTGGGACGTG
GAGGCCCTCATCATACGGACAGCGGAAGCGCGTTCGCGAACGGCGCGCGG
TTGGACTATCTGCCTAACGGGTTCGTCACGGCGGATGGAAGAAATGAACT
TCGTCGTGGCACTCCGGCTCCGCTGGCGCATCTGTCACCTTCGGGAAGCG
AGGGGACTGCGGACGCCACAAAGGCTCGGGCGGAGGCGAAGATGAAAGTG
AACGTGCTCAAGCGCGGCGGGCACCATGCCAAGAAGCGTAGCTGGGACGA
AATTTCCACGCAGGTGAACGGCGGATGCGCAGGTGCAATAGCCGCGAGTG
GAAGAACGGCGGCGGTGGCAGGTGTAGAAAGCGAAATCATTGGATTGCGT
AGGCAGCATAGTTCGGGGATGCCCGGAACAGCCGAAGAAGCAGCAGCGTC
GTTGTCACTAGCGGCGGAGGCGGCAATTTCCTCCAGAAACGCTCGATCCC
TTTCTCCAGCTAGAGTTGTCCGACACCCCGTGGCTTGTGGTAAGAAGCGG
TCATCGATGTCGTCAGTGACAGCACGATCGAAAGCTGCAGCCGAGAGCAA
GTACCATCGTGGCGGTGGCAGCGGTGATAATCACGACACGATGGCGCTCA
CAAAGCACCGCTTGCTCGAGCGCGCTACCGCGTTCGCGGGCGTTCCGGAG
GTCACGGAGGCGTTGGCCTCCCTCGAGAAGGCGGAGGCGGTGGTCGGCAT
CGACCTGCCTTCGCAGGACAAAGGCCCCCCCGACGCCGACGCCACATGTG
TTTTATGTCCGGTGCCGCGGGGGGCCTTCCTGAGGGCAGACAAGGGCAAT
GGAACCGTGGCGTGGTGCCACTGCCTGTGTGCGCTCTCGAAGGGGCTCTT
GATCGAAGACAGAATCGTGGCGGCTTGAGTGGCGGCTTGA
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