mRNA_H-elongata_contig65693.14151.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65693.14151.1
Unique NamemRNA_H-elongata_contig65693.14151.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65693.14151.1 vs. uniprot
Match: D7FT51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT51_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.960e-34
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:  166 GGQRAIVNISLDFCDPDERFFHGIRHLAAHSFLEDAAGSELSPLVDLVVAQGAVGTVLSTEGEDDAVFGFVTVMPLRYLARDNRCAQVRALF 441
            G Q+ +V++ LDFCDP ERFFHGIR L AHS+L++AAG+ LSPLVDL VAQGAVGTVLST+ +DDAVFGFVT +PL+YLA+++ C Q    F
Sbjct:  189 GDQQTVVDVCLDFCDPHERFFHGIRALLAHSYLQEAAGAGLSPLVDLAVAQGAVGTVLSTDADDDAVFGFVTALPLKYLAKEHECVQAVTKF 280
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BLAST of mRNA_H-elongata_contig65693.14151.1 vs. uniprot
Match: A0A6V1VD28_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VD28_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 4.390e-12
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:  172 QRAIVNISLDFCDPDERFFHGIRHLAAHSFLED---AAGSELSPLVDLVVAQGAVGTVLSTEGEDDAVFGFVTVMPLRYLARDNRCAQVRALFATK 450
            ++ IVN+S DFCDP+E+ FH +R      FLE    + G  +S L D++VAQ +VGT++ +E ED  VF F+TV+ L++        Q+    A+K
Sbjct:   91 EKGIVNVSFDFCDPNEKHFHSVR-----KFLETFTPSKGLNISDLADIIVAQASVGTLVCSEDED--VFAFITVLNLQFRKDSRSIKQITDTLASK 179
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BLAST of mRNA_H-elongata_contig65693.14151.1 vs. uniprot
Match: A0A1Z5J744_FISSO (Protein BCP1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J744_FISSO)

HSP 1 Score: 58.9 bits (141), Expect = 2.230e-7
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  184 VNISLDFCDPDERFFHGIRHLAAHSFLEDAAGSELSPLVDLVVAQGAVGTVLSTEGEDDA-VFGFVTVM 387
            + +   FCD DE+FFHG++ L  +S       +  S LVDL+++   VGTV+STEG++D  VFGF +V+
Sbjct:   89 LQVEFLFCDMDEKFFHGVKSLLNNS--STIYQTHASSLVDLMISNVQVGTVVSTEGDEDGNVFGFASVL 155
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BLAST of mRNA_H-elongata_contig65693.14151.1 vs. uniprot
Match: A0A0V0QA93_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QA93_PSEPJ)

HSP 1 Score: 55.5 bits (132), Expect = 3.980e-6
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:  181 IVNISLDFCDPDERFFHGIRHLAAHSFLEDAAGSELSPLVDLVVAQGAVGTVLSTEGEDDA----VFGFVTVMPL 393
            +VN+ L+F DP+ER FH I++L  + +L D      S L DLV+ Q  VGT++  +  D+     +FGF T MPL
Sbjct:   94 MVNVDLNFYDPNERQFHSIKNLV-NGYL-DGLSYNSSDLADLVIKQVQVGTMVGIDDPDEQDQQNIFGFTTTMPL 166
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BLAST of mRNA_H-elongata_contig65693.14151.1 vs. uniprot
Match: A0A7J7PK01_9CHLO (p21-C-terminal region-binding protein-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PK01_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 7.210e-6
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  184 VNISLDFCDPDERFFHGIRHLAAHSFLEDAAGSELSPLVDLVVAQGAVGTVLSTEGEDDAVFGFVTVMPLRYLARDNRCAQVR 432
            +N+   F DP E  FHG++ L  H++L D    + SPLVD ++AQ +VGTV+ T GED+     +TV+  +   +    +Q+R
Sbjct:   78 INVDFQFFDPKESDFHGLKALL-HTYL-DGQQYDSSPLVDTIIAQASVGTVVRT-GEDEDPIAVMTVLNTQQHKQAGFMSQIR 157
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BLAST of mRNA_H-elongata_contig65693.14151.1 vs. uniprot
Match: A0A383VH97_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VH97_TETOB)

HSP 1 Score: 53.9 bits (128), Expect = 1.340e-5
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:  184 VNISLDFCDPDERFFHGIRHLAAHSFLEDAAGSELSPLVDLVVAQGAVGTVLSTEGEDDAVFGFVTVM 387
            +N+   F DP E  FHG++ L  H++L D    + SPLVD ++AQ +VGTV+ T GED+     +TV+
Sbjct:   71 INVDFQFFDPKESDFHGLKALL-HTYL-DGQQYDSSPLVDTIIAQASVGTVVRT-GEDEDPIAVMTVL 135
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BLAST of mRNA_H-elongata_contig65693.14151.1 vs. uniprot
Match: A0A7S2VXM2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VXM2_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.670e-5
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:  181 IVNISLDFCDPDERFFHGIRHLAAHSFLEDAAGSELSPLVDLVVAQGAVGTVLSTEGEDDAVFGFVTVM 387
            I+ +  +FCD DE++FHGI+    H   E       S L D++V   +VGTV+S +   D VFG  +V+
Sbjct:   64 IIQVDFNFCDMDEKYFHGIK---THLLTEAMYAPFSSGLADMMVENVSVGTVISCDDGQDNVFGLASVL 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65693.14151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FT51_ECTSI1.960e-3466.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1VD28_HETAK4.390e-1239.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5J744_FISSO2.230e-743.48Protein BCP1 n=1 Tax=Fistulifera solaris TaxID=151... [more]
A0A0V0QA93_PSEPJ3.980e-641.33Uncharacterized protein n=1 Tax=Pseudocohnilembus ... [more]
A0A7J7PK01_9CHLO7.210e-637.35p21-C-terminal region-binding protein-domain-conta... [more]
A0A383VH97_TETOB1.340e-542.65Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S2VXM2_9STRA1.670e-537.68Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65693contigH-elongata_contig65693:134..1081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size453
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65693.14151.1prot_H-elongata_contig65693.14151.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65693 208..999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.6513863-UTR-H-elongata_contig65693:133..2071622931043.6513863-UTR-H-elongata_contig65693:133..207Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65693 134..207 -
1691679674.633231-UTR-H-elongata_contig65693:133..2071691679674.633231-UTR-H-elongata_contig65693:133..207Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65693 134..207 -
1622931043.7133512-UTR-H-elongata_contig65693:999..10811622931043.7133512-UTR-H-elongata_contig65693:999..1081Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65693 1000..1081 -
1691679674.6680815-UTR-H-elongata_contig65693:999..10811691679674.6680815-UTR-H-elongata_contig65693:999..1081Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65693 1000..1081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.6721184-CDS-H-elongata_contig65693:207..3471622931043.6721184-CDS-H-elongata_contig65693:207..347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65693 208..347 -
1691679674.6437426-CDS-H-elongata_contig65693:207..3471691679674.6437426-CDS-H-elongata_contig65693:207..347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65693 208..347 -
1622931043.6912563-CDS-H-elongata_contig65693:842..9991622931043.6912563-CDS-H-elongata_contig65693:842..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65693 843..999 -
1691679674.657765-CDS-H-elongata_contig65693:842..9991691679674.657765-CDS-H-elongata_contig65693:842..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65693 843..999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65693.14151.1

>prot_H-elongata_contig65693.14151.1 ID=prot_H-elongata_contig65693.14151.1|Name=mRNA_H-elongata_contig65693.14151.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MMIVRIAVRVTAKMRRRRRKTWREKTEEGASGPLLISASISATRTNDSST
ALGIWRHTRSWKTRQARNCPLWWTWSSLREQWARCYRQKERMTPCSAS*
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mRNA from alignment at H-elongata_contig65693:134..1081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65693.14151.1 ID=mRNA_H-elongata_contig65693.14151.1|Name=mRNA_H-elongata_contig65693.14151.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=948bp|location=Sequence derived from alignment at H-elongata_contig65693:134..1081- (Himanthalia elongata Himel1 dioecious)
TCGGAGGGCGAGGGAAGCAGTGACGATAGCAGCAGCGACGAGATAAATCT
GGCGGGAGCTTTGATGCGAGAGGGCACGGTGGATGATGATAGTGAGGATA
GCGGTAAGGGTCACGGCCAAAATGAGGAGAAGGAGGAGAAAAACATGGAG
GGAGAAGACGGAGGAGGGGGCCAGCGGGCCATTGTTAATATCAGCCTCGA
TTTCTGCGACCCGGACGAACGATTCTTCCACGGCATTAGGTAAATGATGA
CGGCGTCGTGCCTGTCCCCCGTCTGCGCCGCGGAGGAGACACAAATGTAA
CGCGTATCCTCCCGACCATTACGCGCCTAGACACCGAGCGTTTTTCTCAC
CGATCCCCGGGGGTGCGGTGTGCGCGCCGGCTTTTTTGAAAAATTGCTTT
GGTGTCTCCGGTGGTTGTAGGTACAGTAACTGCAGCCCTCGTGTTTGTCC
CCATCAAGCCGAAAATCGACGCCCTACCGCCCCAAGATGACGATGTCGCC
ACAGCAAGAAGACGCGCTTCTGTTTGACTAGAGGCTCCGTAGGTACGACG
AACAAGAGCATGAGGAGGAGCTGCACAAATATTAAAAATACCAACAAACA
AAACAAGCTAAAGCATGCCGTATCTTTTTTGTGTGTGTGTGTGTGTGTGC
ATCGTGTACGGCGCGCGTCCTGCCTTTGCCTCTATCTCTGTCCGACGAAT
GTATTTCGTCTCGCCGGTGTCCGACCCAAGCAAGGCATCTGGCGGCACAC
TCGTTCCTGGAAGACGCGGCAGGCTCGGAACTGTCCCCTCTGGTGGACCT
GGTCGTCGCTCAGGGAGCAGTGGGCACGGTGCTATCGACAGAAGGAGAGG
ATGACGCCGTGTTCGGCTTCGTGACGGTGATGCCGCTGCGATATCTTGCT
AGGGACAACCGTTGCGCGCAGGTTCGTGCGCTTTTTGCGACAAAACGC
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Coding sequence (CDS) from alignment at H-elongata_contig65693:134..1081-

>mRNA_H-elongata_contig65693.14151.1 ID=mRNA_H-elongata_contig65693.14151.1|Name=mRNA_H-elongata_contig65693.14151.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig65693:134..1081- (Himanthalia elongata Himel1 dioecious)
ATGATGATAGTGAGGATAGCGGTAAGGGTCACGGCCAAAATGAGGAGAAG
GAGGAGAAAAACATGGAGGGAGAAGACGGAGGAGGGGGCCAGCGGGCCAT
TGTTAATATCAGCCTCGATTTCTGCGACCCGGACGAACGATTCTTCCACG
GCATTAGATGATGATAGTGAGGATAGCGGTAAGGGTCACGGCCAAAATGA
GGAGAAGGAGGAGAAAAACATGGAGGGAGAAGACGGAGGAGGGGGCCAGC
GGGCCATTGTTAATATCAGCCTCGATTTCTGCGACCCGGACGAACGATTC
TTCCACGGCATTAGGCATCTGGCGGCACACTCGTTCCTGGAAGACGCGGC
AGGCTCGGAACTGTCCCCTCTGGTGGACCTGGTCGTCGCTCAGGGAGCAG
TGGGCACGGTGCTATCGACAGAAGGAGAGGATGACGCCGTGTTCGGCTTC
GTGAGCATCTGGCGGCACACTCGTTCCTGGAAGACGCGGCAGGCTCGGAA
CTGTCCCCTCTGGTGGACCTGGTCGTCGCTCAGGGAGCAGTGGGCACGGT
GCTATCGACAGAAGGAGAGGATGACGCCGTGTTCGGCTTCGTGA
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