mRNA_H-elongata_contig65681.14150.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65681.14150.1
Unique NamemRNA_H-elongata_contig65681.14150.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65681.14150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65681contigH-elongata_contig65681:2353..3326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size974
Cds size489
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.5969167-UTR-H-elongata_contig65681:2352..28371622931043.5969167-UTR-H-elongata_contig65681:2352..2837Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65681 2353..2837 +
1691679674.6147807-UTR-H-elongata_contig65681:2352..28371691679674.6147807-UTR-H-elongata_contig65681:2352..2837Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65681 2353..2837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.613039-CDS-H-elongata_contig65681:2837..33261622931043.613039-CDS-H-elongata_contig65681:2837..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65681 2838..3326 +
1691679674.6243787-CDS-H-elongata_contig65681:2837..33261691679674.6243787-CDS-H-elongata_contig65681:2837..3326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65681 2838..3326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65681.14150.1prot_H-elongata_contig65681.14150.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65681 2838..3326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65681.14150.1

>prot_H-elongata_contig65681.14150.1 ID=prot_H-elongata_contig65681.14150.1|Name=mRNA_H-elongata_contig65681.14150.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MGGDPAISNTCTTLCCVLSLPRAPPASSTPRDGEPSPVVLAAPTSISTPP
SDRPAPVVATAAVIPPRPGSPSPIDPPCLAASFPASSPRLVPLSSPTASG
ADGALVGWSPEGKGRGSPVKAALMSRLEATSSGVSPFEFKREVFAPASTR
TRTAWRFLLKCL*
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mRNA from alignment at H-elongata_contig65681:2353..3326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65681.14150.1 ID=mRNA_H-elongata_contig65681.14150.1|Name=mRNA_H-elongata_contig65681.14150.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=974bp|location=Sequence derived from alignment at H-elongata_contig65681:2353..3326+ (Himanthalia elongata Himel1 dioecious)
ACCAAACTTGTTTTTAATTATTATTTATTGCACACCCGAAAATGAAACAT
TATAATCCCTAAACTTTTTTCCCTCGCCATGAGTGGTCGAAACGAAGTTT
TGTTATTTTCCCTTAACACGTTTCCCCAGAGGGATGAAATAAACAATATT
ATTTTAACACATATGATAGCACACTTCCAACATCAACATGAATTAGCTAT
AATAAGCTCTTGGGGACACCACCGGAACAAAAAAAACGCAACGGAACACG
CGCTCAAACCACCTCGTCTTCACCGTCACCCTCCAAGTGCGATAAACTAA
TCATTTTCCGAGCCGCTGTGGCCTCCGCCTGAGCAAGCTTCCGTTTTTTT
CGGCGCCTTTCCGCCAGGCTGCCGACTCTCTCGACCACCTTCCCGCCTCC
TTCGTGTAAACTCTTGGATGTGTCCCCTGACGCCGCGGCCTTTTCCGCCA
CTCCTGTCCCATCCCCAACTGATTCGCATGCTGCAATGGGTGGTGATCCG
GCCATCTCCAATACTTGTACTACTCTCTGCTGCGTACTTTCGTTGCCGCG
AGCGCCACCAGCTTCCTCCACGCCTCGCGACGGCGAGCCTTCTCCCGTGG
TGCTCGCGGCACCGACATCTATTTCCACGCCCCCTTCTGATCGACCCGCC
CCCGTCGTGGCGACTGCAGCTGTAATCCCACCCCGACCGGGGTCTCCATC
CCCCATCGACCCCCCTTGCCTCGCCGCCTCCTTCCCTGCATCAAGCCCTC
GGCTGGTTCCATTGTCCTCTCCTACGGCCTCTGGTGCCGATGGCGCGCTT
GTTGGCTGGTCTCCCGAGGGCAAAGGTCGGGGCTCTCCGGTTAAAGCTGC
TCTGATGTCTCGATTAGAGGCAACGTCGAGCGGCGTCTCGCCCTTTGAGT
TCAAAAGGGAAGTTTTCGCTCCGGCTTCCACCAGAACGCGGACAGCCTGG
CGGTTTTTGTTAAAGTGTTTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig65681:2353..3326+

>mRNA_H-elongata_contig65681.14150.1 ID=mRNA_H-elongata_contig65681.14150.1|Name=mRNA_H-elongata_contig65681.14150.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig65681:2353..3326+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGGTGATCCGGCCATCTCCAATACTTGTACTACTCTCTGCTGCGT
ACTTTCGTTGCCGCGAGCGCCACCAGCTTCCTCCACGCCTCGCGACGGCG
AGCCTTCTCCCGTGGTGCTCGCGGCACCGACATCTATTTCCACGCCCCCT
TCTGATCGACCCGCCCCCGTCGTGGCGACTGCAGCTGTAATCCCACCCCG
ACCGGGGTCTCCATCCCCCATCGACCCCCCTTGCCTCGCCGCCTCCTTCC
CTGCATCAAGCCCTCGGCTGGTTCCATTGTCCTCTCCTACGGCCTCTGGT
GCCGATGGCGCGCTTGTTGGCTGGTCTCCCGAGGGCAAAGGTCGGGGCTC
TCCGGTTAAAGCTGCTCTGATGTCTCGATTAGAGGCAACGTCGAGCGGCG
TCTCGCCCTTTGAGTTCAAAAGGGAAGTTTTCGCTCCGGCTTCCACCAGA
ACGCGGACAGCCTGGCGGTTTTTGTTAAAGTGTTTGTAGATGGGTGGTGA
TCCGGCCATCTCCAATACTTGTACTACTCTCTGCTGCGTACTTTCGTTGC
CGCGAGCGCCACCAGCTTCCTCCACGCCTCGCGACGGCGAGCCTTCTCCC
GTGGTGCTCGCGGCACCGACATCTATTTCCACGCCCCCTTCTGATCGACC
CGCCCCCGTCGTGGCGACTGCAGCTGTAATCCCACCCCGACCGGGGTCTC
CATCCCCCATCGACCCCCCTTGCCTCGCCGCCTCCTTCCCTGCATCAAGC
CCTCGGCTGGTTCCATTGTCCTCTCCTACGGCCTCTGGTGCCGATGGCGC
GCTTGTTGGCTGGTCTCCCGAGGGCAAAGGTCGGGGCTCTCCGGTTAAAG
CTGCTCTGATGTCTCGATTAGAGGCAACGTCGAGCGGCGTCTCGCCCTTT
GAGTTCAAAAGGGAAGTTTTCGCTCCGGCTTCCACCAGAACGCGGACAGC
CTGGCGGTTTTTGTTAAAGTGTTTGTAG
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