mRNA_H-elongata_contig65619.14142.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: A0A6H5JEB5_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEB5_9PHAE) HSP 1 Score: 424 bits (1089), Expect = 6.460e-143 Identity = 218/250 (87.20%), Postives = 232/250 (92.80%), Query Frame = 1
Query: 28 RADAIQELAFVDLRYEVENVRPGKITESLTVLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQKSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKGMIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFETLG 777
R D+IQELAF+DL+YEVEN+RPG E+L VL+GVSGQANS EMLALMGPSGSGKTSLLNVLAQRVP KSV+GGVFVDG PLSKSFKRRMGFVFQDD+CLWNLTVRETV FAAKLRLPQ TP+KEK ERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSI ++L LT+KGMIVVCSIHQPRSNIFS FDKVLLL+KG TVYYG+R SIVKYFE LG
Sbjct: 33 RGDSIQELAFLDLKYEVENIRPGMEAETLKVLEGVSGQANSGEMLALMGPSGSGKTSLLNVLAQRVPHKSVTGGVFVDGSPLSKSFKRRMGFVFQDDMCLWNLTVRETVMFAAKLRLPQSTPDKEKHERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSITHVLRTLTRKGMIVVCSIHQPRSNIFSEFDKVLLLSKGNTVYYGSRSSIVKYFEALG 282
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: A0A835YP26_9STRA (ATP-binding cassette superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP26_9STRA) HSP 1 Score: 314 bits (804), Expect = 2.160e-99 Identity = 171/275 (62.18%), Postives = 198/275 (72.00%), Query Frame = 1
Query: 40 IQELAFVDLRYEVENVRPGKIT-----------------------------ESLTVLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQKSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKGMIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFETLG 777
IQEL+F+DL Y ++ GK + +LD VSG+A S EMLALMGPSGSGKTSLLNVLAQRVP K+V GG +VDG PL+K+FKR+MGFVFQDDL LWNLTVRET+ FAAKLRLPQ P EKEE V +L+E LGL+ A IIGKE RRG+SGGERKR SIGVEL+T+P VLFLDEPTSGLDSSTALSI+ +L QL + G+IVVCSIHQPR+NIF+ FDKVLLL KGR YYG + +V YF LG
Sbjct: 46 IQELSFLDLCYSIDAPTMGKQRVPRKDGERRRSSLFSRSRNGDAGGKAGEKAKMNILDHVSGEARSGEMLALMGPSGSGKTSLLNVLAQRVPSKNVHGGTYVDGKPLTKAFKRQMGFVFQDDLMLWNLTVRETMLFAAKLRLPQSIPLSEKEECVDDLIEKLGLTDCAHSIIGKESRRGVSGGERKRASIGVELVTAPAVLFLDEPTSGLDSSTALSIVTLLHQLARGGVIVVCSIHQPRANIFNQFDKVLLLVKGRIAYYGRQRDMVPYFSGLG 320
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: A0A6U1MQ19_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MQ19_9STRA) HSP 1 Score: 271 bits (694), Expect = 2.080e-83 Identity = 143/249 (57.43%), Postives = 180/249 (72.29%), Query Frame = 1
Query: 40 IQELAFVDLRYEVENVRPGK---ITESLTVLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQKSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKGMIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFETLG 777
+++ F DL Y+V K + +L VSG + +M+ALMGPSGSGKTSLLNVLAQRV Q SVSG +F++G P++KS+KRRMGFVFQDDL L NLTVRET+ ++AKLRLPQ P KE +V LL+LL L A IG EG+RGISGGERKR +IGVELITSP ++FLDEPTSGLDS+TAL + +L +LT G + + SIHQPR+NIF F KVLLL G VY+G+ G+++ YF + G
Sbjct: 67 VEQFDFQDLSYQVRVKGAAKQQSVQGMKQILSNVSGTVHRGDMVALMGPSGSGKTSLLNVLAQRVDQSSVSGKIFINGLPVTKSWKRRMGFVFQDDLMLSNLTVRETIMYSAKLRLPQSMPTATKEAKVDALLDLLSLQKCAHSKIGSEGKRGISGGERKRTAIGVELITSPSIVFLDEPTSGLDSTTALQTVTLLKELTSLGTVFISSIHQPRANIFYQFHKVLLLQSGTPVYFGSTGNVLDYFSSQG 315
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: R1DY78_EMIHU (ABC transporter domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DY78_EMIHU) HSP 1 Score: 225 bits (574), Expect = 3.640e-66 Identity = 127/238 (53.36%), Postives = 164/238 (68.91%), Query Frame = 1
Query: 82 NVRPGKITESLTVLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQ--KSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKG-MIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFE-TLGES 783
+ R E +LD VSG EM+ALMGPSGSGKTSLL++LA R P+ K +G V + G +K+F RR GFVFQDDL L LTVRET+ FAA+LRLPQ ++E++ RV L+ LGL H A IG E +RG+SGGERKR ++G EL+ P +LFLDEPTSGLD++TALS+ + L + + MI+V S+HQPRSNIFS+FD++LLL+ GR Y GA V Y + LGE+
Sbjct: 38 SARTSNAGERKVILDDVSGCVAPSEMIALMGPSGSGKTSLLSLLAGRAPKGAKLEAGEVTLGGAAPTKAFFRRCGFVFQDDLLLAALTVRETIEFAARLRLPQSLGDEERDRRVQTTLQQLGLEHCAHTAIGSEKKRGVSGGERKRTAVGAELVARPPLLFLDEPTSGLDAATALSLTSCLQSVARTNRMILVLSVHQPRSNIFSLFDQLLLLSGGRVAYNGAAADAVAYMQGALGEA 275
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: A0A8J5EXG5_ZINOF (ABC transporter domain-containing protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5EXG5_ZINOF) HSP 1 Score: 228 bits (580), Expect = 5.980e-66 Identity = 123/246 (50.00%), Postives = 168/246 (68.29%), Query Frame = 1
Query: 49 LAFVDLRYEVENV--RPGKITESLT-VLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQKSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKGMIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFETLG 777
L F D+ Y+V V RP ++ S+ VL GV+G E+LALMGPSG GKT+LLN+L+ R+ KS SG + + P SK+ K+R+GFV QDD+ +LTVRET+ +AA LRLP+ +++KEERV ++ LGL D I+G RGISGGERKRV IG E++ P +LFLDEPTSGLDS+TA+ II +L + G VV +IHQP S IF++FDK++LL KG ++Y+G + YF ++G
Sbjct: 158 LKFSDVGYKVRRVNERPSPVSNSMEYVLQGVTGSVEPGEILALMGPSGGGKTTLLNILSGRIKIKSDSGSITYNDQPYSKALKQRIGFVLQDDVVFTSLTVRETLTYAALLRLPKTLTKQQKEERVMNVIFDLGLERCQDMIVGGASARGISGGERKRVCIGSEILLDPSLLFLDEPTSGLDSTTAIRIIQMLLNIAHAGKSVVITIHQPSSKIFNMFDKLILLGKGSSLYFGKASEAMIYFSSIG 403
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: A0A7J8LFV0_9ROSI (ABC transporter domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8LFV0_9ROSI) HSP 1 Score: 217 bits (552), Expect = 7.710e-66 Identity = 115/245 (46.94%), Postives = 163/245 (66.53%), Query Frame = 1
Query: 43 QELAFVDLRYEVENVRPGKITESLTVLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQKSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKGMIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFETLG 777
+E F D+ Y+V ++ E +L+G++G N E+LALMGPSGSGKT+LLN+L R+ Q +VSG + + P SK K R+GFV QDD+ +LTV+ET+ +AA+LRLP+ ++KE+R +++ LGL D +IG RG+SGGERKRV IG E+I +P +LFLDEPTSGLDS+TAL I L + + G V+ +IHQP S +F FDK++LL KG +Y+G + YF ++G
Sbjct: 22 KERRFTDVTYKVI-IKGMTSCEERDILNGITGAVNPGEVLALMGPSGSGKTTLLNLLGGRLIQSTVSGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKVLTRQQKEKRAVDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRTIQTLQDIAEVGKTVITTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAIDYFSSIG 265
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: A0A067FX70_CITSI (ABC transporter domain-containing protein (Fragment) n=3 Tax=Citrus sinensis TaxID=2711 RepID=A0A067FX70_CITSI) HSP 1 Score: 221 bits (563), Expect = 2.110e-65 Identity = 115/243 (47.33%), Postives = 166/243 (68.31%), Query Frame = 1
Query: 49 LAFVDLRYEVENVRPGKITESLTVLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQKSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKGMIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFETLG 777
L F D+ Y+V ++ +E +L+G++G N E+LALMGPSGSGKT+LLN+L+ R+ + +V G + + HP SKS K ++GFV QDD+ +LTV+ET+ +AA LRLP +++KE+R +++ LGL D +IG RG+SGGERKRV IG E+I +P +LFLDEPTSGLDS+TAL I+ +L + + G VV +IHQP S +F FDK++LL KG +Y+G + YF ++G
Sbjct: 23 LKFTDVTYKVI-LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 264
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: A0A067G553_CITSI (ABC transporter domain-containing protein (Fragment) n=2 Tax=Citrus TaxID=2706 RepID=A0A067G553_CITSI) HSP 1 Score: 221 bits (563), Expect = 5.440e-65 Identity = 115/243 (47.33%), Postives = 166/243 (68.31%), Query Frame = 1
Query: 49 LAFVDLRYEVENVRPGKITESLTVLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQKSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKGMIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFETLG 777
L F D+ Y+V ++ +E +L+G++G N E+LALMGPSGSGKT+LLN+L+ R+ + +V G + + HP SKS K ++GFV QDD+ +LTV+ET+ +AA LRLP +++KE+R +++ LGL D +IG RG+SGGERKRV IG E+I +P +LFLDEPTSGLDS+TAL I+ +L + + G VV +IHQP S +F FDK++LL KG +Y+G + YF ++G
Sbjct: 23 LKFTDVTYKVI-LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 264
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: UPI000CE1D65A (ABC transporter G family member 22-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1D65A) HSP 1 Score: 221 bits (562), Expect = 1.270e-64 Identity = 115/243 (47.33%), Postives = 165/243 (67.90%), Query Frame = 1
Query: 49 LAFVDLRYEVENVRPGKITESLTVLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQKSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKGMIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFETLG 777
L F D+ Y+V ++ + +E +L+G++G N E+LALMGPSGSGKT+LLN+L R+ Q +V G + + HP SK K R+GFV QDD+ +LTV+ET+ +AA LRLP+ +++KE+R +++ LGL D +IG RG+SGGERKRVSIG E+I +P +LFLDEPTSGLDS+TA+ + +L + + G VV +IHQP S +F FDK++LL KG +Y+G YF ++G
Sbjct: 148 LKFTDVSYKVI-LKGMRTSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLIQPTVRGSITYNDHPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLPKTLTKEQKEKRAIDVIHELGLERCQDTMIGGSFVRGVSGGERKRVSIGNEIIINPSLLFLDEPTSGLDSTTAMRTVQLLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEATVYFSSIG 389
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Match: A0A443NPE6_9MAGN (ABC transporter-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NPE6_9MAGN) HSP 1 Score: 223 bits (569), Expect = 1.480e-64 Identity = 119/243 (48.97%), Postives = 166/243 (68.31%), Query Frame = 1
Query: 49 LAFVDLRYEVENVRPGKITESLTVLDGVSGQANSREMLALMGPSGSGKTSLLNVLAQRVPQKSVSGGVFVDGHPLSKSFKRRMGFVFQDDLCLWNLTVRETVFFAAKLRLPQRTPEKEKEERVAELLELLGLSHVADGIIGKEGRRGISGGERKRVSIGVELITSPDVLFLDEPTSGLDSSTALSIINILDQLTKKGMIVVCSIHQPRSNIFSVFDKVLLLNKGRTVYYGARGSIVKYFETLG 777
L F D++Y+V ++ + T +L G+SG A+ E+LALMGPSGSGKT+LLN+L+ RV + G + + P SKS KRR+GFV QDD+ +LTV+ET+ +AA LRLP+ +++KEER +++ LGL D +IG RG+SGGERKRV IG E+I +P VLFLDEPTSGLDS+TAL I+ +L + + G VV +IHQP S +F FDK++LL KG +Y+G + YF ++G
Sbjct: 140 LKFTDVKYKVV-LKSVRGTVEKDILHGISGSADPGEVLALMGPSGSGKTTLLNLLSGRVTDTTSGGSITYNDQPYSKSLKRRIGFVTQDDVLFPHLTVKETLTYAALLRLPKMLTKQQKEERAMDVISELGLERCQDTLIGGSFVRGVSGGERKRVCIGNEIIINPSVLFLDEPTSGLDSTTALRIVQMLHDIAEDGKTVVTTIHQPSSRLFLKFDKLILLGKGSLLYFGKASEALVYFSSIG 381 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65619.14142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig65619.14142.1 >prot_H-elongata_contig65619.14142.1 ID=prot_H-elongata_contig65619.14142.1|Name=mRNA_H-elongata_contig65619.14142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp MGRHARSLRRADAIQELAFVDLRYEVENVRPGKITESLTVLDGVSGQANSback to top mRNA from alignment at H-elongata_contig65619:605..2877- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig65619.14142.1 ID=mRNA_H-elongata_contig65619.14142.1|Name=mRNA_H-elongata_contig65619.14142.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2273bp|location=Sequence derived from alignment at H-elongata_contig65619:605..2877- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig65619:605..2877- >mRNA_H-elongata_contig65619.14142.1 ID=mRNA_H-elongata_contig65619.14142.1|Name=mRNA_H-elongata_contig65619.14142.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig65619:605..2877- (Himanthalia elongata Himel1 dioecious)back to top |