mRNA_H-elongata_contig65581.14140.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65581.14140.1
Unique NamemRNA_H-elongata_contig65581.14140.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65581.14140.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.830e-8
Identity = 43/88 (48.86%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:    1 EHFRNLMEGNPRKAARVS------GNIKEEAGAREGV----------IAGSDDNSAQSSSSRGSRLATILVIVGTFSQVLWLTGSLLQ 216
            EH R LMEG PRK  R S      G I    G   GV          + G DDNSA+     GSR AT+LVIVGTFSQVLWL G L++
Sbjct:  227 EHLRTLMEGAPRKEVRSSRDSPADGGIVAAGGRGSGVGTAAAVEKRMVDGEDDNSARGGGVGGSRFATVLVIVGTFSQVLWLVGRLIE 314
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BLAST of mRNA_H-elongata_contig65581.14140.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.380e-8
Identity = 42/88 (47.73%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:    1 EHFRNLMEGNPRKAARVS------GNIKEEAGAREGV----------IAGSDDNSAQSSSSRGSRLATILVIVGTFSQVLWLTGSLLQ 216
            EH R+LMEG PRK    S      G I    G   GV          + G DDNSA+     GSR AT+LVIVGTFSQVLWL G L++
Sbjct:  184 EHLRSLMEGTPRKKVGFSRGSLADGGIVTAGGRGSGVGTAAAVGERMVDGEDDNSARGGCEGGSRFATVLVIVGTFSQVLWLVGRLIE 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65581.14140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS55_9PHAE2.830e-848.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTZ0_ECTSI3.380e-847.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65581contigH-elongata_contig65581:3..1465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1463
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65581.14140.1prot_H-elongata_contig65581.14140.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65581 21..221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.5556135-UTR-H-elongata_contig65581:2..201622931042.5556135-UTR-H-elongata_contig65581:2..20Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65581 3..20 +
1691679674.2340832-UTR-H-elongata_contig65581:2..201691679674.2340832-UTR-H-elongata_contig65581:2..20Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65581 3..20 +
1622931042.584224-UTR-H-elongata_contig65581:221..14651622931042.584224-UTR-H-elongata_contig65581:221..1465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65581 222..1465 +
1691679674.2516565-UTR-H-elongata_contig65581:221..14651691679674.2516565-UTR-H-elongata_contig65581:221..1465Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65581 222..1465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.5687695-CDS-H-elongata_contig65581:20..2211622931042.5687695-CDS-H-elongata_contig65581:20..221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65581 21..221 +
1691679674.2428849-CDS-H-elongata_contig65581:20..2211691679674.2428849-CDS-H-elongata_contig65581:20..221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65581 21..221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65581.14140.1

>prot_H-elongata_contig65581.14140.1 ID=prot_H-elongata_contig65581.14140.1|Name=mRNA_H-elongata_contig65581.14140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MEGNPRKAARVSGNIKEEAGAREGVIAGSDDNSAQSSSSRGSRLATILVI
VGTFSQVLWLTGSLLQ*
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mRNA from alignment at H-elongata_contig65581:3..1465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65581.14140.1 ID=mRNA_H-elongata_contig65581.14140.1|Name=mRNA_H-elongata_contig65581.14140.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1463bp|location=Sequence derived from alignment at H-elongata_contig65581:3..1465+ (Himanthalia elongata Himel1 dioecious)
GAGCACTTTCGTAACCTCATGGAGGGTAATCCCCGGAAGGCGGCAAGGGT
CTCTGGTAATATAAAGGAAGAGGCGGGCGCAAGGGAAGGGGTGATAGCAG
GTAGTGACGATAACTCCGCGCAGTCCTCCTCGAGTCGAGGCTCGCGGTTG
GCGACGATCCTTGTGATCGTTGGAACGTTTTCGCAGGTATTGTGGTTGAC
GGGCAGTCTCTTGCAGTGAGGTTGAATGCATCACTGCGTGCTTTTTGTGG
GCTCTCTCAGCCGTTAGCCACGCGGTGCTTTCAGTAGAAGGATAGTGCAG
ACGACCCTTGAAGTCGCCAGCGTGCAAGTATTGTTAGATGTGCGTGTGAT
GAAGCTTAGTCCGAACTCACTCTAAAGATGGTCGCGTTGTGTGTGTGTTT
GTGTGTGTGCACCTCCATTCTCTTGGTGCAGCGCATGGTTTCGATTGCGT
TTTTCGGCGTTGTGAATGTACACATGTAGATTACGCGTGAAGCGCTTGAG
CGACAATCATAAGGTTCATATGACATTGGCTCGATCATAATTACGCTCGC
GGACAGTGCACGTCGAACTCGCGCTGAACGTCTGACCGAGAAGATGAGTG
TTGAGAATCGTAAATTGTTGAATGAAGGATTATTAAAAACACCGACAAGG
ATGATTACATAACATCACGATCTCGCAATGTTCGACTCTCCTTTTGTAGC
GAAGCGACATACGTCGAACTACTACATGTTAGGGATCTTGGGAGAGCGGA
GGTGGTTGTCTCACGGTTGTTTTGAGCGTGTGTGGTTCATGAACCTCCCG
TCCCGTTCACGGACAGTCGTCGATGCTAGTCTCGCCCAATGGCCAACCCG
TAAATCGCAGACAGCGCCCTATCGGTAAACGAGGTACCCCTATAGTTAGA
TTGGCAGTGAGTAGATATCACGCCCCAGGTTGAAATGCGCATGTGGCTCT
GTGTCGGCACGAGTTGTGCAGAAAGACAAGTCACCGTGTCAATGGAAGAG
ATTCGTGCTTTCAGCTTTTTAGAAACGGCATGGTACGCCTAGCATCCAAG
TAGAAAGGTACATCACATCTTGGAGGATCCGCTAAACGTTAGCGTTGATA
TCGTGAACTATTAATAGTGCAAGCCGAATGAAGAGGGCTCGGTTTCCGCC
GTCTAGTCGCGTCTGTAAGATTCTCTGCTTCCATCAGGACGTCGATTAGT
GCATGTCTACTATATGTGCGCACGGTGAATTCCAAGGAGCAGCACCATTG
GATCCCACGTAGACGACGCCCTACGAATGTCGAATTCTAAACATTGTGAC
AGTAAGATGGTTCTAAAGTACACAATAACGCACCCTTGGAGGTGAGAGTC
CACGCCTATATCAAGGAGGAATATTGTGACGAAAACGCAACCGTACTAAT
ATTGTGGCCTTCCAAGACATTCTTGACCGTGACGACTCCGTGAAGAAACA
GGGTGACAATCCC
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Coding sequence (CDS) from alignment at H-elongata_contig65581:3..1465+

>mRNA_H-elongata_contig65581.14140.1 ID=mRNA_H-elongata_contig65581.14140.1|Name=mRNA_H-elongata_contig65581.14140.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig65581:3..1465+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGGTAATCCCCGGAAGGCGGCAAGGGTCTCTGGTAATATAAAGGA
AGAGGCGGGCGCAAGGGAAGGGGTGATAGCAGGTAGTGACGATAACTCCG
CGCAGTCCTCCTCGAGTCGAGGCTCGCGGTTGGCGACGATCCTTGTGATC
GTTGGAACGTTTTCGCAGGTATTGTGGTTGACGGGCAGTCTCTTGCAGTG
AATGGAGGGTAATCCCCGGAAGGCGGCAAGGGTCTCTGGTAATATAAAGG
AAGAGGCGGGCGCAAGGGAAGGGGTGATAGCAGGTAGTGACGATAACTCC
GCGCAGTCCTCCTCGAGTCGAGGCTCGCGGTTGGCGACGATCCTTGTGAT
CGTTGGAACGTTTTCGCAGGTATTGTGGTTGACGGGCAGTCTCTTGCAGT
GA
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