mRNA_H-elongata_contig6551.14132.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6551.14132.1
Unique NamemRNA_H-elongata_contig6551.14132.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6551.14132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6551contigH-elongata_contig6551:7358..9909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue1.2e-34
Seed eggNOG ortholog2880.D7G585
Preferred nameCCDC109B
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K14831,ko:K20858
KEGG TC1.A.77.1
KEGG ReactionR05000,R05616,R07273
KEGG Pathwayko00130,ko01100,ko01110,ko04020,ko04218,ko04621,map00130,map01100,map01110,map04020,map04218,map04621
KEGG ModuleM00128
GOsGO:0002009,GO:0002791,GO:0002793,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005246,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006873,GO:0006874,GO:0006875,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007610,GO:0007611,GO:0007613,GO:0007615,GO:0008016,GO:0008150,GO:0008200,GO:0008324,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009987,GO:0010646,GO:0010647,GO:0010817,GO:0015075,GO:0015085,GO:0015267,GO:0015291,GO:0015292,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016247,GO:0016248,GO:0019222,GO:0019722,GO:0019725,GO:0019855,GO:0019866,GO:0019932,GO:0022607,GO:0022803,GO:0022804,GO:0022838,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030029,GO:0030036,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032024,GO:0032501,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033500,GO:0034220,GO:0034702,GO:0034703,GO:0034704,GO:0035556,GO:0036444,GO:0042592,GO:0042593,GO:0042802,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044057,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046873,GO:0046883,GO:0046887,GO:0048518,GO:0048522,GO:0048583,GO:0048598,GO:0048729,GO:0048856,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051259,GO:0051260,GO:0051560,GO:0051561,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060026,GO:0060027,GO:0060401,GO:0060429,GO:0061041,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070509,GO:0070588,GO:0070838,GO:0071840,GO:0072375,GO:0072503,GO:0072507,GO:0072511,GO:0080134,GO:0090087,GO:0090276,GO:0090277,GO:0097435,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:0099106,GO:1902495,GO:1903034,GO:1903426,GO:1903522,GO:1903530,GO:1903532,GO:1904951,GO:1990246,GO:1990351,GO:1990542,GO:2000377
EggNOG free text desc.uniporter activity
EggNOG OGsKOG2966@1,KOG2966@2759
EC2.5.1.39
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko02000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006605.1
Exons5
Model size1350
Cds size1350
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6551.14132.1prot_H-elongata_contig6551.14132.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6551 7358..9909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.7668009-CDS-H-elongata_contig6551:7357..75461622931041.7668009-CDS-H-elongata_contig6551:7357..7546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 7358..7546 +
1691679673.972353-CDS-H-elongata_contig6551:7357..75461691679673.972353-CDS-H-elongata_contig6551:7357..7546Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 7358..7546 +
1622931041.7833338-CDS-H-elongata_contig6551:7751..78831622931041.7833338-CDS-H-elongata_contig6551:7751..7883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 7752..7883 +
1691679673.9853146-CDS-H-elongata_contig6551:7751..78831691679673.9853146-CDS-H-elongata_contig6551:7751..7883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 7752..7883 +
1622931041.8060281-CDS-H-elongata_contig6551:8027..81291622931041.8060281-CDS-H-elongata_contig6551:8027..8129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 8028..8129 +
1691679673.996348-CDS-H-elongata_contig6551:8027..81291691679673.996348-CDS-H-elongata_contig6551:8027..8129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 8028..8129 +
1622931041.8232636-CDS-H-elongata_contig6551:8689..95231622931041.8232636-CDS-H-elongata_contig6551:8689..9523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 8690..9523 +
1691679674.0042548-CDS-H-elongata_contig6551:8689..95231691679674.0042548-CDS-H-elongata_contig6551:8689..9523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 8690..9523 +
1622931041.8461108-CDS-H-elongata_contig6551:9816..99091622931041.8461108-CDS-H-elongata_contig6551:9816..9909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 9817..9909 +
1691679674.016748-CDS-H-elongata_contig6551:9816..99091691679674.016748-CDS-H-elongata_contig6551:9816..9909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6551 9817..9909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6551.14132.1

>prot_H-elongata_contig6551.14132.1 ID=prot_H-elongata_contig6551.14132.1|Name=mRNA_H-elongata_contig6551.14132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=450bp
ERNQSIEQVHSLRSELARRQERLKYTQQLQDIATQEQSAAVQLSYQRMLA
DKQGVDTTLKETEEIVRDLKKSCESARDRAQGAQVSQWEAEAKCSVLERQ
VKEREKEALARDEMCLRTRKNVRRETAAAEARLDALSGQVEKLRRAVRDE
RFSREAAGRDCRQARDTYAQTRRYLDNILRVNQELVMRRTEIATRSRSMG
QRPTSMQGKEGPNESQCLNGHKIHPSERHGCGIFGELHLGSAVADALRAG
RAGSDPVPLLEVLYERIGFSVLQREGENSGAQSLPISPRWDKACNIVEGA
SSQNGENGFCSSKLPVPVNTCRFFPSECVKRSSTKDVQPFSQYKETKRTE
IRKYGAGRGIPEGSNPSRHGYSFAHSPARRSQSIAERSPKVLKRLEGLAI
QLKRERAGVERRYMAMIQRANSSVHKGVEDADLDFGSLARAIASLEVKK*
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mRNA from alignment at H-elongata_contig6551:7358..9909+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6551.14132.1 ID=mRNA_H-elongata_contig6551.14132.1|Name=mRNA_H-elongata_contig6551.14132.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2552bp|location=Sequence derived from alignment at H-elongata_contig6551:7358..9909+ (Himanthalia elongata Himel1 dioecious)
GAACGCAACCAATCGATTGAACAAGTGCACTCGCTCAGAAGCGAGCTCGC
TCGGCGCCAAGAACGCTTGAAGTATACACAACAGCTTCAAGATATCGCCA
CCCAAGAGCAATCCGCCGCGGTTCAGCTTTCCTATCAACGAATGCTTGCT
GACAAACAAGGGGTAGATACAACTCTCAAGGAAACAGAGGTGAATGTTTG
ATTGAATGGACACCAGGCACTTAAATGCGAGAATCTACCTTGGTCCGGAA
AAGGCTATAATACTACAATGTATTCGCGCTGGCGAGATATACACCGCTAT
AACACCGTGATGGACGAAGCGCGGTCACGACTCCTCCATCACCAACACCA
ACACCTTCACGTGAATTATGTTTCTTTCACATCCCAATGGCCAGGAAATA
GTTCGAGATCTCAAGAAATCTTGTGAAAGTGCGCGTGACCGTGCTCAAGG
CGCACAAGTGTCGCAATGGGAAGCGGAGGCAAAATGTTCTGTTCTAGAGC
GCCAGGTCAAAGAACGCGAAAAGGAGGTACACATTATCTTGGTGCTTGGA
GTTTGCCGTGTTCGAAATAATGACGCTGAAAGCAGTAGTTAATAGGCCCC
AAAGCAGGTCAGATGTAAGCAGTTGCTTGAGCGAGGGGGGATGTGATTTC
ACCCTGACCACATGTTACAGGCTCTAGCTAGGGATGAGATGTGCTTAAGG
ACCCGGAAAAATGTTCGTCGGGAGACCGCAGCGGCTGAAGCTCGGCTAGA
TGCCTTGTCGGGCCAAGTAGAGGTGAGAAAGTACCTTGGAGGACATTAAC
TCGTTTATCTGCATCAGGGATTAAAATAGACAGCAGGCGCGGCGTGCAGC
CCCCCGCATAAAATTTTGGGGACTTGGGGGTATATGCCTTAGTATAGCCA
TTGAAAATAGACAAGATATTCCTTGCGACGGTTCATTTCGACCAAGCGAG
AAGAAATATAGCACAATGCCTTCAAAGAGGAGTTTTCGCCTTCGCGCCTC
GATGAAGAATGCCCCCCCCCAAAAAAGAATCGCCTTCGGCGAAAAAAAGG
GACCCTAAAAAAAATCGCATGCGGCGAAAAATGTGCGGACCACATTTTTT
ATGTGCGGCAACCCGCACATTGCCCCTCCCAAAATGTGCGCTGGCCGGAT
TTCAGCCGAAAAATGTGCGCCAGCGCATCTCCGCACGCCCGATTTTTATC
CCTGATCTGAATGTATCTACCAGGCGAAAGTAGTGGTCATATAATCGAAT
ATTCCACCTGCCAATGAAATTCCTCGTTCTTCTCCTTCACTCATGGATAT
GTTACTGGCTGCGCGTTCTACTGTATGCGCAGAAACTCAGGCGCGCCGTC
AGGGACGAACGTTTTTCTAGGGAAGCGGCCGGGCGTGACTGCCGACAAGC
CAGAGACACCTACGCTCAAACCAGACGATACCTCGATAACATTCTCCGAG
TAAATCAGGAGCTCGTGATGAGAAGAACGGAGATAGCCACGCGATCACGT
TCGATGGGGCAGCGACCTACATCGATGCAAGGAAAGGAAGGACCGAACGA
GTCACAATGTCTCAATGGCCATAAAATACATCCGTCAGAGCGACACGGAT
GTGGTATCTTCGGAGAACTTCACTTGGGTTCAGCCGTTGCAGATGCGCTG
AGGGCGGGTAGGGCGGGGAGCGACCCTGTTCCTCTTCTGGAGGTACTTTA
CGAACGGATCGGTTTCTCTGTTCTTCAGCGAGAGGGTGAAAACAGTGGCG
CTCAAAGCCTACCTATAAGTCCTAGGTGGGACAAGGCGTGCAATATTGTT
GAGGGGGCAAGTTCTCAAAACGGAGAAAATGGTTTTTGCAGCTCCAAGCT
TCCGGTCCCCGTGAATACTTGTAGATTTTTTCCTAGTGAATGTGTGAAGC
GAAGTTCAACGAAAGATGTACAACCCTTCAGCCAATACAAGGAGACCAAG
CGAACGGAAATTAGAAAATATGGAGCTGGGAGAGGGATACCCGAGGGGAG
CAACCCGAGTAGACACGGCTATTCGTTTGCGCACTCACCCGCCAGAAGAT
CGCAGTCTATCGCCGAGCGGTCTCCTAAGGTGTTGAAACGATTGGAAGGA
TTGGCAATCCAACTCAAGAGAGAGAGGGCGGGCGTTGAACGGCGGTACAT
GGCTATGATACAACGGGTAAGTGTCGCTGGGGGGTCGGTATAACTTATCT
GGATGTAGTTTTCCCGTTAGCTAACTTGAAGCTTGAGGATGAAATAGTAC
AATTCTTCTCTATGTTTACACGGTGAACCAGCGGCGAATACGAATTGCTG
GGCCCTCCTCGCTATGTTAGCTCATATTATTGTGCATCAAGATATCTTCA
AATGCAAATGGTGTACAGAGTCCTTAATAAGAACGTACGATTTGACTCTT
GGTCAGCTTGTGTGTCGCCCTGCTAACAGTTTCCCGAACCGCCATGCTTC
CGTTTACAGGCTAATTCTAGCGTCCATAAAGGTGTGGAGGATGCGGATTT
AGACTTCGGGAGCCTGGCGAGAGCCATCGCTTCCCTTGAGGTAAAAAAGT
AA
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Coding sequence (CDS) from alignment at H-elongata_contig6551:7358..9909+

>mRNA_H-elongata_contig6551.14132.1 ID=mRNA_H-elongata_contig6551.14132.1|Name=mRNA_H-elongata_contig6551.14132.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2700bp|location=Sequence derived from alignment at H-elongata_contig6551:7358..9909+ (Himanthalia elongata Himel1 dioecious)
GAACGCAACCAATCGATTGAACAAGTGCACTCGCTCAGAAGCGAGCTCGC
TCGGCGCCAAGAACGCTTGAAGTATACACAACAGCTTCAAGATATCGCCA
CCCAAGAGCAATCCGCCGCGGTTCAGCTTTCCTATCAACGAATGCTTGCT
GACAAACAAGGGGTAGATACAACTCTCAAGGAAACAGAGGAACGCAACCA
ATCGATTGAACAAGTGCACTCGCTCAGAAGCGAGCTCGCTCGGCGCCAAG
AACGCTTGAAGTATACACAACAGCTTCAAGATATCGCCACCCAAGAGCAA
TCCGCCGCGGTTCAGCTTTCCTATCAACGAATGCTTGCTGACAAACAAGG
GGTAGATACAACTCTCAAGGAAACAGAGGAAATAGTTCGAGATCTCAAGA
AATCTTGTGAAAGTGCGCGTGACCGTGCTCAAGGCGCACAAGTGTCGCAA
TGGGAAGCGGAGGCAAAATGTTCTGTTCTAGAGCGCCAGGTCAAAGAACG
CGAAAAGGAGGAAATAGTTCGAGATCTCAAGAAATCTTGTGAAAGTGCGC
GTGACCGTGCTCAAGGCGCACAAGTGTCGCAATGGGAAGCGGAGGCAAAA
TGTTCTGTTCTAGAGCGCCAGGTCAAAGAACGCGAAAAGGAGGCTCTAGC
TAGGGATGAGATGTGCTTAAGGACCCGGAAAAATGTTCGTCGGGAGACCG
CAGCGGCTGAAGCTCGGCTAGATGCCTTGTCGGGCCAAGTAGAGGCTCTA
GCTAGGGATGAGATGTGCTTAAGGACCCGGAAAAATGTTCGTCGGGAGAC
CGCAGCGGCTGAAGCTCGGCTAGATGCCTTGTCGGGCCAAGTAGAGAAAC
TCAGGCGCGCCGTCAGGGACGAACGTTTTTCTAGGGAAGCGGCCGGGCGT
GACTGCCGACAAGCCAGAGACACCTACGCTCAAACCAGACGATACCTCGA
TAACATTCTCCGAGTAAATCAGGAGCTCGTGATGAGAAGAACGGAGATAG
CCACGCGATCACGTTCGATGGGGCAGCGACCTACATCGATGCAAGGAAAG
GAAGGACCGAACGAGTCACAATGTCTCAATGGCCATAAAATACATCCGTC
AGAGCGACACGGATGTGGTATCTTCGGAGAACTTCACTTGGGTTCAGCCG
TTGCAGATGCGCTGAGGGCGGGTAGGGCGGGGAGCGACCCTGTTCCTCTT
CTGGAGGTACTTTACGAACGGATCGGTTTCTCTGTTCTTCAGCGAGAGGG
TGAAAACAGTGGCGCTCAAAGCCTACCTATAAGTCCTAGGTGGGACAAGG
CGTGCAATATTGTTGAGGGGGCAAGTTCTCAAAACGGAGAAAATGGTTTT
TGCAGCTCCAAGCTTCCGGTCCCCGTGAATACTTGTAGATTTTTTCCTAG
TGAATGTGTGAAGCGAAGTTCAACGAAAGATGTACAACCCTTCAGCCAAT
ACAAGGAGACCAAGCGAACGGAAATTAGAAAATATGGAGCTGGGAGAGGG
ATACCCGAGGGGAGCAACCCGAGTAGACACGGCTATTCGTTTGCGCACTC
ACCCGCCAGAAGATCGCAGTCTATCGCCGAGCGGTCTCCTAAGGTGTTGA
AACGATTGGAAGGATTGGCAATCCAACTCAAGAGAGAGAGGGCGGGCGTT
GAACGGCGGTACATGGCTATGATACAACGGAAACTCAGGCGCGCCGTCAG
GGACGAACGTTTTTCTAGGGAAGCGGCCGGGCGTGACTGCCGACAAGCCA
GAGACACCTACGCTCAAACCAGACGATACCTCGATAACATTCTCCGAGTA
AATCAGGAGCTCGTGATGAGAAGAACGGAGATAGCCACGCGATCACGTTC
GATGGGGCAGCGACCTACATCGATGCAAGGAAAGGAAGGACCGAACGAGT
CACAATGTCTCAATGGCCATAAAATACATCCGTCAGAGCGACACGGATGT
GGTATCTTCGGAGAACTTCACTTGGGTTCAGCCGTTGCAGATGCGCTGAG
GGCGGGTAGGGCGGGGAGCGACCCTGTTCCTCTTCTGGAGGTACTTTACG
AACGGATCGGTTTCTCTGTTCTTCAGCGAGAGGGTGAAAACAGTGGCGCT
CAAAGCCTACCTATAAGTCCTAGGTGGGACAAGGCGTGCAATATTGTTGA
GGGGGCAAGTTCTCAAAACGGAGAAAATGGTTTTTGCAGCTCCAAGCTTC
CGGTCCCCGTGAATACTTGTAGATTTTTTCCTAGTGAATGTGTGAAGCGA
AGTTCAACGAAAGATGTACAACCCTTCAGCCAATACAAGGAGACCAAGCG
AACGGAAATTAGAAAATATGGAGCTGGGAGAGGGATACCCGAGGGGAGCA
ACCCGAGTAGACACGGCTATTCGTTTGCGCACTCACCCGCCAGAAGATCG
CAGTCTATCGCCGAGCGGTCTCCTAAGGTGTTGAAACGATTGGAAGGATT
GGCAATCCAACTCAAGAGAGAGAGGGCGGGCGTTGAACGGCGGTACATGG
CTATGATACAACGGGCTAATTCTAGCGTCCATAAAGGTGTGGAGGATGCG
GATTTAGACTTCGGGAGCCTGGCGAGAGCCATCGCTTCCCTTGAGGTAAA
AAAGTAAGCTAATTCTAGCGTCCATAAAGGTGTGGAGGATGCGGATTTAG
ACTTCGGGAGCCTGGCGAGAGCCATCGCTTCCCTTGAGGTAAAAAAGTAA
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