mRNA_H-elongata_contig65492.14131.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65492.14131.1
Unique NamemRNA_H-elongata_contig65492.14131.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: D8LMY1_ECTSI (Protein-synthesizing GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY1_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 5.950e-35
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQ 192
            MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQ
Sbjct:  381 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQ 444
[Close]
BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: A0A7S0F643_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F643_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.180e-32
Identity = 53/66 (80.30%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQGS 198
            MVNIGSTA+GG+V+AVK DLAK++LTQPVCT+EGEKIALSRRVDKHWRLIGWGQIR+G+KIE++  
Sbjct:  131 MVNIGSTATGGRVIAVKGDLAKVVLTQPVCTEEGEKIALSRRVDKHWRLIGWGQIRKGSKIEVKAE 196
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BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: A0A6S9GDD6_HETAK (Protein-synthesizing GTPase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GDD6_HETAK)

HSP 1 Score: 124 bits (311), Expect = 4.570e-32
Identity = 58/63 (92.06%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEI 189
            MVNIGSTA+GGKVLAVK+DLAK+LLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRG+K+EI
Sbjct:  411 MVNIGSTATGGKVLAVKEDLAKVLLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGSKLEI 473
[Close]
BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: K3WE95_GLOUD (Protein-synthesizing GTPase n=29 Tax=Oomycota TaxID=4762 RepID=K3WE95_GLOUD)

HSP 1 Score: 123 bits (308), Expect = 1.070e-31
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQGSK 201
            MVNIGSTA+GGKVLAVKQDLAKILLT PVCTQEGEKIA+SRR+DKHWRLIGWGQIRRG++IEI  S+
Sbjct:  397 MVNIGSTATGGKVLAVKQDLAKILLTAPVCTQEGEKIAISRRIDKHWRLIGWGQIRRGSRIEIAESE 463
[Close]
BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: A0A835YYS7_9STRA (Protein-synthesizing GTPase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYS7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.090e-31
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQGS 198
            MVNIGSTASGGKVLAVK DLAKILLTQPVCT+EGEKIALSRRVDKHWRLIGWGQIRRG+KI + G 
Sbjct:  430 MVNIGSTASGGKVLAVKGDLAKILLTQPVCTEEGEKIALSRRVDKHWRLIGWGQIRRGSKIAVAGD 495
[Close]
BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: F0Y3F3_AURAN (Protein-synthesizing GTPase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3F3_AURAN)

HSP 1 Score: 120 bits (301), Expect = 1.160e-30
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQGS 198
            MVNIGSTA+GGKVLAVK DLAKILLTQPVCT EGEKIALSRRVDKHWRLIGWGQIRRG +++I  S
Sbjct:  405 MVNIGSTATGGKVLAVKADLAKILLTQPVCTMEGEKIALSRRVDKHWRLIGWGQIRRGARVDINAS 470
[Close]
BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: A0A7S0CFG0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CFG0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.450e-30
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEI 189
            MVNIGSTA+GG+V AVK +LAK+ LTQPVCTQEGEKIALSRRVDKHWRLIGWGQIR+G  IEI
Sbjct:   65 MVNIGSTATGGRVKAVKDELAKVALTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRKGVVIEI 127
[Close]
BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: A0A2D4C5H9_PYTIN (Protein-synthesizing GTPase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5H9_PYTIN)

HSP 1 Score: 120 bits (302), Expect = 2.690e-30
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQ 192
            MVNIGSTA+GGKVLAVKQDLAKILLT PVCTQEGEKIA+SRR+DKHWRLIGWG+IRRG ++EIQ
Sbjct:  396 MVNIGSTATGGKVLAVKQDLAKILLTAPVCTQEGEKIAISRRIDKHWRLIGWGEIRRGIRVEIQ 459
[Close]
BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: A0A7S4A8Q2_9STRA (Protein-synthesizing GTPase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8Q2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.840e-30
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQGS 198
            MVNIGSTA+GGKVLAVK DLAKILLTQPVCT EGEKIALSRRVDKHWRLIGWGQIRRG ++E+  +
Sbjct:  394 MVNIGSTATGGKVLAVKADLAKILLTQPVCTTEGEKIALSRRVDKHWRLIGWGQIRRGARVEVAAA 459
[Close]
BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Match: A0A6U4HRZ6_9STRA (Protein-synthesizing GTPase n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HRZ6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.730e-30
Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGNKIEIQGS 198
            MVNIGSTA+GG+V+AVK++ AKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRG +IE Q S
Sbjct:  423 MVNIGSTATGGRVVAVKKEKAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTRIEDQNS 488
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65492.14131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMY1_ECTSI5.950e-35100.00Protein-synthesizing GTPase n=2 Tax=Ectocarpus Tax... [more]
A0A7S0F643_9STRA4.180e-3280.30Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A6S9GDD6_HETAK4.570e-3292.06Protein-synthesizing GTPase n=1 Tax=Heterosigma ak... [more]
K3WE95_GLOUD1.070e-3186.57Protein-synthesizing GTPase n=29 Tax=Oomycota TaxI... [more]
A0A835YYS7_9STRA1.090e-3189.39Protein-synthesizing GTPase n=2 Tax=Tribonema minu... [more]
F0Y3F3_AURAN1.160e-3086.36Protein-synthesizing GTPase n=1 Tax=Aureococcus an... [more]
A0A7S0CFG0_9STRA2.450e-3084.13Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A2D4C5H9_PYTIN2.690e-3087.50Protein-synthesizing GTPase n=1 Tax=Pythium insidi... [more]
A0A7S4A8Q2_9STRA2.840e-3084.85Protein-synthesizing GTPase n=1 Tax=Pelagomonas ca... [more]
A0A6U4HRZ6_9STRA7.730e-3084.85Protein-synthesizing GTPase n=4 Tax=Phaeomonas par... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65492contigH-elongata_contig65492:2078..3241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue7.5e-29
Seed eggNOG ortholog2880.D8LMY1
Preferred nameeIF-2gamma
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K03242,ko:K04257,ko:K11419
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko03013,ko04740,map00310,map03013,map04740
GOsGO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005850,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016282,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG3276@1,KOG0466@2759
EC2.1.1.43
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03012,ko03036,ko04030
Hectar predicted targeting categoryother localisation
Exons3
Model size204
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65492.14131.1prot_H-elongata_contig65492.14131.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65492 2078..3241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931041.686826-CDS-H-elongata_contig65492:2077..21461622931041.686826-CDS-H-elongata_contig65492:2077..2146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65492 2078..2146 -
1691679673.9389882-CDS-H-elongata_contig65492:2077..21461691679673.9389882-CDS-H-elongata_contig65492:2077..2146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65492 2078..2146 -
1622931041.7031472-CDS-H-elongata_contig65492:2603..26841622931041.7031472-CDS-H-elongata_contig65492:2603..2684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65492 2604..2684 -
1691679673.9514701-CDS-H-elongata_contig65492:2603..26841691679673.9514701-CDS-H-elongata_contig65492:2603..2684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65492 2604..2684 -
1622931041.7215726-CDS-H-elongata_contig65492:3187..32411622931041.7215726-CDS-H-elongata_contig65492:3187..3241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65492 3188..3241 -
1691679673.9617765-CDS-H-elongata_contig65492:3187..32411691679673.9617765-CDS-H-elongata_contig65492:3187..3241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65492 3188..3241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65492.14131.1

>prot_H-elongata_contig65492.14131.1 ID=prot_H-elongata_contig65492.14131.1|Name=mRNA_H-elongata_contig65492.14131.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MVNIGSTASGGKVLAVKQDLAKILLTQPVCTQEGEKIALSRRVDKHWRLI
GWGQIRRGNKIEIQGSK*
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mRNA from alignment at H-elongata_contig65492:2078..3241-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65492.14131.1 ID=mRNA_H-elongata_contig65492.14131.1|Name=mRNA_H-elongata_contig65492.14131.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1164bp|location=Sequence derived from alignment at H-elongata_contig65492:2078..3241- (Himanthalia elongata Himel1 dioecious)
ATGGTGAACATCGGGTCAACAGCCTCTGGCGGCAAAGTCTTGGCTGTGAA
GCAGGTGACCGCCTCTCGAGCGCTTGCTTCGCGTGGAGTGCCACTCTTTC
TCTCTTTCGCTAGTTTTTGTTGCGCGTCGTGTTTGTTTTGTTTTAAACAA
AGGACGGGTCGGATCGAATCACCCGTCGATCTCGATTAAAGCTATAGGTT
TTTTGTTCGCGCAAGAGACGATATGAAGAATGATCCGCGAGCACTGTGAT
GCAATCCGCCAATTATCCCTCCTCTACCCTTAACTTTGACGTTATCTCAT
CCCGGGCCAAAAACGCATCTTTTTGTGTAACTCCCTCTTCTTGTGTCGCG
TCATGTCACAGGACGTTTTTTATTATGGCCCTGGTATGCGAAAGGGTTGA
GTGGACATGGAAAGCATGTGAATGACAAACAGGCCAATCGAGAATGCGAA
ATAGACTAGACCCAGAGCGAGCGACCCCTTTTTTACGATCACATTTTTGT
TTTTTGGTGCGACGCTTGTGGGGGCGGGGGTGTTTGCTCTGTTGTCTCCT
CGTATAGGACCTCGCGAAGATCCTGCTCACGCAGCCGGTTTGTACGCAGG
AGGGAGAGAAAATCGCGCTTTCGAGGCGTGTCGACAAGGTAAAAAGGCGT
TTTTTAAAGATGACGTTACAAGCAGGAACAACTTCCGATGTATTTTATCT
GTCTGATCTGTAGCACTGAAATGCGCGCTCGTCTCTTCTTATGTCGCATG
TTGCTCGATAGAGACTTGTCCTCGACAGGCGTTCGTTATGCGTGTGTGTA
ATATTGGATTTGCCAAACTCATCTTTCTTCACGATTAATTAATGAGTTTT
TACTATTTTCTAATCGGTTCTACCCTCTTCCCATCATCCCCCCCCCCCCC
TCCCCGCCCACTTCTTTCCTCTTACTATCTAACNNNNNNNNNNCCAACTC
CTTTTTTTTCACATTTTATTTATGATTTTTTTCTTTTTTTTTATTTTTTT
TCCCCCCTTCCCCCCCCCCCCCCCCCCCCCCCTCCCCGCCCACTTCTTTC
CTCTTACTATCTAACCGTGTGCGTGCGCTTCTCCTTTCCACGCAGCACTG
GCGCCTTATTGGCTGGGGGCAAATTAGGCGGGGAAACAAAATCGAGATTC
AAGGATCGAAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig65492:2078..3241-

>mRNA_H-elongata_contig65492.14131.1 ID=mRNA_H-elongata_contig65492.14131.1|Name=mRNA_H-elongata_contig65492.14131.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig65492:2078..3241- (Himanthalia elongata Himel1 dioecious)
ATGGTGAACATCGGGTCAACAGCCTCTGGCGGCAAAGTCTTGGCTGTGAA
GCAGATGGTGAACATCGGGTCAACAGCCTCTGGCGGCAAAGTCTTGGCTG
TGAAGCAGGACCTCGCGAAGATCCTGCTCACGCAGCCGGTTTGTACGCAG
GAGGGAGAGAAAATCGCGCTTTCGAGGCGTGTCGACAAGGACCTCGCGAA
GATCCTGCTCACGCAGCCGGTTTGTACGCAGGAGGGAGAGAAAATCGCGC
TTTCGAGGCGTGTCGACAAGCACTGGCGCCTTATTGGCTGGGGGCAAATT
AGGCGGGGAAACAAAATCGAGATTCAAGGATCGAAATAGCACTGGCGCCT
TATTGGCTGGGGGCAAATTAGGCGGGGAAACAAAATCGAGATTCAAGGAT
CGAAATAG
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