prot_H-elongata_contig65426.14124.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig65426.14124.1
Unique Nameprot_H-elongata_contig65426.14124.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: D7G6E6_ECTSI (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E6_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.630e-64
Identity = 102/122 (83.61%), Postives = 114/122 (93.44%), Query Frame = 0
Query:    4 AARQKHAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDER 125
            A  +K+AKTLADN IDH+SCVSSMRLLSLCSLATEHEEIPYQVVADTLQV GDD+VE+WVL+AI+TGLMEAKMDQMQRVVVIRRCTNRVFGP+QWKTLQ KLGTWS NV+ LL+ I+KS+ER
Sbjct:  275 AFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNER 396          
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A835Z3J7_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J7_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.860e-36
Identity = 65/112 (58.04%), Postives = 86/112 (76.79%), Query Frame = 0
Query:   13 LADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 124
            L  + I H+ CV +MRLLSLCSL +E +E+PY V+++TLQV  +D VEEWVL+A + GLMEA+MDQ+++VV+I RCT RVFG  QW +LQ KLG W  NV  LL TI++S+E
Sbjct:  286 LEKHGISHDECVGNMRLLSLCSLGSEAQEVPYSVISETLQVDPED-VEEWVLQATQAGLMEARMDQLEKVVLISRCTCRVFGKEQWLSLQAKLGQWKANVSGLLQTIQRSNE 396          
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S4S2I4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S2I4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 6.070e-35
Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 0
Query:    9 HAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 124
            ++ TL +  + ++ CV  MRLLSLCSLA EHEEIPY  +A TL VK D++VE WV+ A+ +GL+ AKMDQ+Q+VV++ RC  R FG  QWK LQT+L  W  NV+ +L  +K+S +
Sbjct:   35 NSPTLTEYGLSNDDCVRYMRLLSLCSLAAEHEEIPYGAIASTLHVK-DEEVESWVIAAVSSGLLSAKMDQLQQVVMVERCAVRKFGMEQWKMLQTRLNDWKRNVKGVLDGLKQSQQ 149          
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S2MXL1_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MXL1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.650e-32
Identity = 59/116 (50.86%), Postives = 83/116 (71.55%), Query Frame = 0
Query:    9 HAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 124
            ++ TL +  + ++ CV +MRLLSLCSLA EHEEIPY  +A TL VK D++VE WV+ A+ +GL+ AKMDQ+Q+VV++ RC  R FG  QWK LQ +L  W  NV+ +L  +K+S +
Sbjct:  302 NSPTLTEYGLSNDDCVRNMRLLSLCSLAAEHEEIPYSAIASTLHVK-DEEVESWVIAAVSSGLLSAKMDQLQQVVMVERCAVRKFGMDQWKVLQVRLNDWKKNVKGVLDGLKQSQQ 416          
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A6S8Z843_9STRA (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8Z843_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.960e-32
Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 0
Query:    9 HAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 124
            ++ TL +  + ++ CV  MRLLSLCSLA EHEEIPY  +A TL VK D++VE WV+ A+ +GL+ AKMDQ+Q+VV++ RC  R FG  QWK LQT+L  W  NV+ +L  +K+S +
Sbjct:  291 NSPTLTEYGLSNDDCVRYMRLLSLCSLAAEHEEIPYGAIASTLHVK-DEEVESWVIAAVSSGLLSAKMDQLQQVVMVERCAVRKFGMEQWKMLQTRLNDWKRNVKGVLDGLKQSQQ 405          
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S2CTT4_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTT4_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.940e-31
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 0
Query:   12 TLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKS 122
            T+    ++HE C+++MRLLSLCSLATEHEEIPY  +A+TL+V  ++ VE WV+      LM+AKMDQ+Q+VV+I RCT+RVF  SQWK L  +L TW  NV  +L TI+++
Sbjct:  269 TMERYGLEHEECIANMRLLSLCSLATEHEEIPYAAIAETLEVPLEE-VEYWVVATTTAKLMDAKMDQLQQVVMISRCTHRVFEHSQWKQLAERLTTWKINVRNILETIQRT 378          
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S2UD50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD50_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.520e-28
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 0
Query:   11 KTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTN 111
            K L  N ++ E CV  MRLLSLCSLA EHEEIPY  +  TL+V+ ++ VE WV+ A+ +GL+ AKMDQ+Q+VV++ RC  R FG  +WK+LQT+L TW  N
Sbjct:  304 KVLEKNGLNPEDCVRYMRLLSLCSLAAEHEEIPYAAIVSTLKVQPEE-VESWVITAVSSGLLLAKMDQLQQVVMVERCVVRRFGIEEWKSLQTRLHTWKKN 403          
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A7S1E674_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E674_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.480e-27
Identity = 52/116 (44.83%), Postives = 79/116 (68.10%), Query Frame = 0
Query:    8 KHAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSD 123
            K  + L+  +++ E C  +MR+LSLCSLATE EE+PY +VA TL V  +++VE WV+ A+ +GL+ AKMDQ+++ +++ R   R F   QWK LQ++L  W  NV  +L  +K+SD
Sbjct:   56 KKDEVLSKYSLNEEECTRNMRILSLCSLATEFEEVPYNLVATTLDVS-ENEVESWVIAAVSSGLLSAKMDQIEQRIMVERSVVRKFDMIQWKALQSQLQIWKHNVNGILEALKQSD 170          
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: A0A067FZM4_CITSI (Eukaryotic translation initiation factor 3 subunit M n=5 Tax=Citrus TaxID=2706 RepID=A0A067FZM4_CITSI)

HSP 1 Score: 112 bits (280), Expect = 6.350e-27
Identity = 53/106 (50.00%), Postives = 78/106 (73.58%), Query Frame = 0
Query:   20 HESCVSSMRLLSLCSLAT-EHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKSDE 124
            HE C++ MRL+SL  L + E  +IPY ++ DTLQ+  D+ VE+WV++A    LM+ KMDQM +VV++RRCT RVFG  QW+TL+TKL TW  NV  +++TI+ +++
Sbjct:  292 HEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDE-VEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNK 396          
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Match: K0RLU6_THAOC (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RLU6_THAOC)

HSP 1 Score: 112 bits (280), Expect = 8.330e-27
Identity = 53/106 (50.00%), Postives = 75/106 (70.75%), Query Frame = 0
Query:   17 NIDHESCVSSMRLLSLCSLATEHEEIPYQVVADTLQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKTLQTKLGTWSTNVEALLATIKKS 122
            N+  + C  +M LLSL SLA EHEEIPY  +A TL V+ +DDVE+WV+ A+ +GLMEAKMDQ+ +VV++ RC  R FG  +W  L+ +L  + TNV+ +L  ++KS
Sbjct:  328 NLSEDDCTKNMSLLSLVSLAGEHEEIPYSEIASTLSVE-EDDVEKWVIAAVASGLMEAKMDQLSKVVIVERCAVRQFGTKEWSALKIRLEKYKTNVKGVLDALEKS 432          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65426.14124.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6E6_ECTSI1.630e-6483.61Eukaryotic translation initiation factor 3 subunit... [more]
A0A835Z3J7_9STRA7.860e-3658.04Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4S2I4_9STRA6.070e-3551.72Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2MXL1_9STRA1.650e-3250.86Eukaryotic translation initiation factor 3 subunit... [more]
A0A6S8Z843_9STRA1.960e-3251.72Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2CTT4_9STRA3.940e-3154.05Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2UD50_9STRA5.520e-2854.46Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1E674_9STRA1.480e-2744.83Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A067FZM4_CITSI6.350e-2750.00Eukaryotic translation initiation factor 3 subunit... [more]
K0RLU6_THAOC8.330e-2750.00Eukaryotic translation initiation factor 3 subunit... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00753PINTcoord: 18..108
e-value: 2.8E-21
score: 86.7
NoneNo IPR availableGENE3D1.25.40.570coord: 3..117
e-value: 9.0E-15
score: 56.6
NoneNo IPR availablePANTHERPTHR15350COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17coord: 6..122
NoneNo IPR availablePANTHERPTHR15350:SF2EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Mcoord: 6..122
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 18..108
e-value: 2.8E-21
score: 86.7
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 8..86
e-value: 8.4E-13
score: 48.7
IPR000717Proteasome component (PCI) domainPROSITEPS50250PCIcoord: 1..90
score: 15.457
IPR040750eIF3 subunit M, C-terminal helix domainPFAMPF18005eIF3m_C_helixcoord: 91..119
e-value: 1.1E-10
score: 41.0
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 23..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65426contigH-elongata_contig65426:225..1389 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65426.14124.1mRNA_H-elongata_contig65426.14124.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig65426 225..1389 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig65426.14124.1 ID=prot_H-elongata_contig65426.14124.1|Name=mRNA_H-elongata_contig65426.14124.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MVCAARQKHAKTLADNNIDHESCVSSMRLLSLCSLATEHEEIPYQVVADT
LQVKGDDDVEEWVLRAIETGLMEAKMDQMQRVVVIRRCTNRVFGPSQWKT
LQTKLGTWSTNVEALLATIKKSDER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR040750eIF3m_C_helix
IPR036390WH_DNA-bd_sf