mRNA_H-elongata_contig65415.14123.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65415.14123.1
Unique NamemRNA_H-elongata_contig65415.14123.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65415.14123.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 8.090e-33
Identity = 67/118 (56.78%), Postives = 89/118 (75.42%), Query Frame = 1 
Query:    7 TVTMGSFDTVHCFSNEPYECEMLFDLASVTYTGDIKCQICNLDSERQYVGLDDETIGGDDDXXXXXXXXXXDSSEGIVIGLSLALGVTLVVIGGLAVWKFRVRRNARRLMDDMGDGDI 360
            TVTMG F+ ++CF+NEPYECE ++D + + ++G+ KCQIC+++ ERQ  G DD+ I   D             ++GIVIGLSLALG+TLVVIG LAVWKFRVR+NARRLM+DMG+GD+
Sbjct:  369 TVTMGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLI---DASERSIDGDSSSDNQGIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 483
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BLAST of mRNA_H-elongata_contig65415.14123.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.530e-13
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    7 TVTMGSFDTVHCFSNEPYECEMLFDLASVTYTGDIKCQICNLDSERQYVGLDDETIGGDDDXXXXXXXXXXDSSEGIVIGLSLALGVTLVVIGGLAVWKFRVRRNA 324
            TVTMG FD ++CF+NEPYECE ++D + + + G+ KCQIC++D  +Q  G D +  G  D           DS + I+IGLS AL + +++  G  V +   +  A
Sbjct:  369 TVTMGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLTGSIDQSSSSNSW---DSKDYIIIGLSAALALCIILAIGFLVARAYKKHRA 471
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65415.14123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVA4_ECTSI8.090e-3356.78Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]
D7FV99_ECTSI1.530e-1338.68Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65415contigH-elongata_contig65415:163..2913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2317
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65415.14123.1prot_H-elongata_contig65415.14123.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65415 2117..2898 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.7210467-UTR-H-elongata_contig65415:162..21161622931040.7210467-UTR-H-elongata_contig65415:162..2116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65415 163..2116 -
1691679673.501865-UTR-H-elongata_contig65415:162..21161691679673.501865-UTR-H-elongata_contig65415:162..2116Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65415 163..2116 -
1622931040.7731616-UTR-H-elongata_contig65415:2898..29131622931040.7731616-UTR-H-elongata_contig65415:2898..2913Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65415 2899..2913 -
1691679673.5265055-UTR-H-elongata_contig65415:2898..29131691679673.5265055-UTR-H-elongata_contig65415:2898..2913Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65415 2899..2913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.7378156-CDS-H-elongata_contig65415:2116..23031622931040.7378156-CDS-H-elongata_contig65415:2116..2303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65415 2117..2303 -
1691679673.5103683-CDS-H-elongata_contig65415:2116..23031691679673.5103683-CDS-H-elongata_contig65415:2116..2303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65415 2117..2303 -
1622931040.7567503-CDS-H-elongata_contig65415:2737..28981622931040.7567503-CDS-H-elongata_contig65415:2737..2898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65415 2738..2898 -
1691679673.5187037-CDS-H-elongata_contig65415:2737..28981691679673.5187037-CDS-H-elongata_contig65415:2737..2898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65415 2738..2898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65415.14123.1

>prot_H-elongata_contig65415.14123.1 ID=prot_H-elongata_contig65415.14123.1|Name=mRNA_H-elongata_contig65415.14123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MGSFDTVHCFSNEPYECEMLFDLASVTYTGDIKCQICNLDSERQYVGLDD
ETIGGDDDGDSSSSSRSSDSSEGIVIGLSLALGVTLVVIGGLAVWKFRVR
RNARRLMDDMGDGDI*
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mRNA from alignment at H-elongata_contig65415:163..2913-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65415.14123.1 ID=mRNA_H-elongata_contig65415.14123.1|Name=mRNA_H-elongata_contig65415.14123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2751bp|location=Sequence derived from alignment at H-elongata_contig65415:163..2913- (Himanthalia elongata Himel1 dioecious)
GATGAGACTGTGACCATGGGCAGCTTCGACACGGTCCACTGTTTTTCCAA
TGAACCGTACGAGTGCGAAATGCTGTTCGACCTGGCGTCGGTGACATACA
CCGGAGACATCAAGTGTCAGATCTGCAACTTGGACAGCGAGAGGCAATAT
GTCGGGTTGGATGACGAGACGATCGGGTGAGCGTATTTAATATTATTAGT
CAAAATCAAAATATTTTGGCGGTGGTTCAGAAACTTTGTTAAAATATCCA
ATTTTCGACAGATGATGGTTTGCACGAATATTACAGTATGAAAAACAGAC
TTGAAGCGAGATGGCTTCACGCGATATATGGAGGCGAAAAAAGTATCGCG
TGGTCCTTCAAATTTGAAAAATTGGGTTTTTAGTTTTTGAACGCTCCTCG
TTGCGCCTCTCGCCCCTCACATCCACAAGACATTCATCGACATACTTTTT
GATGGAGGTAAAGATTTTCTTTGCTTGATAAAGAACCGATTCAGTCTTTT
ATTGTCATCACCCATTTTGACGTCAAATTATAAATTAAATTGAAATTATT
TGAATTGACAATGCTTCAACATTTACCGCTTGGCTGTATATCATGACGTC
ATCAATACAGCGGAGACGATGACGGCGATAGCAGTTCCAGCTCCCGATCG
TCGGATTCCAGCGAGGGTATTGTCATTGGGCTATCGCTCGCTCTTGGCGT
GACGCTGGTCGTCATCGGAGGGTTGGCTGTTTGGAAGTTTAGGGTACGCA
GGAACGCACGCCGTCTGATGGATGACATGGGCGACGGTGACATCTGATTG
GCCTACTGGAGGTCTCGACCAGGGAAGCTTAGATGGAAAAGCGGGGGAGA
GGGAGCAGGGCTCTGGAGGCGTGATGCTGCCGGAACAGACTAATTCCGTA
TCCACCTGTCGTTGACGTGAAAATTCGGAACCCGGCTTTTTTCCAAGCTT
TGAAAAGGATTCTCTAGAAGAGTTTCAAGGTGTGATGGATGATGATTGAT
GGTTGATGGTGGTTAATGGTTTTTCTTCCCCACCCACCCACGGTTACCCA
CGCGTACTTTCCTCGTGAAGCATTGAGTGAATGGCATCGAGATCAAAGGT
GTTCTCGATGGTGGTGGATCGAGAGCACCCACAAAGGCCAGGCCATGATC
AGTGTTGTGGTAGGCCGGCCTAACGTGGCTGGGATGACTATTGGGGCTTT
TGCGACTTGTCGATTCTTGATAACTTGATGGAAGGAGGCTGCTGGCGCTC
TGGAGTCGTAAGTTTATAGGCTACTGGCTTATGTGCTGAAACAGGGGGAG
GGGGGGGGAGGATTACATGGCAATAAAGCATAATTTGTAGCGGTAGCCAA
AAGCTAGTATATACCTCCTATATGTGTTGCGGCGTTCAAAATGCCATCGA
TGCGACTTGGTCGGTCGGCACGATGGTGAGATGATCGCAGGCAGGCTGCC
GATGGAACTTCATGAATTTTTCATAAAATTGCCTCTTCCGTATTCGTTTG
TCCCGAGGCCTTGGTCTTCGGCACCCTGGATGAAAAAAAAGGGTTGGGAG
TCAGGCGGATTTATCTCTTAAAAGTACTTAATAGTAATTTGTAGTAGTAA
AAAGGTACGTTTTCATTTGGGGTACTTGTGATCCATAAGGGCGTAATATG
TCATAATCTGCCATAGCTATCGCATAAAATGATATCTTCCTCTACTCTTA
ACGCATTGTTGGCGTGTATCAAGAGGTTGATATATTGTGGTCAGATTGTG
ACCACAAACATAGTGGTCGGTTGACCTGGCTTGATTCTCATGCGCGTGTA
GTATGTGGCAATGTCTGACTCTCTTGGCAGGACCTCAATCGTCTATCGTC
TACACTCAATCGTAGATATTGCTCCTCGTGTAGAAGAAACCTACAGCGTA
ATTTGCCAGTCATCAACAGATATGGTGATGTCTGCTGTGTTCCTCTCTAA
TGAATAAGGAATATTAAAAAAATAAAATCCGTCGGCTCTCCGGAGAGCTC
ACGGATGGGGAATGTGCCTAGAGAGAACTTGGCGTGTTCAAAAGATGTGT
TTTGGGAAGAAGCAAAAAAATATGCATGATGTTGGAGCTCTTCTTACTCT
GTCGAGTGGCGAATGGGTTCAATAGTTTTCAATTAGGAAGCGTTTCTTAT
GGTTTTTGAAACGATGCGTCGACCCTCAAGGCCGCAAGGGCGTGTTTGTT
GTAGTTTAAGGTATATAACCTAAGGCCATATCACCAACGGCATGATCTTT
CATTTTCATTTGTTTTTTTTCTACTTCAGGGAAGTTTTTTTGCTTTTTAA
AAATTGTTTCTTTTCCTCCGTCATTTTGGTAATTTCCCTCCCGATATTTA
GCTCGAACTGCAGTCGCAATCTTGTATGGTTGATGTTACATTTCAGTGGA
ATGTAGAGCCGATGACTTCGAAGGTATTTAGTTTCTTTTTTAGCCTTTCT
TCTGAGAAACAAATCTCCCGGGCGATCAATGGGATTTTCCGTAGCAAGCA
GCTGATGTCGGGTGTCTCATTCACAAAATAATAATCTTATAACCAAAAAC
GACCTAATTCTGCGATGTACTTCTGATAAAGTATGTTTTTGAACGGTTCA
GTCCGTTCCTCCGATGTAGAAGATTTTACGGTACTGTTACTGTTACTCCG
AAAGGTCACACTTATTAATAATACCCACCAGGTATACTGTGGCAAAATGT
CATTAACGGTACCCTAATCATAGCATCCGTTCAAATTTCACCGATATGAG
C
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Coding sequence (CDS) from alignment at H-elongata_contig65415:163..2913-

>mRNA_H-elongata_contig65415.14123.1 ID=mRNA_H-elongata_contig65415.14123.1|Name=mRNA_H-elongata_contig65415.14123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig65415:163..2913- (Himanthalia elongata Himel1 dioecious)
ATGGGCAGCTTCGACACGGTCCACTGTTTTTCCAATGAACCGTACGAGTG
CGAAATGCTGTTCGACCTGGCGTCGGTGACATACACCGGAGACATCAAGT
GTCAGATCTGCAACTTGGACAGCGAGAGGCAATATGTCGGGTTGGATGAC
GAGACGATCGGATGGGCAGCTTCGACACGGTCCACTGTTTTTCCAATGAA
CCGTACGAGTGCGAAATGCTGTTCGACCTGGCGTCGGTGACATACACCGG
AGACATCAAGTGTCAGATCTGCAACTTGGACAGCGAGAGGCAATATGTCG
GGTTGGATGACGAGACGATCGGCGGAGACGATGACGGCGATAGCAGTTCC
AGCTCCCGATCGTCGGATTCCAGCGAGGGTATTGTCATTGGGCTATCGCT
CGCTCTTGGCGTGACGCTGGTCGTCATCGGAGGGTTGGCTGTTTGGAAGT
TTAGGGTACGCAGGAACGCACGCCGTCTGATGGATGACATGGGCGACGGT
GACATCTGACGGAGACGATGACGGCGATAGCAGTTCCAGCTCCCGATCGT
CGGATTCCAGCGAGGGTATTGTCATTGGGCTATCGCTCGCTCTTGGCGTG
ACGCTGGTCGTCATCGGAGGGTTGGCTGTTTGGAAGTTTAGGGTACGCAG
GAACGCACGCCGTCTGATGGATGACATGGGCGACGGTGACATCTGA
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