mRNA_H-elongata_contig65310.14119.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65310.14119.1
Unique NamemRNA_H-elongata_contig65310.14119.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig65310.14119.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.120e-15
Identity = 51/174 (29.31%), Postives = 94/174 (54.02%), Query Frame = 1 
Query:    4 NDAGESLSARTLYDRLYCYNEVIKQLKYQHGITK-----VSALAMHKAYSQVGTTTQSVQTLRSWKKALGGLSQEAFDAIRDVFQSEEKSVDANAISLSILTKQPFMNLKYTSACTQQGLVVHILARFKHVYRTAPKSEDLDG--IIKRASTGVVLVRSVERCIPRKEWTEAFQ 504
            NDA  + + RT+YDRLY ++ + K  +     ++     V+   + + Y++      S  TLRSW KA+ G+ +EA  A++D+ +SE+KS+D N ++L+ ++K  FM L    +  +QG  + ILAR+K   +      D+D   II +A        ++   +P ++W++  +
Sbjct:  108 NDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKEFYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMAL----SAEEQGFNLQILARWKKFQQGRAFKADIDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELK 277
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BLAST of mRNA_H-elongata_contig65310.14119.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 4.310e-10
Identity = 40/125 (32.00%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:  139 QVGTTTQSVQTLRSWKKALGGLSQEAFDAIRDVFQSEEKSVDANAISLSILTKQPFMNLKYTSACTQQGLVVHILARFKHVYRTAPKSEDLDG--IIKRASTGVVLVRSVERCIPRKEWTEAFQR 507
            Q      S  TLRSW KA+ G+ +EA  A++D+ +SE+KS+D N ++L+ ++K  FM L    +  +QG  + ILAR+K   +      D+D   II +A        ++   +P ++W++  +R
Sbjct:   19 QAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMAL----SAEEQGFNLQILARWKKFQQGRAFKADVDTPPIIAQAKDVAQWYFALCGIVPYQDWSQELKR 139
[Close]
BLAST of mRNA_H-elongata_contig65310.14119.1 vs. uniprot
Match: A0A6H5JDB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 9.150e-5
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 1 
Query:  100 TKVSALAMHKAYSQVGTTTQSVQTLRSWKKALGGLSQEAFDAIRDVFQSEEKSVDANAISLSILTKQPFMNLKYTSACTQQGLVVHILARFKH--VYRTAPKSEDLDGIIKRA 432
            +KV+A  +  AY + G    S  +L S K+ +  L   AF A+++V +SEEK VD  ++S ++L     +   +     +Q L++HILARFK     +  P   DL  + +RA
Sbjct:  283 SKVTARMLSDAYKKSGDAPPSNPSLCSHKRLVIRLKGPAFAALKEVSESEEKGVDMQSLSKTLLDCDAVLKFPF-GRDFEQSLLIHILARFKSNDPGKKMPVKSDLPKLRQRA 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65310.14119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KN26_9PHAE5.120e-1529.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJG8_ECTSI4.310e-1032.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDB1_9PHAE9.150e-532.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65310contigH-elongata_contig65310:272..2829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size512
Cds size510
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65310.14119.1prot_H-elongata_contig65310.14119.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65310 272..2829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.3825262-CDS-H-elongata_contig65310:271..4131622931040.3825262-CDS-H-elongata_contig65310:271..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65310 272..413 -
1691679673.3464687-CDS-H-elongata_contig65310:271..4131691679673.3464687-CDS-H-elongata_contig65310:271..413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65310 272..413 -
1622931040.3991363-CDS-H-elongata_contig65310:975..12021622931040.3991363-CDS-H-elongata_contig65310:975..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65310 976..1202 -
1691679673.356564-CDS-H-elongata_contig65310:975..12021691679673.356564-CDS-H-elongata_contig65310:975..1202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65310 976..1202 -
1622931040.4168139-CDS-H-elongata_contig65310:2688..28291622931040.4168139-CDS-H-elongata_contig65310:2688..2829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65310 2689..2829 -
1691679673.3659723-CDS-H-elongata_contig65310:2688..28291691679673.3659723-CDS-H-elongata_contig65310:2688..2829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65310 2689..2829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65310.14119.1

>prot_H-elongata_contig65310.14119.1 ID=prot_H-elongata_contig65310.14119.1|Name=mRNA_H-elongata_contig65310.14119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
FNDAGESLSARTLYDRLYCYNEVIKQLKYQHGITKVSALAMHKAYSQVGT
TTQSVQTLRSWKKALGGLSQEAFDAIRDVFQSEEKSVDANAISLSILTKQ
PFMNLKYTSACTQQGLVVHILARFKHVYRTAPKSEDLDGIIKRASTGVVL
VRSVERCIPRKEWTEAFQR*
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mRNA from alignment at H-elongata_contig65310:272..2829-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65310.14119.1 ID=mRNA_H-elongata_contig65310.14119.1|Name=mRNA_H-elongata_contig65310.14119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2558bp|location=Sequence derived from alignment at H-elongata_contig65310:272..2829- (Himanthalia elongata Himel1 dioecious)
TTTAACGATGCCGGAGAATCGCTTTCGGCGAGGACATTGTACGATCGGCT
GTACTGTTACAATGAGGTCATCAAGCAATTAAAATATCAGCATGGAATTA
CGAAGGTTTCGGCTCTGGCAATGCACAAGGCTTACTCCCAGGTAAGCTTT
GTACGTAGGGAGAACAAGCCCTAATGAAATTGCTCTTGGTCACGATGGTG
TTTGTTCCTTAATCCGCCATAATACAATAAAGAACTGATTCGAATCGGTT
CTTCATTTTGTTTTGGCGCCAAAGTTGAGCATCGACCCATTCCAAAAAAT
TAAGTGTTTGGGGTCGGAACGTTGATTGGCTGTACGGACCGATCCCCTTG
ATGAGATTTCAAGAGAGTAATCCAACGTTAACGTTAGTATTGTACTAATA
GCATAGGGTTACAAGTGTAATATTGGCAGCTAGCTATCAACTGTCTACAA
CCTTTTTCGTTTTTTCCTTATCTTTCCGGGTATTTCGTACCATTTTTTTA
CATTTCCTCTTTCTAAGAGCACGTTGTAAAGGAGGGGGGGGGGCTGGTTT
ACATATACCGCCCCCCCTCCACCCCCTTATGGGAAGCTATCCCTGAAGGC
GTTGGATTGGCTTATCCTACTCGCGTTTCTTACGCAACCGCGCTGGACTA
CCCCTACAACTCTCTCTTTCCTGCCCCTGCTGCCCCACCTCTGGGCGCAC
CAGGGCATTAGCATTTCGAATACCACTACCGCCCCACCCCCGTATGTTAC
CAGCTCGGTTGAGGTCTCCGTCCCGCTTCCGATCTGGCGAATTCTCGACG
CTTGCGGGACGGCCATCATCGCTACTACTAGTACTATTGCCGTAACCAGC
GCCGCCGCATTTGCCACTCTGGCGATGGGTACCCGCGCCTCGATCCCTCC
CGCCTCCTCTCTCAACACTGCGGCGTTGGTGACCGGCGTATCATCACCCT
TAATTCCTGCAGCTTGTATTATCGCTACAGGGGCTGGCAGCTCAGGCCCT
ACATCGTGGTCACTACAACCGCGCCCGCTCCAGGCCCTGCATACCCCATT
GTCACTTCAACTGGTCGTGCTGCTGCTGCCTGTGCGATCGGTTTCTCGAC
TTCGGTCGGTACCGGTGACGCGAGGCTCCCTTTAACTCCCTCCTCTGCCG
CCCCCGTCGCCGCGGCATTCAACCCAAAGATCTCCTCTTCGGCTGGCTTC
CTCTTCCTCTTCCTCCTCTGCCACTACCGCTGTTCTGGCGCGGTACCTTG
TACCTTTGCTTATCGCTAGAGCTAGGCTGTCCGCTGGAGGCGTGGCTGGT
CGACCGACAGCTCGGGTCATAGCCTCGCGGAATGCGCCCGGTTCAGGACG
AATGTCGACGAAAGTCTGTTGTCCCCGTGCAGCTGCTCATTGATCACCCT
CCAGATATTCTCGCTTGAGCATCCGGTGAGTCGCGACGGTCTGATAGAAT
TTGACCGTGTCCTCGCCGTCCTGTTCAGCAGACACGAACCGGCTTGGCAA
CATTACCCCGTTGATCCACCTCTACTAATATACCTATTGATGACATACAA
AAATCACTGGGCGATTTGAATGTTAATCCGAAAACTGTGTTTGTTTTTAC
ATCATGCTTGTTGGCGTCACGCTGCAGGTGGGCACCACTACGCAAAGTGT
TCAGACACTCCGTTCGTGGAAAAAGGCTCTCGGGGGTCTGTCACAGGAAG
CGTTCGACGCGATTCGAGACGTGTTTCAGAGCGAAGAAAAGTCCGTCGAT
GCTAATGCCATTTCGCTCAGCATCCTGACGAAGCAGCCTTTCATGAACCT
GAAGTACACGTCTGCCTGTACCCAACAAGGGCTTGTGGTGCACATCCTCG
CCAGGTTTGTGTTTGAATTGTGCGACGTTGCCACACATAAACGTTTATGC
ATTCTTACTTGATACATGCAAAAAGTAGTTAACTATAGTAGTTGTGTCTG
TTGTTTTCAAAACCACGTTTGGATGTTGTAGTGGTTAAAAGTTTCCGAGG
CTAGCGCCCTCTAGGCGTGGAAGTTAAATATTTTTAAAACCTCAACGACT
GAAAATAAATTGCTACGACTTACCTAGTTATTTCTTTGTTTAGCTACGAC
TTACGGGTAAGCTGACGTCAAAATCTAACCCGTGGTCACACGGTAGAAAA
AACACCATCCGGAAGGAGACAAACGTTCAAGGTACTCTCCATGTTCCTCC
TCGAAAGGCACTGGTCTCCACCCCCAACACCGCGATATGAGTGAATTGTC
CCTACTTTCAAGAAATTTTCTACTGTGTAAAAATATATTGGGAACACTTT
CGAAGTTCACTACTACGCAAATTTTGACCACCTCATCCTAATATCCTAAT
ATACTACACATTACGTGAGTACTACACCCTTCTGTGCCGTCCATCTTTCG
GAAACATTTGGAACAGGTTCAAGCATGTATACAGGACGGCCCCGAAATCG
GAAGACCTCGATGGAATCATCAAGCGGGCGTCCACCGGTGTCGTCCTTGT
CCGGTCTGTGGAGCGATGCATCCCCCGTAAGGAGTGGACGGAGGCCTTCC
AAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig65310:272..2829-

>mRNA_H-elongata_contig65310.14119.1 ID=mRNA_H-elongata_contig65310.14119.1|Name=mRNA_H-elongata_contig65310.14119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig65310:272..2829- (Himanthalia elongata Himel1 dioecious)
TTTAACGATGCCGGAGAATCGCTTTCGGCGAGGACATTGTACGATCGGCT
GTACTGTTACAATGAGGTCATCAAGCAATTAAAATATCAGCATGGAATTA
CGAAGGTTTCGGCTCTGGCAATGCACAAGGCTTACTCCCAGTTTAACGAT
GCCGGAGAATCGCTTTCGGCGAGGACATTGTACGATCGGCTGTACTGTTA
CAATGAGGTCATCAAGCAATTAAAATATCAGCATGGAATTACGAAGGTTT
CGGCTCTGGCAATGCACAAGGCTTACTCCCAGGTGGGCACCACTACGCAA
AGTGTTCAGACACTCCGTTCGTGGAAAAAGGCTCTCGGGGGTCTGTCACA
GGAAGCGTTCGACGCGATTCGAGACGTGTTTCAGAGCGAAGAAAAGTCCG
TCGATGCTAATGCCATTTCGCTCAGCATCCTGACGAAGCAGCCTTTCATG
AACCTGAAGTACACGTCTGCCTGTACCCAACAAGGGCTTGTGGTGCACAT
CCTCGCCAGGTGGGCACCACTACGCAAAGTGTTCAGACACTCCGTTCGTG
GAAAAAGGCTCTCGGGGGTCTGTCACAGGAAGCGTTCGACGCGATTCGAG
ACGTGTTTCAGAGCGAAGAAAAGTCCGTCGATGCTAATGCCATTTCGCTC
AGCATCCTGACGAAGCAGCCTTTCATGAACCTGAAGTACACGTCTGCCTG
TACCCAACAAGGGCTTGTGGTGCACATCCTCGCCAGGTTCAAGCATGTAT
ACAGGACGGCCCCGAAATCGGAAGACCTCGATGGAATCATCAAGCGGGCG
TCCACCGGTGTCGTCCTTGTCCGGTCTGTGGAGCGATGCATCCCCCGTAA
GGAGTGGACGGAGGCCTTCCAAAGGTGAGTTCAAGCATGTATACAGGACG
GCCCCGAAATCGGAAGACCTCGATGGAATCATCAAGCGGGCGTCCACCGG
TGTCGTCCTTGTCCGGTCTGTGGAGCGATGCATCCCCCGTAAGGAGTGGA
CGGAGGCCTTCCAAAGGTGA
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