mRNA_H-elongata_contig65291.14117.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig65291.14117.1
Unique NamemRNA_H-elongata_contig65291.14117.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig65291.14117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig65291contigH-elongata_contig65291:1838..3223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size865
Cds size591
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig65291.14117.1prot_H-elongata_contig65291.14117.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig65291 2568..3223 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.1938536-UTR-H-elongata_contig65291:1837..19011622931040.1938536-UTR-H-elongata_contig65291:1837..1901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65291 1838..1901 -
1691679673.2564032-UTR-H-elongata_contig65291:1837..19011691679673.2564032-UTR-H-elongata_contig65291:1837..1901Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65291 1838..1901 -
1622931040.20889-UTR-H-elongata_contig65291:2020..22111622931040.20889-UTR-H-elongata_contig65291:2020..2211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65291 2021..2211 -
1691679673.2735384-UTR-H-elongata_contig65291:2020..22111691679673.2735384-UTR-H-elongata_contig65291:2020..2211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65291 2021..2211 -
1622931040.2221942-UTR-H-elongata_contig65291:2550..25671622931040.2221942-UTR-H-elongata_contig65291:2550..2567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65291 2551..2567 -
1691679673.2815776-UTR-H-elongata_contig65291:2550..25671691679673.2815776-UTR-H-elongata_contig65291:2550..2567Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig65291 2551..2567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.2394748-CDS-H-elongata_contig65291:2567..25831622931040.2394748-CDS-H-elongata_contig65291:2567..2583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65291 2568..2583 -
1691679673.2913244-CDS-H-elongata_contig65291:2567..25831691679673.2913244-CDS-H-elongata_contig65291:2567..2583Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65291 2568..2583 -
1622931040.2570634-CDS-H-elongata_contig65291:2648..32231622931040.2570634-CDS-H-elongata_contig65291:2648..3223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65291 2649..3223 -
1691679673.3002417-CDS-H-elongata_contig65291:2648..32231691679673.3002417-CDS-H-elongata_contig65291:2648..3223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig65291 2649..3223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig65291.14117.1

>prot_H-elongata_contig65291.14117.1 ID=prot_H-elongata_contig65291.14117.1|Name=mRNA_H-elongata_contig65291.14117.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
DVVETDQVTLEEETKLSLNISPSSHASGTWSGSGSLSRDAPNSHAHASFF
SPGSRQQHALVHANQSPGIGTSSRWLLNVSHDSEKVGTVSQFGKRPYSCM
NHPLQEEMEDCSTSTKGDKKMTASNERRNDRMTSPSQENTLDEASVSPIH
LCRDDQAIGDRVDDDRLQHKPQGTTDSCHGFEAEDQVDETSPHGRT*
back to top

mRNA from alignment at H-elongata_contig65291:1838..3223-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig65291.14117.1 ID=mRNA_H-elongata_contig65291.14117.1|Name=mRNA_H-elongata_contig65291.14117.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1386bp|location=Sequence derived from alignment at H-elongata_contig65291:1838..3223- (Himanthalia elongata Himel1 dioecious)
GATGTCGTCGAAACCGACCAGGTCACGTTGGAAGAGGAAACTAAGCTCTC
GTTGAACATATCGCCATCATCACACGCCTCAGGAACTTGGAGCGGCTCAG
GCTCTCTCTCCCGAGATGCCCCTAACAGCCATGCACATGCTTCCTTCTTC
TCTCCAGGTTCGAGGCAGCAACACGCCTTGGTTCACGCAAACCAGTCTCC
GGGTATAGGAACCTCTTCAAGGTGGCTTTTGAACGTATCTCACGACAGTG
AGAAGGTCGGAACTGTTAGCCAGTTTGGGAAGCGTCCTTATTCGTGCATG
AACCACCCACTTCAAGAAGAGATGGAAGATTGCTCCACTTCCACGAAGGG
CGATAAGAAAATGACAGCATCGAACGAGAGGAGAAATGATCGAATGACAT
CTCCATCCCAGGAAAACACACTGGATGAGGCATCTGTGTCACCTATACAC
CTCTGTCGAGACGATCAAGCGATAGGTGATCGGGTTGATGATGATCGCTT
GCAGCACAAACCGCAAGGTACGACAGATAGCTGCCATGGATTTGAAGCGG
AAGATCAGGTGGACGAAACCTCGCCGTATGGGCCAGCAGAGATGCCTAAA
TCTACAATCCTGCACGGACAATTTTTAGGCTCCCTTGGAGGCATGGTCGA
ACTTGATGATACGCATCAGAAAGGTTTGTTTGGTGATGTTCATTGCTTAA
TGTTGATATTTCGCACCAACATAAGCTGTATTTCATGAAATTATCGTATG
GCTAAGTAAGAATTCCCAAACGAGACCCCGCGAAACATTTCAGCACGGGT
AACCCCGAACGAAAGTTTCGACATGAGCAAGGAGAAAAAGGTTGATAATT
TCTTTCCCAAGTAGGTAAATTCGATGAATTTGAGCCGATCCAGCCAGTTG
CATTTACTGGTTTCAGACATAATAATTATAGTTTTATTGGCAGATGTACC
ACTGATGACTTCCTCTCGTGAGTTAACTCGTTACCTCTTCGGCTTGATAA
TTTGCGCTAAAGAGTTCACAGAGGAAGCGATTCACAGCGGTACGCCACAC
GTTGTGAGGGCGGTCTTGAAGGCCTTAAGGGAGCCGAGAGCCTTTGGAAA
ACTCACGGATGCTGCCTTCATCGCGGCTGCCGCTAGAGATGGAGGTGGAG
AGCTGTTCGAAACACTTCTCGACGCGATTCAGGACAAAATATCCATTCGA
GAGGTCAGCAACATACTGCATGCAACCACTAATTTCCTAACATCCGACAG
AAGGTAAACCTCCCGTGCTTCCGTAGCTCGAATTTTCTCATACATTTCAT
ATAATTCGGCAACCTATCTCAGGTGTGCACGGTACTCTCGTCAGCGTTAC
ATGTGGCAGCGGCGGACGCTTCAAGAGATCTGCGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig65291:1838..3223-

>mRNA_H-elongata_contig65291.14117.1 ID=mRNA_H-elongata_contig65291.14117.1|Name=mRNA_H-elongata_contig65291.14117.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig65291:1838..3223- (Himanthalia elongata Himel1 dioecious)
GATGTCGTCGAAACCGACCAGGTCACGTTGGAAGAGGAAACTAAGCTCTC
GTTGAACATATCGCCATCATCACACGCCTCAGGAACTTGGAGCGGCTCAG
GCTCTCTCTCCCGAGATGCCCCTAACAGCCATGCACATGCTTCCTTCTTC
TCTCCAGGTTCGAGGCAGCAACACGCCTTGGTTCACGCAAACCAGTCTCC
GGGTATAGGAACCTCTTCAAGGTGGCTTTTGAACGTATCTCACGACAGTG
AGAAGGTCGGAACTGTTAGCCAGTTTGGGAAGCGTCCTTATTCGTGCATG
AACCACCCACTTCAAGAAGAGATGGAAGATTGCTCCACTTCCACGAAGGG
CGATAAGAAAATGACAGCATCGAACGAGAGGAGAAATGATCGAATGACAT
CTCCATCCCAGGAAAACACACTGGATGAGGCATCTGTGTCACCTATACAC
CTCTGTCGAGACGATCAAGCGATAGGTGATCGGGTTGATGATGATCGCTT
GCAGCACAAACCGCAAGGTACGACAGATAGCTGCCATGGATTTGAAGCGG
AAGATCAGGTGGACGAAACCTCGCCGATGTCGTCGAAACCGACCAGGTCA
CGTTGGAAGAGGAAACTAAGCTCTCGTTGAACATATCGCCATCATCACAC
GCCTCAGGAACTTGGAGCGGCTCAGGCTCTCTCTCCCGAGATGCCCCTAA
CAGCCATGCACATGCTTCCTTCTTCTCTCCAGGTTCGAGGCAGCAACACG
CCTTGGTTCACGCAAACCAGTCTCCGGGTATAGGAACCTCTTCAAGGTGG
CTTTTGAACGTATCTCACGACAGTGAGAAGGTCGGAACTGTTAGCCAGTT
TGGGAAGCGTCCTTATTCGTGCATGAACCACCCACTTCAAGAAGAGATGG
AAGATTGCTCCACTTCCACGAAGGGCGATAAGAAAATGACAGCATCGAAC
GAGAGGAGAAATGATCGAATGACATCTCCATCCCAGGAAAACACACTGGA
TGAGGCATCTGTGTCACCTATACACCTCTGTCGAGACGATCAAGCGATAG
GTGATCGGGTTGATGATGATCGCTTGCAGCACAAACCGCAAGGTACGACA
GATAGCTGCCATGGATTTGAAGCGGAAGATCAGGTGGACGAAACCTCGCC
GCATGGTCGAACTTGAGCATGGTCGAACTTGA
back to top