mRNA_H-elongata_contig6528.14116.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6528.14116.1
Unique NamemRNA_H-elongata_contig6528.14116.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6528.14116.1 vs. uniprot
Match: D7G7E0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7E0_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 3.170e-48
Identity = 86/146 (58.90%), Postives = 107/146 (73.29%), Query Frame = 3 
Query:    9 MSRPEAQAAAKTMYDQRVPEMNPDVLRQALELGPAQKTVVSRQKLVPDESELEVSKTPRPLPRNRSRVVSTANEVDETKGLLTQTQLAELLKRLVPPSGEAPSPELNKSVAGDFHVSEDSTALLARYYRAPDVRMSGDVMTARWKW 446
            MSRP+AQAAAK MYDQ+VP+MN D+LRQA+ +GP  K  ++ QKLVPD SE+  SKTPRPLP++R+R V+ + EVD  KGLLTQTQLA  L+R V     +P P     +  +FHVSE+  A+L RY RAPD+RM  DVMTARW W
Sbjct:    1 MSRPDAQAAAKKMYDQQVPDMNADILRQAMAMGPVGKAELTHQKLVPDASEMVTSKTPRPLPKDRTRAVAKSGEVDAKKGLLTQTQLAAFLERRVANGAGSPPPA---GLLEEFHVSEEDAAVLLRYCRAPDIRMYEDVMTARWHW 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6528.14116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7E0_ECTSI3.170e-4858.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6528contigH-elongata_contig6528:6145..7737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_003180.1
Exons3
Model size734
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6528.14116.1prot_H-elongata_contig6528.14116.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6528 6427..7729 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.0696516-UTR-H-elongata_contig6528:6144..64261622931040.0696516-UTR-H-elongata_contig6528:6144..6426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6528 6145..6426 -
1691679673.2177172-UTR-H-elongata_contig6528:6144..64261691679673.2177172-UTR-H-elongata_contig6528:6144..6426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6528 6145..6426 -
1622931040.136687-UTR-H-elongata_contig6528:7729..77371622931040.136687-UTR-H-elongata_contig6528:7729..7737Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6528 7730..7737 -
1691679673.2485123-UTR-H-elongata_contig6528:7729..77371691679673.2485123-UTR-H-elongata_contig6528:7729..7737Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6528 7730..7737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.0848753-CDS-H-elongata_contig6528:6426..65921622931040.0848753-CDS-H-elongata_contig6528:6426..6592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6528 6427..6592 -
1691679673.225295-CDS-H-elongata_contig6528:6426..65921691679673.225295-CDS-H-elongata_contig6528:6426..6592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6528 6427..6592 -
1622931040.1027658-CDS-H-elongata_contig6528:6992..71411622931040.1027658-CDS-H-elongata_contig6528:6992..7141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6528 6993..7141 -
1691679673.2330208-CDS-H-elongata_contig6528:6992..71411691679673.2330208-CDS-H-elongata_contig6528:6992..7141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6528 6993..7141 -
1622931040.1197019-CDS-H-elongata_contig6528:7600..77291622931040.1197019-CDS-H-elongata_contig6528:7600..7729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6528 7601..7729 -
1691679673.240651-CDS-H-elongata_contig6528:7600..77291691679673.240651-CDS-H-elongata_contig6528:7600..7729Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6528 7601..7729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6528.14116.1

>prot_H-elongata_contig6528.14116.1 ID=prot_H-elongata_contig6528.14116.1|Name=mRNA_H-elongata_contig6528.14116.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MSRPEAQAAAKTMYDQRVPEMNPDVLRQALELGPAQKTVVSRQKLVPDES
ELEVSKTPRPLPRNRSRVVSTANEVDETKGLLTQTQLAELLKRLVPPSGE
APSPELNKSVAGDFHVSEDSTALLARYYRAPDVRMSGDVMTARWKWR*
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mRNA from alignment at H-elongata_contig6528:6145..7737-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6528.14116.1 ID=mRNA_H-elongata_contig6528.14116.1|Name=mRNA_H-elongata_contig6528.14116.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1593bp|location=Sequence derived from alignment at H-elongata_contig6528:6145..7737- (Himanthalia elongata Himel1 dioecious)
TCGTGGAGATGTCAAGACCCGAGGCGCAAGCCGCGGCGAAGACCATGTAC
GACCAACGGGTTCCCGAGATGAACCCAGACGTACTGCGACAGGCGTTGGA
GCTAGGGCCCGCGCAGAAGACGGTGGTTTCACGCCAGGCGAGCAACGCAG
CTGTGGCGCTGCTGTTCGTTTGTGGCTCGTGTCCCTCGTGGTTGACCTAC
GCGCGTGATGACTCGTCCAGCCCGAGGCAGGCGGGCTGGGGTGGCCCGTC
CCTCGGGAGGAGCGGACTCACCGGTAGAAAATATTTGTGCGCCTCGCTAG
GAGGATTTTTTTTTTTTTAACCTCCACCGACCAATCATGGCCTCAAAACT
TCCCCCATATTTTTCTTGGCAATCGTGAACACGCACGAACACACGCGTCC
GACACAGACAGCATGACCCGACTAAATGTCTTCGAGACCTGCTCGTAGCT
CATCCAATTGCCTCGTCGCGCGATCGCAGCTCATAGCCCACCCCACTCCC
CCACCGTACCTCCTTTCTGTCTCATGCGCCCCGGATGGTGTCTGTCTGTC
GGACTTTTATTCCGTCCACGTTCGGGGCCATCCACCTGCTCGACAGAAAC
TTGTGCCAGATGAATCGGAACTGGAGGTCAGCAAGACACCGCGTCCGCTG
CCCAGGAATCGCTCGAGGGTTGTGTCTACGGCCAACGAGGTTGACGAGAC
GAAGGGTTTGCTCACGCAGACGCAACTCGCCGAGCTTCTAAAGAGGTGCT
GTCAGCGTGCGGATATGCTTTATGGAGGCTTTTCGTGAAGACTGCAGTAA
GACATTCTTGGGTGACGCACTTGGTCACGAAGAACAAAACTTACATTTTT
TTTTTGCCGTCTCAGCTTCACTTGACCTACTACACTATATTCTACACACG
TAATATATCATATCTATATCTTATAATTATCTCCGCTGTGGGAAGCTTGG
TTCCTGTGTCCACCCCCCCCCGCTGTCTCCCCATGGTAATCCATCTTCTT
GTGGGTGAAAACCACGAGCAAGGTACAGGGTGTGCGGGGGCAAGGCACAT
TGTCGCGTGTCACCCTTTCCCAAGAAATCCTTGATGCCGATCTCGGCTCT
CGCCTTCCTGCCCGCTTTTTATTTTTCTTCCTTCCTCGATTTAAGACTGG
TTCCGCCGAGCGGGGAGGCGCCTTCTCCGGAGCTGAACAAGAGCGTGGCG
GGAGATTTCCACGTCTCTGAGGACAGCACGGCGTTGTTGGCTCGTTACTA
CCGCGCACCAGACGTCCGGATGTCCGGCGACGTAATGACAGCGCGTTGGA
AATGGCGTTAGCCGACGACGGACCCAGGGTAAAGCTAGAGACCGCCCCAC
TATTAATGGATTAGAGGGTCTCCGTCGATTTTGTCCGCAACAAATAGAGG
GGGAGCGGGGGGAAGGAGTTGTGATGGCGCGTTTTCGGATTTTTTTCTTT
TTCCAAGCATGGAGAAAAAATAGGAGGAGGGGCAGAGTCCCTGGGACTGT
TATACTGTTACTATTGTAGTAGACTACGGTACAAGCTCTACTGTTAATGG
TTATGAATTGTTGAATTGATTTCAATTATTTCATATAAAGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig6528:6145..7737-

>mRNA_H-elongata_contig6528.14116.1 ID=mRNA_H-elongata_contig6528.14116.1|Name=mRNA_H-elongata_contig6528.14116.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig6528:6145..7737- (Himanthalia elongata Himel1 dioecious)
ATGTCAAGACCCGAGGCGCAAGCCGCGGCGAAGACCATGTACGACCAACG
GGTTCCCGAGATGAACCCAGACGTACTGCGACAGGCGTTGGAGCTAGGGC
CCGCGCAGAAGACGGTGGTTTCACGCCAGATGTCAAGACCCGAGGCGCAA
GCCGCGGCGAAGACCATGTACGACCAACGGGTTCCCGAGATGAACCCAGA
CGTACTGCGACAGGCGTTGGAGCTAGGGCCCGCGCAGAAGACGGTGGTTT
CACGCCAGAAACTTGTGCCAGATGAATCGGAACTGGAGGTCAGCAAGACA
CCGCGTCCGCTGCCCAGGAATCGCTCGAGGGTTGTGTCTACGGCCAACGA
GGTTGACGAGACGAAGGGTTTGCTCACGCAGACGCAACTCGCCGAGCTTC
TAAAGAGAAACTTGTGCCAGATGAATCGGAACTGGAGGTCAGCAAGACAC
CGCGTCCGCTGCCCAGGAATCGCTCGAGGGTTGTGTCTACGGCCAACGAG
GTTGACGAGACGAAGGGTTTGCTCACGCAGACGCAACTCGCCGAGCTTCT
AAAGAGACTGGTTCCGCCGAGCGGGGAGGCGCCTTCTCCGGAGCTGAACA
AGAGCGTGGCGGGAGATTTCCACGTCTCTGAGGACAGCACGGCGTTGTTG
GCTCGTTACTACCGCGCACCAGACGTCCGGATGTCCGGCGACGTAATGAC
AGCGCGTTGGAAATGGCGTTAGACTGGTTCCGCCGAGCGGGGAGGCGCCT
TCTCCGGAGCTGAACAAGAGCGTGGCGGGAGATTTCCACGTCTCTGAGGA
CAGCACGGCGTTGTTGGCTCGTTACTACCGCGCACCAGACGTCCGGATGT
CCGGCGACGTAATGACAGCGCGTTGGAAATGGCGTTAG
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